Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:23:28 (20335): wrapper (7.7.26015): starting
18:23:28 (20335): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 18:23:28] Arguments: --nthreads 8
[2025-12-01 18:23:28] Threads: 8
[2025-12-01 18:23:28] Checking for CVMFS
[2025-12-01 18:23:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 18:23:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 18:23:29] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 18:23:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 18:23:30] 2.11.2.0 31738 292700 137584 153527 0 84 23612530 25165825 2504 130560 10 125454671 99.873 81329637 2766 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 18:23:30] CVMFS is ok
[2025-12-01 18:23:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 18:23:30] Checking for apptainer binary...
[2025-12-01 18:23:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 18:23:30] Running /usr/bin/apptainer --version
[2025-12-01 18:23:30] apptainer version 1.3.2-1.el7
[2025-12-01 18:23:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 18:23:51] cg-vwn375.simple-grid.lan
[2025-12-01 18:23:51] apptainer works
[2025-12-01 18:23:51] Set ATHENA_PROC_NUMBER=8
[2025-12-01 18:23:51] Set ATHENA_CORE_NUMBER=8
[2025-12-01 18:23:51] Starting ATLAS job with PandaID=6900370355
[2025-12-01 18:23:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 17:56:20]  *** The last 200 lines of the pilot log: ***
[2025-12-02 17:56:20] 2025-12-02 16:55:01,228 | INFO     | time since job start (84439s) is within the limit (172800.0s)
[2025-12-02 17:56:20] 2025-12-02 16:55:03,235 | INFO     | time since job start (84441s) is within the limit (172800.0s)
[2025-12-02 17:56:20] 2025-12-02 16:55:03,300 | INFO     | monitor loop #5677: job 0:6900370355 is in state 'finished'
[2025-12-02 17:56:20] 2025-12-02 16:55:03,300 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 17:56:20] 2025-12-02 16:55:05,242 | INFO     | time since job start (84443s) is within the limit (172800.0s)
[2025-12-02 17:56:20] 2025-12-02 16:55:05,808 | INFO     | monitor loop #5678: job 0:6900370355 is in state 'finished'
[2025-12-02 17:56:20] 2025-12-02 16:55:05,808 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 17:56:20] 2025-12-02 16:55:07,249 | INFO     | time since job start (84445s) is within the limit (172800.0s)
[2025-12-02 17:56:20] 2025-12-02 16:55:08,314 | INFO     | monitor loop #5679: job 0:6900370355 is in state 'finished'
[2025-12-02 17:56:20] 2025-12-02 16:55:08,314 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 17:56:20] 2025-12-02 16:55:09,256 | INFO     | time since job start (84447s) is within the limit (172800.0s)
[2025-12-02 17:56:20] 2025-12-02 16:55:10,451 | INFO     | PID=24077 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 17:56:20] 2025-12-02 16:55:10,451 | INFO     | .. there are 9 such processes running
[2025-12-02 17:56:20] 2025-12-02 16:55:10,653 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 17:56:20] 2025-12-02 16:55:10,655 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-02 17:56:20] 2025-12-02 16:55:10,658 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6900370355/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 17:56:20] 2025-12-02 16:55:10,658 | INFO     | extracted standard info from prmon json
[2025-12-02 17:56:20] 2025-12-02 16:55:10,658 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 17:56:20] 2025-12-02 16:55:10,659 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 17:56:20] 2025-12-02 16:55:10,688 | INFO     | fitting pss+swap vs Time
[2025-12-02 17:56:20] 2025-12-02 16:55:10,691 | INFO     | sum of square deviations: 807855998611.0005
[2025-12-02 17:56:20] 2025-12-02 16:55:10,760 | INFO     | sum of deviations: 3689990118740.2373
[2025-12-02 17:56:20] 2025-12-02 16:55:10,760 | INFO     | mean x: 1764652464.6235466
[2025-12-02 17:56:20] 2025-12-02 16:55:10,760 | INFO     | mean y: 2839646.054505814
[2025-12-02 17:56:20] 2025-12-02 16:55:10,761 | INFO     | intersect: -8057446059.154376
[2025-12-02 17:56:20] 2025-12-02 16:55:10,762 | INFO     | chi2: 20.716362915300866
[2025-12-02 17:56:20] 2025-12-02 16:55:10,764 | INFO     | sum of square deviations: 799081868404.6621
[2025-12-02 17:56:20] 2025-12-02 16:55:10,823 | INFO     | sum of deviations: 4137186708467.306
[2025-12-02 17:56:20] 2025-12-02 16:55:10,823 | INFO     | mean x: 1764652312.127644
[2025-12-02 17:56:20] 2025-12-02 16:55:10,824 | INFO     | mean y: 2847417.226841721
[2025-12-02 17:56:20] 2025-12-02 16:55:10,824 | INFO     | intersect: -9133508167.184258
[2025-12-02 17:56:20] 2025-12-02 16:55:10,825 | INFO     | chi2: 17.657278034441095
[2025-12-02 17:56:20] 2025-12-02 16:55:10,825 | INFO     | current chi2=17.657278034441095 (change=14.766515210063089 %)
[2025-12-02 17:56:20] 2025-12-02 16:55:10,826 | INFO     | right removable region: 1370
[2025-12-02 17:56:20] 2025-12-02 16:55:10,827 | INFO     | sum of square deviations: 799080925344.663
[2025-12-02 17:56:20] 2025-12-02 16:55:10,877 | INFO     | sum of deviations: 3109672211012.0864
[2025-12-02 17:56:20] 2025-12-02 16:55:10,877 | INFO     | mean x: 1764652617.127644
[2025-12-02 17:56:20] 2025-12-02 16:55:10,877 | INFO     | mean y: 2849730.976659373
[2025-12-02 17:56:20] 2025-12-02 16:55:10,877 | INFO     | intersect: -6864403674.183396
[2025-12-02 17:56:20] 2025-12-02 16:55:10,879 | INFO     | chi2: 15.894544726569741
[2025-12-02 17:56:20] 2025-12-02 16:55:10,879 | INFO     | current chi2=15.894544726569741 (change=23.27540895303483 %)
[2025-12-02 17:56:20] 2025-12-02 16:55:10,879 | INFO     | left removable region: 10
[2025-12-02 17:56:20] 2025-12-02 16:55:10,881 | INFO     | sum of square deviations: 780001033986.562
[2025-12-02 17:56:20] 2025-12-02 16:55:10,893 | INFO     | monitor loop #5680: job 0:6900370355 is in state 'finished'
[2025-12-02 17:56:20] 2025-12-02 16:55:10,929 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 17:56:20] 2025-12-02 16:55:10,942 | INFO     | sum of deviations: 3156614874445.2734
[2025-12-02 17:56:20] 2025-12-02 16:55:10,942 | INFO     | mean x: 1764652586.6367648
[2025-12-02 17:56:20] 2025-12-02 16:55:10,942 | INFO     | mean y: 2868110.8345588236
[2025-12-02 17:56:20] 2025-12-02 16:55:10,942 | INFO     | intersect: -7138569349.493096
[2025-12-02 17:56:20] 2025-12-02 16:55:10,944 | INFO     | chi2: 8.600423449013569
[2025-12-02 17:56:20] 2025-12-02 16:55:10,944 | INFO     | current memory leak: 4.05 B/s (using 1360 data points, chi2=8.60)
[2025-12-02 17:56:20] 2025-12-02 16:55:10,946 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-02 17:56:20] 2025-12-02 16:55:10,946 | INFO     | ..............................
[2025-12-02 17:56:20] 2025-12-02 16:55:10,946 | INFO     | . Timing measurements:
[2025-12-02 17:56:20] 2025-12-02 16:55:10,946 | INFO     | . get job = 0 s
[2025-12-02 17:56:20] 2025-12-02 16:55:10,946 | INFO     | . initial setup = 12 s
[2025-12-02 17:56:20] 2025-12-02 16:55:10,946 | INFO     | . payload setup = 138 s
[2025-12-02 17:56:20] 2025-12-02 16:55:10,946 | INFO     | . stage-in = 0 s
[2025-12-02 17:56:20] 2025-12-02 16:55:10,946 | INFO     | . payload execution = 84030 s
[2025-12-02 17:56:20] 2025-12-02 16:55:10,946 | INFO     | . stage-out = 6 s
[2025-12-02 17:56:20] 2025-12-02 16:55:10,946 | INFO     | . log creation = 2 s
[2025-12-02 17:56:20] 2025-12-02 16:55:10,947 | INFO     | ..............................
[2025-12-02 17:56:20] 2025-12-02 16:55:11,452 | INFO     | time since job start (84449s) is within the limit (172800.0s)
[2025-12-02 17:56:20] 2025-12-02 16:55:11,462 | INFO     | 
[2025-12-02 17:56:20] 2025-12-02 16:55:11,462 | INFO     | job summary report
[2025-12-02 17:56:20] 2025-12-02 16:55:11,462 | INFO     | --------------------------------------------------
[2025-12-02 17:56:20] 2025-12-02 16:55:11,462 | INFO     | PanDA job id: 6900370355
[2025-12-02 17:56:20] 2025-12-02 16:55:11,462 | INFO     | task id: 47556173
[2025-12-02 17:56:20] 2025-12-02 16:55:11,462 | INFO     | errors: (none)
[2025-12-02 17:56:20] 2025-12-02 16:55:11,462 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 17:56:20] 2025-12-02 16:55:11,462 | INFO     | pilot state: finished 
[2025-12-02 17:56:20] 2025-12-02 16:55:11,462 | INFO     | transexitcode: 0
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | exeerrorcode: 0
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | exeerrordiag: 
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | exitcode: 0
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | exitmsg: OK
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | cpuconsumptiontime: 318587 s
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | nevents: 1000
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | neventsw: 0
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | pid: 30676
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | pgrp: 30676
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | corecount: 8
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | event service: False
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | sizes: {0: 2283489, 1: 2284174, 2: 2284373, 13: 2284373, 24: 2284429, 35: 2284457, 45: 2284613, 56: 2284641, 67: 2284669, 78: 2284697, 86: 2285015, 88: 2285323, 84
[2025-12-02 17:56:20] 2025-12-02 16:55:11,463 | INFO     | --------------------------------------------------
[2025-12-02 17:56:20] 2025-12-02 16:55:11,464 | INFO     | 
[2025-12-02 17:56:20] 2025-12-02 16:55:11,464 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-02 17:56:20] 2025-12-02 16:55:11,816 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,817 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,817 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,817 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,817 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,817 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,817 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,818 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,818 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,818 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,818 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,818 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,819 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,819 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,819 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 17:56:20] 2025-12-02 16:55:11,820 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,820 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 17:56:20] 2025-12-02 16:55:11,820 | INFO     | job 6900370355 has completed (purged errors)
[2025-12-02 17:56:20] 2025-12-02 16:55:11,820 | INFO     | overall cleanup function is called
[2025-12-02 17:56:20] 2025-12-02 16:55:12,842 | INFO     | --- collectZombieJob: --- 10, [30676]
[2025-12-02 17:56:20] 2025-12-02 16:55:12,842 | INFO     | zombie collector waiting for pid 30676
[2025-12-02 17:56:20] 2025-12-02 16:55:12,842 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 17:56:20] 2025-12-02 16:55:12,842 | INFO     | collected zombie processes
[2025-12-02 17:56:20] 2025-12-02 16:55:12,843 | INFO     | will attempt to kill all subprocesses of pid=30676
[2025-12-02 17:56:20] 2025-12-02 16:55:12,990 | INFO     | process IDs to be killed: [30676] (in reverse order)
[2025-12-02 17:56:20] 2025-12-02 16:55:13,162 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 17:56:20] 2025-12-02 16:55:13,163 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 17:56:20] 2025-12-02 16:55:13,166 | INFO     | did not find any defunct processes belonging to 30676
[2025-12-02 17:56:20] 2025-12-02 16:55:13,168 | INFO     | did not find any defunct processes belonging to 30676
[2025-12-02 17:56:20] 2025-12-02 16:55:13,201 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 17:56:20] 2025-12-02 16:55:13,201 | INFO     | ready for new job
[2025-12-02 17:56:20] 2025-12-02 16:55:13,201 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 17:56:20] 2025-12-02 16:55:13,206 | INFO     | ***************************************
[2025-12-02 17:56:20] 2025-12-02 16:55:13,207 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 17:56:20] 2025-12-02 16:55:13,207 | INFO     | ***************************************
[2025-12-02 17:56:20] 2025-12-02 16:55:13,207 | INFO     | 
[2025-12-02 17:56:20] 2025-12-02 16:55:13,207 | INFO     | pilot is running in a VM
[2025-12-02 17:56:20] 2025-12-02 16:55:13,207 | INFO     | architecture information:
[2025-12-02 17:56:20] 2025-12-02 16:55:13,210 | INFO     | executing command: cat /etc/os-release
[2025-12-02 17:56:20] 2025-12-02 16:55:13,305 | INFO     | cat /etc/os-release:
[2025-12-02 17:56:20] NAME="CentOS Linux"
[2025-12-02 17:56:20] VERSION="7 (Core)"
[2025-12-02 17:56:20] ID="centos"
[2025-12-02 17:56:20] ID_LIKE="rhel fedora"
[2025-12-02 17:56:20] VERSION_ID="7"
[2025-12-02 17:56:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 17:56:20] ANSI_COLOR="0;31"
[2025-12-02 17:56:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 17:56:20] HOME_URL="https://www.centos.org/"
[2025-12-02 17:56:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 17:56:20] 
[2025-12-02 17:56:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 17:56:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 17:56:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 17:56:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 17:56:20] 
[2025-12-02 17:56:20] 2025-12-02 16:55:13,306 | INFO     | ***************************************
[2025-12-02 17:56:20] 2025-12-02 16:55:13,809 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-02 17:56:20] 2025-12-02 16:55:14,104 | INFO     | sufficient remaining disk space (489949233152 B)
[2025-12-02 17:56:20] 2025-12-02 16:55:14,104 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 17:56:20] 2025-12-02 16:55:14,105 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 17:56:20] 2025-12-02 16:55:14,105 | INFO     | update_server=False
[2025-12-02 17:56:20] 2025-12-02 16:55:14,105 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 17:56:20] 2025-12-02 16:55:14,148 | INFO     | all payload control threads have been joined
[2025-12-02 17:56:20] 2025-12-02 16:55:14,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 17:56:20] 2025-12-02 16:55:14,451 | INFO     | aborting loop
[2025-12-02 17:56:20] 2025-12-02 16:55:14,546 | INFO     | all job control threads have been joined
[2025-12-02 17:56:20] 2025-12-02 16:55:14,767 | INFO     | all data control threads have been joined
[2025-12-02 17:56:20] 2025-12-02 16:55:15,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 17:56:20] 2025-12-02 16:55:15,111 | INFO     | [job] retrieve thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:15,154 | INFO     | [payload] control thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:15,395 | INFO     | [payload] validate_post thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:15,457 | INFO     | [job] job monitor thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:15,552 | INFO     | [job] control thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:15,773 | INFO     | [data] control thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:15,910 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 17:56:20] 2025-12-02 16:55:16,009 | INFO     | [job] validate thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:16,076 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:16,076 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 17:56:20] 2025-12-02 16:55:16,244 | INFO     | [data] copytool_in thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:16,359 | INFO     | [payload] failed_post thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:16,378 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:16,384 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:16,525 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:17,077 | INFO     | [data] copytool_out thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:17,082 | INFO     | [job] queue monitor thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:19,919 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 17:56:20] 2025-12-02 16:55:44,614 | INFO     | PID=24077 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 17:56:20] 2025-12-02 16:55:44,614 | INFO     | .. there are 9 such processes running
[2025-12-02 17:56:20] 2025-12-02 16:55:44,614 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 17:56:20] 2025-12-02 16:55:44,614 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 17:56:20] 2025-12-02 16:55:44,614 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 17:56:20] 2025-12-02 16:56:08,683 | INFO     | [monitor] cgroup control has ended
[2025-12-02 17:56:20] 2025-12-02 16:56:10,132 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140069183248192)>', '<ExcThread(monitor, started 140068605912832)>']
[2025-12-02 17:56:20] 2025-12-02 16:56:10,770 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 17:56:20] 2025-12-02 16:56:10,770 | INFO     | [monitor] control thread has ended
[2025-12-02 17:56:20] 2025-12-02 16:56:15,158 | INFO     | all workflow threads have been joined
[2025-12-02 17:56:20] 2025-12-02 16:56:15,158 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 17:56:20] 2025-12-02 16:56:15,158 | INFO     | traces error code: 0
[2025-12-02 17:56:20] 2025-12-02 16:56:15,158 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 17:56:20] 2025-12-02 16:56:15,405 [wrapper] ==== pilot stdout END ====
[2025-12-02 17:56:20] 2025-12-02 16:56:15,477 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 17:56:20] 2025-12-02 16:56:15,553 [wrapper] pilotpid: 24077
[2025-12-02 17:56:20] 2025-12-02 16:56:15,645 [wrapper] Pilot exit status: 0
[2025-12-02 17:56:20] 2025-12-02 16:56:16,056 [wrapper] pandaids: 6900370355
[2025-12-02 17:56:20] 2025-12-02 16:56:17,204 [wrapper] cleanup supervisor_pilot 32610 24078
[2025-12-02 17:56:20] 2025-12-02 16:56:17,318 [wrapper] Test setup, not cleaning
[2025-12-02 17:56:20] 2025-12-02 16:56:17,432 [wrapper] apfmon messages muted
[2025-12-02 17:56:20] 2025-12-02 16:56:17,545 [wrapper] ==== wrapper stdout END ====
[2025-12-02 17:56:20] 2025-12-02 16:56:17,602 [wrapper] ==== wrapper stderr END ====
[2025-12-02 17:56:20]  *** Error codes and diagnostics ***
[2025-12-02 17:56:20]     "exeErrorCode": 0,
[2025-12-02 17:56:20]     "exeErrorDiag": "",
[2025-12-02 17:56:20]     "pilotErrorCode": 0,
[2025-12-02 17:56:20]     "pilotErrorDiag": "",
[2025-12-02 17:56:20]  *** Listing of results directory ***
[2025-12-02 17:56:20] total 1326624
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc    576529 Nov 28 01:58 pilot3.tar.gz
[2025-12-02 17:56:20] -rwx------. 1 boinc boinc     36292 Nov 28 01:59 runpilot2-wrapper.sh
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc      5112 Nov 28 01:59 queuedata.json
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc       100 Dec  1 18:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 17:56:20] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 18:23 run_atlas
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc       105 Dec  1 18:23 job.xml
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc      6392 Dec  1 18:23 init_data.xml
[2025-12-02 17:56:20] -rw-r--r--. 2 boinc boinc 409741192 Dec  1 18:23 EVNT.47483658._003467.pool.root.1
[2025-12-02 17:56:20] -rw-r--r--. 2 boinc boinc     15847 Dec  1 18:23 start_atlas.sh
[2025-12-02 17:56:20] drwxrwx--x. 2 boinc boinc        68 Dec  1 18:23 shared
[2025-12-02 17:56:20] -rw-r--r--. 2 boinc boinc    590104 Dec  1 18:23 input.tar.gz
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc         0 Dec  1 18:23 boinc_lockfile
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc      2788 Dec  1 18:23 pandaJob.out
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc    991946 Dec  1 18:27 agis_schedconf.cvmfs.json
[2025-12-02 17:56:20] drwx------. 5 boinc boinc      4096 Dec  1 18:27 pilot3
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc       533 Dec  2 17:33 boinc_task_state.xml
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc 917384378 Dec  2 17:52 HITS.47556173._004233.pool.root.1
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc      1031 Dec  2 17:53 memory_monitor_summary.json
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc   1516240 Dec  2 17:53 agis_ddmendpoints.agis.ALL.json
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc   2461708 Dec  2 17:53 log.47556173._004233.job.log.tgz.1
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc        95 Dec  2 17:54 pilot_heartbeat.json
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc      8626 Dec  2 17:55 heartbeat.json
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc      8192 Dec  2 17:56 boinc_mmap_file
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc        29 Dec  2 17:56 wrapper_checkpoint.txt
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc      4884 Dec  2 17:56 pilotlog.txt
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc  11254340 Dec  2 17:56 log.47556173._004233.job.log.1
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc       353 Dec  2 17:56 output.list
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc       620 Dec  2 17:56 runtime_log
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc  13731840 Dec  2 17:56 result.tar.gz
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc      8817 Dec  2 17:56 runtime_log.err
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc       662 Dec  2 17:56 atmNDmQ01i8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmY8NKDmpXyKWo.diag
[2025-12-02 17:56:20] -rw-r--r--. 1 boinc boinc     21502 Dec  2 17:56 stderr.txt
[2025-12-02 17:56:20] HITS file was successfully produced:
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc 917384378 Dec  2 17:52 shared/HITS.pool.root.1
[2025-12-02 17:56:20]  *** Contents of shared directory: ***
[2025-12-02 17:56:20] total 1310032
[2025-12-02 17:56:20] -rw-r--r--. 2 boinc boinc 409741192 Dec  1 18:23 ATLAS.root_0
[2025-12-02 17:56:20] -rw-r--r--. 2 boinc boinc     15847 Dec  1 18:23 start_atlas.sh
[2025-12-02 17:56:20] -rw-r--r--. 2 boinc boinc    590104 Dec  1 18:23 input.tar.gz
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc 917384378 Dec  2 17:52 HITS.pool.root.1
[2025-12-02 17:56:20] -rw-------. 1 boinc boinc  13731840 Dec  2 17:56 result.tar.gz
17:56:21 (20335): run_atlas exited; CPU time 319212.098230
17:56:21 (20335): called boinc_finish(0)

</stderr_txt>
]]>

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