Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:36:43 (365404): wrapper (7.7.26015): starting
18:36:43 (365404): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 18:36:43] Arguments: --nthreads 8
[2025-11-29 18:36:43] Threads: 8
[2025-11-29 18:36:43] Checking for CVMFS
[2025-11-29 18:36:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 18:36:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 18:36:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 18:36:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 18:36:45] 2.13.3.0 10223 35016 284540 153461 1 943 32678820 40960000 52864 16776704 0 449237161 99.753 291726432 50045 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 18:36:45] CVMFS is ok
[2025-11-29 18:36:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 18:36:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 18:36:45] Further information can be found at the LHC@home message board.
[2025-11-29 18:36:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 18:36:45] Checking for apptainer binary...
[2025-11-29 18:36:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 18:36:45] Running /usr/bin/apptainer --version
[2025-11-29 18:36:45] apptainer version 1.4.4-1.el9
[2025-11-29 18:36:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 18:36:46] c8-7-6.aglt2.org
[2025-11-29 18:36:46] apptainer works
[2025-11-29 18:36:47] Set ATHENA_PROC_NUMBER=8
[2025-11-29 18:36:47] Set ATHENA_CORE_NUMBER=8
[2025-11-29 18:36:47] Starting ATLAS job with PandaID=6893846197
[2025-11-29 18:36:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 09:34:08]  *** The last 200 lines of the pilot log: ***
[2025-11-30 09:34:08] 2025-11-30 14:33:20,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 09:34:08] 2025-11-30 14:33:22,755 | INFO     | time since job start (53701s) is within the limit (172800.0s)
[2025-11-30 09:34:08] 2025-11-30 14:33:23,420 | INFO     | monitor loop #2861: job 0:6893846197 is in state 'finished'
[2025-11-30 09:34:08] 2025-11-30 14:33:23,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 09:34:08] 2025-11-30 14:33:24,774 | INFO     | time since job start (53703s) is within the limit (172800.0s)
[2025-11-30 09:34:08] 2025-11-30 14:33:25,928 | INFO     | monitor loop #2862: job 0:6893846197 is in state 'finished'
[2025-11-30 09:34:08] 2025-11-30 14:33:25,928 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 09:34:08] 2025-11-30 14:33:27,812 | INFO     | PID=382436 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-30 09:34:08] 2025-11-30 14:33:27,812 | INFO     | .. there are 71 such processes running
[2025-11-30 09:34:08] 2025-11-30 14:33:28,443 | INFO     | monitor loop #2863: job 0:6893846197 is in state 'finished'
[2025-11-30 09:34:08] 2025-11-30 14:33:28,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 09:34:08] 2025-11-30 14:33:28,813 | INFO     | time since job start (53707s) is within the limit (172800.0s)
[2025-11-30 09:34:08] 2025-11-30 14:33:30,820 | INFO     | time since job start (53709s) is within the limit (172800.0s)
[2025-11-30 09:34:08] 2025-11-30 14:33:30,950 | INFO     | monitor loop #2864: job 0:6893846197 is in state 'finished'
[2025-11-30 09:34:08] 2025-11-30 14:33:30,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 09:34:08] 2025-11-30 14:33:31,705 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-30 09:34:08] 2025-11-30 14:33:31,713 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3790.1619999999994
[2025-11-30 09:34:08] 2025-11-30 14:33:31,866 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893846197/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 09:34:08] 2025-11-30 14:33:31,866 | INFO     | extracted standard info from prmon json
[2025-11-30 09:34:08] 2025-11-30 14:33:31,866 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 09:34:08] 2025-11-30 14:33:31,866 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 09:34:08] 2025-11-30 14:33:31,947 | INFO     | fitting pss+swap vs Time
[2025-11-30 09:34:08] 2025-11-30 14:33:31,947 | INFO     | sum of square deviations: 209163713394.3826
[2025-11-30 09:34:08] 2025-11-30 14:33:31,964 | INFO     | sum of deviations: 294568169158.8219
[2025-11-30 09:34:08] 2025-11-30 14:33:31,964 | INFO     | mean x: 1764486411.3249714
[2025-11-30 09:34:08] 2025-11-30 14:33:31,965 | INFO     | mean y: 2812821.8848346635
[2025-11-30 09:34:08] 2025-11-30 14:33:31,965 | INFO     | intersect: -2482137953.0595527
[2025-11-30 09:34:08] 2025-11-30 14:33:31,965 | INFO     | chi2: 33.25518393491485
[2025-11-30 09:34:08] 2025-11-30 14:33:31,966 | INFO     | sum of square deviations: 205607015055.555
[2025-11-30 09:34:08] 2025-11-30 14:33:31,986 | INFO     | sum of deviations: 569355153728.3868
[2025-11-30 09:34:08] 2025-11-30 14:33:31,987 | INFO     | mean x: 1764486258.832569
[2025-11-30 09:34:08] 2025-11-30 14:33:31,987 | INFO     | mean y: 2824600.0779816513
[2025-11-30 09:34:08] 2025-11-30 14:33:31,987 | INFO     | intersect: -4883289547.718947
[2025-11-30 09:34:08] 2025-11-30 14:33:31,987 | INFO     | chi2: 30.020757362981403
[2025-11-30 09:34:08] 2025-11-30 14:33:31,987 | INFO     | current chi2=30.020757362981403 (change=9.726082340316262 %)
[2025-11-30 09:34:08] 2025-11-30 14:33:31,987 | INFO     | right removable region: 871
[2025-11-30 09:34:08] 2025-11-30 14:33:31,990 | INFO     | sum of square deviations: 205606306235.55493
[2025-11-30 09:34:08] 2025-11-30 14:33:32,009 | INFO     | sum of deviations: -57759365151.3163
[2025-11-30 09:34:08] 2025-11-30 14:33:32,010 | INFO     | mean x: 1764486563.832569
[2025-11-30 09:34:08] 2025-11-30 14:33:32,010 | INFO     | mean y: 2827923.7786697247
[2025-11-30 09:34:08] 2025-11-30 14:33:32,010 | INFO     | intersect: 498511279.0753505
[2025-11-30 09:34:08] 2025-11-30 14:33:32,010 | INFO     | chi2: 28.892509686068426
[2025-11-30 09:34:08] 2025-11-30 14:33:32,010 | INFO     | current chi2=28.892509686068426 (change=13.1187794882891 %)
[2025-11-30 09:34:08] 2025-11-30 14:33:32,010 | INFO     | left removable region: 10
[2025-11-30 09:34:08] 2025-11-30 14:33:32,011 | INFO     | sum of square deviations: 197923300949.77234
[2025-11-30 09:34:08] 2025-11-30 14:33:32,027 | INFO     | sum of deviations: -19637265226.627594
[2025-11-30 09:34:08] 2025-11-30 14:33:32,028 | INFO     | mean x: 1764486533.3495934
[2025-11-30 09:34:08] 2025-11-30 14:33:32,028 | INFO     | mean y: 2855107.925667828
[2025-11-30 09:34:08] 2025-11-30 14:33:32,032 | INFO     | intersect: 177921357.72003543
[2025-11-30 09:34:08] 2025-11-30 14:33:32,032 | INFO     | chi2: 22.039877029134693
[2025-11-30 09:34:08] 2025-11-30 14:33:32,032 | INFO     | current memory leak: -0.10 B/s (using 861 data points, chi2=22.04)
[2025-11-30 09:34:08] 2025-11-30 14:33:32,033 | INFO     | could have reported an average CPU frequency of 3785 MHz (33 samples)
[2025-11-30 09:34:08] 2025-11-30 14:33:32,033 | INFO     | ..............................
[2025-11-30 09:34:08] 2025-11-30 14:33:32,033 | INFO     | . Timing measurements:
[2025-11-30 09:34:08] 2025-11-30 14:33:32,033 | INFO     | . get job = 0 s
[2025-11-30 09:34:08] 2025-11-30 14:33:32,033 | INFO     | . initial setup = 7 s
[2025-11-30 09:34:08] 2025-11-30 14:33:32,033 | INFO     | . payload setup = 65 s
[2025-11-30 09:34:08] 2025-11-30 14:33:32,033 | INFO     | . stage-in = 0 s
[2025-11-30 09:34:08] 2025-11-30 14:33:32,033 | INFO     | . payload execution = 53509 s
[2025-11-30 09:34:08] 2025-11-30 14:33:32,033 | INFO     | . stage-out = 7 s
[2025-11-30 09:34:08] 2025-11-30 14:33:32,034 | INFO     | . log creation = 1 s
[2025-11-30 09:34:08] 2025-11-30 14:33:32,034 | INFO     | ..............................
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | 
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | job summary report
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | --------------------------------------------------
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | PanDA job id: 6893846197
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | task id: 47523449
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | errors: (none)
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | pilot state: finished 
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | transexitcode: 0
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | exeerrorcode: 0
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | exeerrordiag: 
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | exitcode: 0
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | exitmsg: OK
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | cpuconsumptiontime: 135282 s
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | nevents: 1000
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | neventsw: 0
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | pid: 409004
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | pgrp: 409004
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | corecount: 8
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | event service: False
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | sizes: {0: 2283487, 1: 2284343, 12: 2284343, 23: 2284371, 34: 2284399, 39: 2284689, 45: 2284845, 53580: 2333605, 53589: 2342599, 53592: 2342655, 53625: 2342965}
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | --------------------------------------------------
[2025-11-30 09:34:08] 2025-11-30 14:33:32,137 | INFO     | 
[2025-11-30 09:34:08] 2025-11-30 14:33:32,138 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-30 09:34:08] 2025-11-30 14:33:32,252 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,252 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | job 6893846197 has completed (purged errors)
[2025-11-30 09:34:08] 2025-11-30 14:33:32,253 | INFO     | overall cleanup function is called
[2025-11-30 09:34:08] 2025-11-30 14:33:33,287 | INFO     | --- collectZombieJob: --- 10, [409004]
[2025-11-30 09:34:08] 2025-11-30 14:33:33,287 | INFO     | zombie collector waiting for pid 409004
[2025-11-30 09:34:08] 2025-11-30 14:33:33,287 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 09:34:08] 2025-11-30 14:33:33,287 | INFO     | collected zombie processes
[2025-11-30 09:34:08] 2025-11-30 14:33:33,287 | INFO     | will attempt to kill all subprocesses of pid=409004
[2025-11-30 09:34:08] 2025-11-30 14:33:34,560 | INFO     | process IDs to be killed: [409004] (in reverse order)
[2025-11-30 09:34:08] 2025-11-30 14:33:35,024 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 09:34:08] 2025-11-30 14:33:35,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 09:34:08] 2025-11-30 14:33:35,068 | INFO     | did not find any defunct processes belonging to 409004
[2025-11-30 09:34:08] 2025-11-30 14:33:35,098 | INFO     | did not find any defunct processes belonging to 409004
[2025-11-30 09:34:08] 2025-11-30 14:33:35,103 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 09:34:08] 2025-11-30 14:33:35,103 | INFO     | ready for new job
[2025-11-30 09:34:08] 2025-11-30 14:33:35,104 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 09:34:08] 2025-11-30 14:33:35,106 | INFO     | ***************************************
[2025-11-30 09:34:08] 2025-11-30 14:33:35,106 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 09:34:08] 2025-11-30 14:33:35,106 | INFO     | ***************************************
[2025-11-30 09:34:08] 2025-11-30 14:33:35,106 | INFO     | 
[2025-11-30 09:34:08] 2025-11-30 14:33:35,111 | INFO     | architecture information:
[2025-11-30 09:34:08] 2025-11-30 14:33:35,119 | INFO     | executing command: cat /etc/os-release
[2025-11-30 09:34:08] 2025-11-30 14:33:35,181 | INFO     | cat /etc/os-release:
[2025-11-30 09:34:08] NAME="CentOS Linux"
[2025-11-30 09:34:08] VERSION="7 (Core)"
[2025-11-30 09:34:08] ID="centos"
[2025-11-30 09:34:08] ID_LIKE="rhel fedora"
[2025-11-30 09:34:08] VERSION_ID="7"
[2025-11-30 09:34:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 09:34:08] ANSI_COLOR="0;31"
[2025-11-30 09:34:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 09:34:08] HOME_URL="https://www.centos.org/"
[2025-11-30 09:34:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 09:34:08] 
[2025-11-30 09:34:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 09:34:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 09:34:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 09:34:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 09:34:08] 
[2025-11-30 09:34:08] 2025-11-30 14:33:35,181 | INFO     | ***************************************
[2025-11-30 09:34:08] 2025-11-30 14:33:35,685 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-30 09:34:08] 2025-11-30 14:33:35,773 | INFO     | sufficient remaining disk space (164321296384 B)
[2025-11-30 09:34:08] 2025-11-30 14:33:35,773 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 09:34:08] 2025-11-30 14:33:35,773 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 09:34:08] 2025-11-30 14:33:35,773 | INFO     | update_server=False
[2025-11-30 09:34:08] 2025-11-30 14:33:35,773 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 09:34:08] 2025-11-30 14:33:35,993 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-30 09:34:08] 2025-11-30 14:33:35,993 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-30 09:34:08] 2025-11-30 14:33:35,993 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 09:34:08] 2025-11-30 14:33:35,993 | INFO     | will abort loop
[2025-11-30 09:34:08] 2025-11-30 14:33:36,079 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 09:34:08] 2025-11-30 14:33:36,328 | INFO     | all data control threads have been joined
[2025-11-30 09:34:08] 2025-11-30 14:33:36,434 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 09:34:08] 2025-11-30 14:33:36,438 | INFO     | all payload control threads have been joined
[2025-11-30 09:34:08] 2025-11-30 14:33:36,779 | INFO     | [job] retrieve thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:36,999 | INFO     | [job] job monitor thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:37,078 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:37,164 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 09:34:08] 2025-11-30 14:33:37,170 | INFO     | [payload] failed_post thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:37,232 | INFO     | all job control threads have been joined
[2025-11-30 09:34:08] 2025-11-30 14:33:37,334 | INFO     | [data] control thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:37,368 | INFO     | [data] copytool_in thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:37,448 | INFO     | [payload] control thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:37,479 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:37,998 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:38,169 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:38,169 | INFO     | [job] validate thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:38,170 | INFO     | [job] queue monitor thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:38,238 | INFO     | [job] control thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:38,325 | INFO     | [payload] validate_post thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:38,456 | INFO     | [data] copytool_out thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:40,088 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 09:34:08] 2025-11-30 14:33:58,099 | INFO     | [monitor] cgroup control has ended
[2025-11-30 09:34:08] 2025-11-30 14:33:58,353 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140172123481920)>', '<ExcThread(monitor, started 140171349583616)>']
[2025-11-30 09:34:08] 2025-11-30 14:34:03,378 | INFO     | all workflow threads have been joined
[2025-11-30 09:34:08] 2025-11-30 14:34:03,378 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 09:34:08] 2025-11-30 14:34:03,379 | INFO     | traces error code: 0
[2025-11-30 09:34:08] 2025-11-30 14:34:03,379 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 09:34:08] 2025-11-30 14:34:05,955 | INFO     | PID=382436 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-30 09:34:08] 2025-11-30 14:34:05,955 | INFO     | .. there are 71 such processes running
[2025-11-30 09:34:08] 2025-11-30 14:34:05,955 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 09:34:08] 2025-11-30 14:34:05,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 09:34:08] 2025-11-30 14:34:05,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 09:34:08] 2025-11-30 14:34:05,956 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 09:34:08] 2025-11-30 14:34:05,956 | INFO     | [monitor] control thread has ended
[2025-11-30 09:34:08] 2025-11-30 14:34:06,233 [wrapper] ==== pilot stdout END ====
[2025-11-30 09:34:08] 2025-11-30 14:34:06,264 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 09:34:08] 2025-11-30 14:34:06,279 [wrapper] pilotpid: 382436
[2025-11-30 09:34:08] 2025-11-30 14:34:06,335 [wrapper] Pilot exit status: 0
[2025-11-30 09:34:08] 2025-11-30 14:34:06,453 [wrapper] pandaids: 6893846197
[2025-11-30 09:34:08] 2025-11-30 14:34:07,158 [wrapper] cleanup supervisor_pilot 2121977 382437
[2025-11-30 09:34:08] 2025-11-30 14:34:07,200 [wrapper] Test setup, not cleaning
[2025-11-30 09:34:08] 2025-11-30 14:34:07,242 [wrapper] apfmon messages muted
[2025-11-30 09:34:08] 2025-11-30 14:34:07,312 [wrapper] ==== wrapper stdout END ====
[2025-11-30 09:34:08] 2025-11-30 14:34:07,398 [wrapper] ==== wrapper stderr END ====
[2025-11-30 09:34:08]  *** Error codes and diagnostics ***
[2025-11-30 09:34:08]     "exeErrorCode": 0,
[2025-11-30 09:34:08]     "exeErrorDiag": "",
[2025-11-30 09:34:08]     "pilotErrorCode": 0,
[2025-11-30 09:34:08]     "pilotErrorDiag": "",
[2025-11-30 09:34:08]  *** Listing of results directory ***
[2025-11-30 09:34:08] total 1309016
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-30 09:34:08] -rwx------. 1 boincer umatlas     36292 Nov 20 05:19 runpilot2-wrapper.sh
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:21 queuedata.json
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas       100 Nov 29 18:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 09:34:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 18:36 run_atlas
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas       105 Nov 29 18:36 job.xml
[2025-11-30 09:34:08] -rw-r--r--. 2 boincer umatlas 407831731 Nov 29 18:36 EVNT.47493127._000216.pool.root.1
[2025-11-30 09:34:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 18:36 start_atlas.sh
[2025-11-30 09:34:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 18:36 shared
[2025-11-30 09:34:08] -rw-r--r--. 2 boincer umatlas    590103 Nov 29 18:36 input.tar.gz
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas         0 Nov 29 18:36 boinc_lockfile
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas      2786 Nov 29 18:36 pandaJob.out
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas        57 Nov 29 18:36 setup.sh.local
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas    991826 Nov 29 18:38 agis_schedconf.cvmfs.json
[2025-11-30 09:34:08] drwx------. 5 boincer umatlas      4096 Nov 29 18:38 pilot3
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas       533 Nov 30 08:54 boinc_task_state.xml
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas      7173 Nov 30 09:29 init_data.xml
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas 912144648 Nov 30 09:31 HITS.47523449._002157.pool.root.1
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas      1072 Nov 30 09:32 memory_monitor_summary.json
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas   1516240 Nov 30 09:32 agis_ddmendpoints.agis.ALL.json
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas   1991834 Nov 30 09:32 log.47523449._002157.job.log.tgz.1
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas        95 Nov 30 09:33 pilot_heartbeat.json
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas      8639 Nov 30 09:33 heartbeat.json
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 30 09:34 boinc_mmap_file
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas        29 Nov 30 09:34 wrapper_checkpoint.txt
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas       822 Nov 30 09:34 pilotlog.txt
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas   6277283 Nov 30 09:34 log.47523449._002157.job.log.1
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas       353 Nov 30 09:34 output.list
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas       620 Nov 30 09:34 runtime_log
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas   8284160 Nov 30 09:34 result.tar.gz
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas      9333 Nov 30 09:34 runtime_log.err
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas       664 Nov 30 09:34 p7bMDmgwGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmROGKDmay1lum.diag
[2025-11-30 09:34:08] -rw-r--r--. 1 boincer umatlas     21870 Nov 30 09:34 stderr.txt
[2025-11-30 09:34:08] HITS file was successfully produced:
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas 912144648 Nov 30 09:31 shared/HITS.pool.root.1
[2025-11-30 09:34:08]  *** Contents of shared directory: ***
[2025-11-30 09:34:08] total 1297740
[2025-11-30 09:34:08] -rw-r--r--. 2 boincer umatlas 407831731 Nov 29 18:36 ATLAS.root_0
[2025-11-30 09:34:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 18:36 start_atlas.sh
[2025-11-30 09:34:08] -rw-r--r--. 2 boincer umatlas    590103 Nov 29 18:36 input.tar.gz
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas 912144648 Nov 30 09:31 HITS.pool.root.1
[2025-11-30 09:34:08] -rw-------. 1 boincer umatlas   8284160 Nov 30 09:34 result.tar.gz
09:34:09 (365404): run_atlas exited; CPU time 136526.647623
09:34:09 (365404): called boinc_finish(0)

</stderr_txt>
]]>

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