Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:22:09 (565447): wrapper (7.7.26015): starting
21:22:09 (565447): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 21:22:09] Arguments: --nthreads 8
[2025-11-29 21:22:09] Threads: 8
[2025-11-29 21:22:09] Checking for CVMFS
[2025-11-29 21:22:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 21:22:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 21:22:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 21:22:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 21:22:11] 2.13.3.0 11888 35157 369224 153464 2 81 18997205 32935936 31629 16776704 0 184118807 99.525 224853112 35202 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 21:22:11] CVMFS is ok
[2025-11-29 21:22:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 21:22:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 21:22:11] Further information can be found at the LHC@home message board.
[2025-11-29 21:22:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 21:22:11] Checking for apptainer binary...
[2025-11-29 21:22:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 21:22:11] Running /usr/bin/apptainer --version
[2025-11-29 21:22:11] apptainer version 1.4.4-1.el9
[2025-11-29 21:22:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 21:22:11] c6-2-11-3.aglt2.org
[2025-11-29 21:22:11] apptainer works
[2025-11-29 21:22:11] Set ATHENA_PROC_NUMBER=8
[2025-11-29 21:22:11] Set ATHENA_CORE_NUMBER=8
[2025-11-29 21:22:11] Starting ATLAS job with PandaID=6893835417
[2025-11-29 21:22:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 03:36:26]  *** The last 200 lines of the pilot log: ***
[2025-12-01 03:36:26] 2025-12-01 08:35:32,330 | INFO     | monitor loop #5447: job 0:6893835417 is in state 'finished'
[2025-12-01 03:36:26] 2025-12-01 08:35:32,332 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:36:26] 2025-12-01 08:35:33,154 | INFO     | time since job start (108776s) is within the limit (172800.0s)
[2025-12-01 03:36:26] 2025-12-01 08:35:34,836 | INFO     | monitor loop #5448: job 0:6893835417 is in state 'finished'
[2025-12-01 03:36:26] 2025-12-01 08:35:34,836 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:36:26] 2025-12-01 08:35:35,183 | INFO     | time since job start (108778s) is within the limit (172800.0s)
[2025-12-01 03:36:26] 2025-12-01 08:35:37,191 | INFO     | time since job start (108780s) is within the limit (172800.0s)
[2025-12-01 03:36:26] 2025-12-01 08:35:37,371 | INFO     | monitor loop #5449: job 0:6893835417 is in state 'finished'
[2025-12-01 03:36:26] 2025-12-01 08:35:37,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:36:26] 2025-12-01 08:35:39,209 | INFO     | time since job start (108782s) is within the limit (172800.0s)
[2025-12-01 03:36:26] 2025-12-01 08:35:39,906 | INFO     | monitor loop #5450: job 0:6893835417 is in state 'finished'
[2025-12-01 03:36:26] 2025-12-01 08:35:39,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:36:26] 2025-12-01 08:35:40,303 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-01 03:36:26] 2025-12-01 08:35:40,326 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2580.414875
[2025-12-01 03:36:26] 2025-12-01 08:35:40,352 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893835417/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 03:36:26] 2025-12-01 08:35:40,353 | INFO     | extracted standard info from prmon json
[2025-12-01 03:36:26] 2025-12-01 08:35:40,353 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 03:36:26] 2025-12-01 08:35:40,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 03:36:26] 2025-12-01 08:35:40,383 | INFO     | fitting pss+swap vs Time
[2025-12-01 03:36:26] 2025-12-01 08:35:40,386 | INFO     | sum of square deviations: 1754726568570.6448
[2025-12-01 03:36:26] 2025-12-01 08:35:40,817 | INFO     | sum of deviations: 3163453363641.92
[2025-12-01 03:36:26] 2025-12-01 08:35:40,818 | INFO     | mean x: 1764523744.885522
[2025-12-01 03:36:26] 2025-12-01 08:35:40,818 | INFO     | mean y: 2921740.0241301907
[2025-12-01 03:36:26] 2025-12-01 08:35:40,818 | INFO     | intersect: -3178194153.4515615
[2025-12-01 03:36:26] 2025-12-01 08:35:41,044 | INFO     | chi2: 23.571145091022412
[2025-12-01 03:36:26] 2025-12-01 08:35:41,125 | INFO     | sum of square deviations: 1740002266813.387
[2025-12-01 03:36:26] 2025-12-01 08:35:41,229 | INFO     | time since job start (108784s) is within the limit (172800.0s)
[2025-12-01 03:36:26] 2025-12-01 08:35:42,474 | INFO     | sum of deviations: 3779842277328.5767
[2025-12-01 03:36:26] 2025-12-01 08:35:42,490 | INFO     | mean x: 1764523592.4085538
[2025-12-01 03:36:26] 2025-12-01 08:35:42,491 | INFO     | mean y: 2928121.843556556
[2025-12-01 03:36:26] 2025-12-01 08:35:42,491 | INFO     | intersect: -3830182329.2963657
[2025-12-01 03:36:26] 2025-12-01 08:35:42,493 | INFO     | chi2: 20.15733685690401
[2025-12-01 03:36:26] 2025-12-01 08:35:42,494 | INFO     | current chi2=20.15733685690401 (change=14.482996990327068 %)
[2025-12-01 03:36:26] 2025-12-01 08:35:42,494 | INFO     | right removable region: 1776
[2025-12-01 03:36:26] 2025-12-01 08:35:42,526 | INFO     | sum of square deviations: 1739993260025.572
[2025-12-01 03:36:26] 2025-12-01 08:35:42,545 | INFO     | monitor loop #5451: job 0:6893835417 is in state 'finished'
[2025-12-01 03:36:26] 2025-12-01 08:35:42,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 03:36:26] 2025-12-01 08:35:43,166 | INFO     | sum of deviations: 2562607266632.4023
[2025-12-01 03:36:26] 2025-12-01 08:35:43,167 | INFO     | mean x: 1764523897.4091165
[2025-12-01 03:36:26] 2025-12-01 08:35:43,167 | INFO     | mean y: 2927958.999437254
[2025-12-01 03:36:26] 2025-12-01 08:35:43,167 | INFO     | intersect: -2595807257.6994333
[2025-12-01 03:36:26] 2025-12-01 08:35:43,238 | INFO     | chi2: 20.799788443238388
[2025-12-01 03:36:26] 2025-12-01 08:35:43,239 | INFO     | current chi2=20.799788443238388 (change=11.757412026790147 %)
[2025-12-01 03:36:26] 2025-12-01 08:35:43,239 | INFO     | left removable region: 10
[2025-12-01 03:36:26] 2025-12-01 08:35:43,280 | INFO     | sum of square deviations: 1707881637430.1455
[2025-12-01 03:36:26] 2025-12-01 08:35:43,408 | INFO     | time since job start (108786s) is within the limit (172800.0s)
[2025-12-01 03:36:26] 2025-12-01 08:35:44,406 | INFO     | sum of deviations: 2963871404454.0166
[2025-12-01 03:36:26] 2025-12-01 08:35:44,407 | INFO     | mean x: 1764523866.9597962
[2025-12-01 03:36:26] 2025-12-01 08:35:44,407 | INFO     | mean y: 2938925.915628539
[2025-12-01 03:36:26] 2025-12-01 08:35:44,407 | INFO     | intersect: -3059229855.070911
[2025-12-01 03:36:26] 2025-12-01 08:35:44,520 | INFO     | chi2: 15.922657800013445
[2025-12-01 03:36:26] 2025-12-01 08:35:44,521 | INFO     | current memory leak: 1.74 B/s (using 1766 data points, chi2=15.92)
[2025-12-01 03:36:26] 2025-12-01 08:35:44,523 | INFO     | could have reported an average CPU frequency of 2653 MHz (62 samples)
[2025-12-01 03:36:26] 2025-12-01 08:35:44,523 | INFO     | ..............................
[2025-12-01 03:36:26] 2025-12-01 08:35:44,523 | INFO     | . Timing measurements:
[2025-12-01 03:36:26] 2025-12-01 08:35:44,523 | INFO     | . get job = 0 s
[2025-12-01 03:36:26] 2025-12-01 08:35:44,523 | INFO     | . initial setup = 3 s
[2025-12-01 03:36:26] 2025-12-01 08:35:44,523 | INFO     | . payload setup = 12 s
[2025-12-01 03:36:26] 2025-12-01 08:35:44,523 | INFO     | . stage-in = 0 s
[2025-12-01 03:36:26] 2025-12-01 08:35:44,524 | INFO     | . payload execution = 108674 s
[2025-12-01 03:36:26] 2025-12-01 08:35:44,524 | INFO     | . stage-out = 16 s
[2025-12-01 03:36:26] 2025-12-01 08:35:44,524 | INFO     | . log creation = 4 s
[2025-12-01 03:36:26] 2025-12-01 08:35:44,524 | INFO     | ..............................
[2025-12-01 03:36:26] 2025-12-01 08:35:45,613 | INFO     | time since job start (108788s) is within the limit (172800.0s)
[2025-12-01 03:36:26] 2025-12-01 08:35:46,707 | INFO     | 
[2025-12-01 03:36:26] 2025-12-01 08:35:46,708 | INFO     | job summary report
[2025-12-01 03:36:26] 2025-12-01 08:35:46,708 | INFO     | --------------------------------------------------
[2025-12-01 03:36:26] 2025-12-01 08:35:46,708 | INFO     | PanDA job id: 6893835417
[2025-12-01 03:36:26] 2025-12-01 08:35:46,708 | INFO     | task id: 47523449
[2025-12-01 03:36:26] 2025-12-01 08:35:46,708 | INFO     | errors: (none)
[2025-12-01 03:36:26] 2025-12-01 08:35:46,708 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 03:36:26] 2025-12-01 08:35:46,748 | INFO     | pilot state: finished 
[2025-12-01 03:36:26] 2025-12-01 08:35:46,749 | INFO     | transexitcode: 0
[2025-12-01 03:36:26] 2025-12-01 08:35:46,749 | INFO     | exeerrorcode: 0
[2025-12-01 03:36:26] 2025-12-01 08:35:46,749 | INFO     | exeerrordiag: 
[2025-12-01 03:36:26] 2025-12-01 08:35:46,749 | INFO     | exitcode: 0
[2025-12-01 03:36:26] 2025-12-01 08:35:46,749 | INFO     | exitmsg: OK
[2025-12-01 03:36:26] 2025-12-01 08:35:46,749 | INFO     | cpuconsumptiontime: 260517 s
[2025-12-01 03:36:26] 2025-12-01 08:35:46,749 | INFO     | nevents: 1000
[2025-12-01 03:36:26] 2025-12-01 08:35:46,749 | INFO     | neventsw: 0
[2025-12-01 03:36:26] 2025-12-01 08:35:46,749 | INFO     | pid: 576491
[2025-12-01 03:36:26] 2025-12-01 08:35:46,749 | INFO     | pgrp: 576491
[2025-12-01 03:36:26] 2025-12-01 08:35:46,749 | INFO     | corecount: 8
[2025-12-01 03:36:26] 2025-12-01 08:35:46,750 | INFO     | event service: False
[2025-12-01 03:36:26] 2025-12-01 08:35:46,750 | INFO     | sizes: {0: 2284084, 1: 2284339, 12: 2284339, 14: 2284629, 22: 2284657, 108691: 2356902, 108692: 2357029, 108709: 2366079, 108712: 2366135, 108755: 2366381}
[2025-12-01 03:36:26] 2025-12-01 08:35:46,750 | INFO     | --------------------------------------------------
[2025-12-01 03:36:26] 2025-12-01 08:35:46,750 | INFO     | 
[2025-12-01 03:36:26] 2025-12-01 08:35:46,750 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-01 03:36:26] 2025-12-01 08:35:46,993 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,993 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,993 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,993 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,993 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,993 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,993 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,993 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,993 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,993 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,994 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,994 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,994 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,994 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,994 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,994 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,994 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 03:36:26] 2025-12-01 08:35:46,994 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 03:36:26] 2025-12-01 08:35:46,994 | INFO     | job 6893835417 has completed (purged errors)
[2025-12-01 03:36:26] 2025-12-01 08:35:46,995 | INFO     | overall cleanup function is called
[2025-12-01 03:36:26] 2025-12-01 08:35:48,072 | INFO     | --- collectZombieJob: --- 10, [576491]
[2025-12-01 03:36:26] 2025-12-01 08:35:48,072 | INFO     | zombie collector waiting for pid 576491
[2025-12-01 03:36:26] 2025-12-01 08:35:48,073 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 03:36:26] 2025-12-01 08:35:48,073 | INFO     | collected zombie processes
[2025-12-01 03:36:26] 2025-12-01 08:35:48,073 | INFO     | will attempt to kill all subprocesses of pid=576491
[2025-12-01 03:36:26] 2025-12-01 08:35:51,096 | INFO     | process IDs to be killed: [576491] (in reverse order)
[2025-12-01 03:36:26] 2025-12-01 08:35:52,156 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 03:36:26] 2025-12-01 08:35:52,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 03:36:26] 2025-12-01 08:35:52,258 | INFO     | did not find any defunct processes belonging to 576491
[2025-12-01 03:36:26] 2025-12-01 08:35:52,386 | INFO     | did not find any defunct processes belonging to 576491
[2025-12-01 03:36:26] 2025-12-01 08:35:52,401 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 03:36:26] 2025-12-01 08:35:52,401 | INFO     | ready for new job
[2025-12-01 03:36:26] 2025-12-01 08:35:52,401 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 03:36:26] 2025-12-01 08:35:52,438 | INFO     | ***************************************
[2025-12-01 03:36:26] 2025-12-01 08:35:52,438 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 03:36:26] 2025-12-01 08:35:52,438 | INFO     | ***************************************
[2025-12-01 03:36:26] 2025-12-01 08:35:52,438 | INFO     | 
[2025-12-01 03:36:26] 2025-12-01 08:35:52,463 | INFO     | architecture information:
[2025-12-01 03:36:26] 2025-12-01 08:35:52,490 | INFO     | executing command: cat /etc/os-release
[2025-12-01 03:36:26] 2025-12-01 08:35:52,611 | INFO     | cat /etc/os-release:
[2025-12-01 03:36:26] NAME="CentOS Linux"
[2025-12-01 03:36:26] VERSION="7 (Core)"
[2025-12-01 03:36:26] ID="centos"
[2025-12-01 03:36:26] ID_LIKE="rhel fedora"
[2025-12-01 03:36:26] VERSION_ID="7"
[2025-12-01 03:36:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 03:36:26] ANSI_COLOR="0;31"
[2025-12-01 03:36:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 03:36:26] HOME_URL="https://www.centos.org/"
[2025-12-01 03:36:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 03:36:26] 
[2025-12-01 03:36:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 03:36:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 03:36:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 03:36:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 03:36:26] 
[2025-12-01 03:36:26] 2025-12-01 08:35:52,611 | INFO     | ***************************************
[2025-12-01 03:36:26] 2025-12-01 08:35:53,115 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-01 03:36:26] 2025-12-01 08:35:53,206 | INFO     | sufficient remaining disk space (67725426688 B)
[2025-12-01 03:36:26] 2025-12-01 08:35:53,206 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 03:36:26] 2025-12-01 08:35:53,206 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 03:36:26] 2025-12-01 08:35:53,206 | INFO     | update_server=False
[2025-12-01 03:36:26] 2025-12-01 08:35:53,206 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 03:36:26] 2025-12-01 08:35:53,908 | INFO     | all data control threads have been joined
[2025-12-01 03:36:26] 2025-12-01 08:35:53,962 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 03:36:26] 2025-12-01 08:35:54,047 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 03:36:26] 2025-12-01 08:35:54,048 | INFO     | aborting loop
[2025-12-01 03:36:26] 2025-12-01 08:35:54,235 | INFO     | [job] retrieve thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:54,256 | INFO     | all job control threads have been joined
[2025-12-01 03:36:26] 2025-12-01 08:35:54,366 | INFO     | [payload] validate_post thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:54,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 03:36:26] 2025-12-01 08:35:54,683 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:54,684 | INFO     | [job] validate thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:54,720 | INFO     | all payload control threads have been joined
[2025-12-01 03:36:26] 2025-12-01 08:35:54,870 | INFO     | [data] copytool_in thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:54,871 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:54,876 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:54,877 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:54,914 | INFO     | [data] control thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:55,065 | INFO     | [job] job monitor thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:55,310 | INFO     | [job] control thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:55,348 | INFO     | [payload] failed_post thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:55,623 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 03:36:26] 2025-12-01 08:35:55,726 | INFO     | [payload] control thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:55,969 | INFO     | [data] copytool_out thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:56,629 | INFO     | [job] queue monitor thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:35:58,680 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 03:36:26] 2025-12-01 08:36:01,720 | INFO     | [monitor] cgroup control has ended
[2025-12-01 03:36:26] 2025-12-01 08:36:02,592 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140093036627776)>', '<ExcThread(monitor, started 140092672816896)>']
[2025-12-01 03:36:26] 2025-12-01 08:36:07,629 | INFO     | all workflow threads have been joined
[2025-12-01 03:36:26] 2025-12-01 08:36:07,630 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 03:36:26] 2025-12-01 08:36:07,630 | INFO     | traces error code: 0
[2025-12-01 03:36:26] 2025-12-01 08:36:07,630 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 03:36:26] 2025-12-01 08:36:22,499 | INFO     | PID=569430 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 03:36:26] 2025-12-01 08:36:22,500 | INFO     | .. there are 52 such processes running
[2025-12-01 03:36:26] 2025-12-01 08:36:22,508 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 03:36:26] 2025-12-01 08:36:22,508 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 03:36:26] 2025-12-01 08:36:22,508 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 03:36:26] 2025-12-01 08:36:22,508 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 03:36:26] 2025-12-01 08:36:22,508 | INFO     | [monitor] control thread has ended
[2025-12-01 03:36:26] 2025-12-01 08:36:24,047 [wrapper] ==== pilot stdout END ====
[2025-12-01 03:36:26] 2025-12-01 08:36:24,074 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 03:36:26] 2025-12-01 08:36:24,112 [wrapper] pilotpid: 569430
[2025-12-01 03:36:26] 2025-12-01 08:36:24,149 [wrapper] Pilot exit status: 0
[2025-12-01 03:36:26] 2025-12-01 08:36:24,221 [wrapper] pandaids: 6893835417
[2025-12-01 03:36:26] 2025-12-01 08:36:25,052 [wrapper] cleanup supervisor_pilot 3583280 569431
[2025-12-01 03:36:26] 2025-12-01 08:36:25,069 [wrapper] Test setup, not cleaning
[2025-12-01 03:36:26] 2025-12-01 08:36:25,099 [wrapper] apfmon messages muted
[2025-12-01 03:36:26] 2025-12-01 08:36:25,124 [wrapper] ==== wrapper stdout END ====
[2025-12-01 03:36:26] 2025-12-01 08:36:25,139 [wrapper] ==== wrapper stderr END ====
[2025-12-01 03:36:26]  *** Error codes and diagnostics ***
[2025-12-01 03:36:26]     "exeErrorCode": 0,
[2025-12-01 03:36:26]     "exeErrorDiag": "",
[2025-12-01 03:36:26]     "pilotErrorCode": 0,
[2025-12-01 03:36:26]     "pilotErrorDiag": "",
[2025-12-01 03:36:26]  *** Listing of results directory ***
[2025-12-01 03:36:26] total 1345768
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:14 queuedata.json
[2025-12-01 03:36:26] -rwx------. 1 boincer umatlas     36292 Nov 20 05:14 runpilot2-wrapper.sh
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas       100 Nov 29 21:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 03:36:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 21:22 run_atlas
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas       105 Nov 29 21:22 job.xml
[2025-12-01 03:36:26] -rw-r--r--. 2 boincer umatlas 409246786 Nov 29 21:22 EVNT.47493127._000090.pool.root.1
[2025-12-01 03:36:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 21:22 start_atlas.sh
[2025-12-01 03:36:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 21:22 shared
[2025-12-01 03:36:26] -rw-r--r--. 2 boincer umatlas    590101 Nov 29 21:22 input.tar.gz
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas         0 Nov 29 21:22 boinc_lockfile
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas      2784 Nov 29 21:22 pandaJob.out
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas        57 Nov 29 21:22 setup.sh.local
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas    991772 Nov 29 21:22 agis_schedconf.cvmfs.json
[2025-12-01 03:36:26] drwx------. 5 boincer umatlas      4096 Nov 29 21:22 pilot3
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas       534 Dec  1 02:59 boinc_task_state.xml
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas      6879 Dec  1 03:30 init_data.xml
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas 935251688 Dec  1 03:32 HITS.47523449._000895.pool.root.1
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas      1065 Dec  1 03:34 memory_monitor_summary.json
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas   1516240 Dec  1 03:34 agis_ddmendpoints.agis.ALL.json
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas   2590024 Dec  1 03:34 log.47523449._000895.job.log.tgz.1
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas      7966 Dec  1 03:35 heartbeat.json
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas        95 Dec  1 03:36 pilot_heartbeat.json
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas       822 Dec  1 03:36 pilotlog.txt
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas      8192 Dec  1 03:36 boinc_mmap_file
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas        29 Dec  1 03:36 wrapper_checkpoint.txt
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas  12237136 Dec  1 03:36 log.47523449._000895.job.log.1
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas       353 Dec  1 03:36 output.list
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas       620 Dec  1 03:36 runtime_log
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas  14848000 Dec  1 03:36 result.tar.gz
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas      9349 Dec  1 03:36 runtime_log.err
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas       665 Dec  1 03:36 ioHMDmlrGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKHGKDmec07Jm.diag
[2025-12-01 03:36:26] -rw-r--r--. 1 boincer umatlas     21805 Dec  1 03:36 stderr.txt
[2025-12-01 03:36:26] HITS file was successfully produced:
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas 935251688 Dec  1 03:32 shared/HITS.pool.root.1
[2025-12-01 03:36:26]  *** Contents of shared directory: ***
[2025-12-01 03:36:26] total 1328092
[2025-12-01 03:36:26] -rw-r--r--. 2 boincer umatlas 409246786 Nov 29 21:22 ATLAS.root_0
[2025-12-01 03:36:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 21:22 start_atlas.sh
[2025-12-01 03:36:26] -rw-r--r--. 2 boincer umatlas    590101 Nov 29 21:22 input.tar.gz
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas 935251688 Dec  1 03:32 HITS.pool.root.1
[2025-12-01 03:36:26] -rw-------. 1 boincer umatlas  14848000 Dec  1 03:36 result.tar.gz
03:36:27 (565447): run_atlas exited; CPU time 264968.045863
03:36:27 (565447): called boinc_finish(0)

</stderr_txt>
]]>

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