Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:49:11 (1793977): wrapper (7.7.26015): starting
13:49:11 (1793977): wrapper: running run_atlas (--nthreads 4)
[2025-12-02 13:49:11] Arguments: --nthreads 4
[2025-12-02 13:49:11] Threads: 4
[2025-12-02 13:49:11] Checking for CVMFS
[2025-12-02 13:49:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 13:49:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 13:49:11] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 13:49:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 13:49:11] 2.9.2.0 3127036 19998 101220 153550 2 81 36102008 36864001 0 130560 0 7976037 99.958 891448 1373 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-02 13:49:11] CVMFS is ok
[2025-12-02 13:49:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 13:49:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 13:49:11] Further information can be found at the LHC@home message board.
[2025-12-02 13:49:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 13:49:11] Checking for apptainer binary...
[2025-12-02 13:49:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 13:49:11] Running /usr/bin/apptainer --version
[2025-12-02 13:49:11] apptainer version 1.4.1-1.1
[2025-12-02 13:49:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 13:49:11] thA334
[2025-12-02 13:49:11] apptainer works
[2025-12-02 13:49:11] Set ATHENA_PROC_NUMBER=4
[2025-12-02 13:49:11] Set ATHENA_CORE_NUMBER=4
[2025-12-02 13:49:11] Starting ATLAS job with PandaID=6893852283
[2025-12-02 13:49:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 20:43:57]  *** The last 200 lines of the pilot log: ***
[2025-12-02 20:43:57] 2025-12-02 19:43:28,063 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 20:43:57] 2025-12-02 19:43:28,063 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 20:43:57] 2025-12-02 19:43:28,063 | INFO     | job 6893852283 has completed (purged errors)
[2025-12-02 20:43:57] 2025-12-02 19:43:28,064 | INFO     | overall cleanup function is called
[2025-12-02 20:43:57] 2025-12-02 19:43:29,073 | INFO     | --- collectZombieJob: --- 10, [1804330]
[2025-12-02 20:43:57] 2025-12-02 19:43:29,073 | INFO     | zombie collector waiting for pid 1804330
[2025-12-02 20:43:57] 2025-12-02 19:43:29,073 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 20:43:57] 2025-12-02 19:43:29,073 | INFO     | collected zombie processes
[2025-12-02 20:43:57] 2025-12-02 19:43:29,073 | INFO     | will attempt to kill all subprocesses of pid=1804330
[2025-12-02 20:43:57] 2025-12-02 19:43:29,118 | INFO     | process IDs to be killed: [1804330] (in reverse order)
[2025-12-02 20:43:57] 2025-12-02 19:43:29,150 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 20:43:57] 2025-12-02 19:43:29,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 20:43:57] 2025-12-02 19:43:29,152 | INFO     | did not find any defunct processes belonging to 1804330
[2025-12-02 20:43:57] 2025-12-02 19:43:29,153 | INFO     | did not find any defunct processes belonging to 1804330
[2025-12-02 20:43:57] 2025-12-02 19:43:29,154 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 20:43:57] 2025-12-02 19:43:29,154 | INFO     | ready for new job
[2025-12-02 20:43:57] 2025-12-02 19:43:29,154 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 20:43:57] 2025-12-02 19:43:29,155 | INFO     | ***************************************
[2025-12-02 20:43:57] 2025-12-02 19:43:29,155 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 20:43:57] 2025-12-02 19:43:29,155 | INFO     | ***************************************
[2025-12-02 20:43:57] 2025-12-02 19:43:29,155 | INFO     | 
[2025-12-02 20:43:57] 2025-12-02 19:43:29,156 | INFO     | architecture information:
[2025-12-02 20:43:57] 2025-12-02 19:43:29,156 | INFO     | executing command: cat /etc/os-release
[2025-12-02 20:43:57] 2025-12-02 19:43:29,169 | INFO     | cat /etc/os-release:
[2025-12-02 20:43:57] NAME="CentOS Linux"
[2025-12-02 20:43:57] VERSION="7 (Core)"
[2025-12-02 20:43:57] ID="centos"
[2025-12-02 20:43:57] ID_LIKE="rhel fedora"
[2025-12-02 20:43:57] VERSION_ID="7"
[2025-12-02 20:43:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 20:43:57] ANSI_COLOR="0;31"
[2025-12-02 20:43:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 20:43:57] HOME_URL="https://www.centos.org/"
[2025-12-02 20:43:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 20:43:57] 
[2025-12-02 20:43:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 20:43:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 20:43:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 20:43:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 20:43:57] 
[2025-12-02 20:43:57] 2025-12-02 19:43:29,169 | INFO     | ***************************************
[2025-12-02 20:43:57] 2025-12-02 19:43:29,672 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-02 20:43:57] 2025-12-02 19:43:29,690 | INFO     | sufficient remaining disk space (219949301760 B)
[2025-12-02 20:43:57] 2025-12-02 19:43:29,690 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 20:43:57] 2025-12-02 19:43:29,690 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 20:43:57] 2025-12-02 19:43:29,690 | INFO     | update_server=False
[2025-12-02 20:43:57] 2025-12-02 19:43:29,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 20:43:57] 2025-12-02 19:43:29,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:43:57] 2025-12-02 19:43:29,690 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-02 20:43:57] 2025-12-02 19:43:29,691 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 20:43:57] 2025-12-02 19:43:29,691 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 20:43:57] 2025-12-02 19:43:29,691 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 20:43:57] 2025-12-02 19:43:29,884 | INFO     | all job control threads have been joined
[2025-12-02 20:43:57] 2025-12-02 19:43:29,936 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 20:43:57] 2025-12-02 19:43:29,937 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 20:43:57] 2025-12-02 19:43:29,937 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:43:57] 2025-12-02 19:43:29,937 | INFO     | will abort loop
[2025-12-02 20:43:57] 2025-12-02 19:43:30,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 20:43:57] 2025-12-02 19:43:30,584 | INFO     | all data control threads have been joined
[2025-12-02 20:43:57] 2025-12-02 19:43:30,695 | INFO     | [job] retrieve thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:30,696 | INFO     | [job] queue monitor thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:30,715 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:30,806 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:30,890 | INFO     | [job] control thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:30,943 | INFO     | [job] job monitor thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:31,012 | INFO     | [data] copytool_in thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:31,123 | INFO     | all payload control threads have been joined
[2025-12-02 20:43:57] 2025-12-02 19:43:31,208 | INFO     | [payload] validate_post thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:31,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 20:43:57] 2025-12-02 19:43:31,590 | INFO     | [data] control thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:31,777 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:31,816 | INFO     | [payload] failed_post thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:32,127 | INFO     | [job] validate thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:32,129 | INFO     | [payload] control thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:32,215 | INFO     | [data] copytool_out thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:35,231 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:40,042 | INFO     | job.realtimelogging is not enabled
[2025-12-02 20:43:57] 2025-12-02 19:43:41,048 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 20:43:57] 2025-12-02 19:43:51,796 | INFO     | [monitor] cgroup control has ended
[2025-12-02 20:43:57] 2025-12-02 19:43:51,811 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140151612081984)>', '<ExcThread(monitor, started 140150713591552)>']
[2025-12-02 20:43:57] 2025-12-02 19:43:52,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 20:43:57] 2025-12-02 19:43:52,809 | INFO     | [monitor] control thread has ended
[2025-12-02 20:43:57] 2025-12-02 19:43:56,837 | INFO     | all workflow threads have been joined
[2025-12-02 20:43:57] 2025-12-02 19:43:56,837 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 20:43:57] 2025-12-02 19:43:56,837 | INFO     | traces error code: 0
[2025-12-02 20:43:57] 2025-12-02 19:43:56,837 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 20:43:57] 2025-12-02 19:43:56,904 [wrapper] ==== pilot stdout END ====
[2025-12-02 20:43:57] 2025-12-02 19:43:56,908 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 20:43:57] 2025-12-02 19:43:56,912 [wrapper] pilotpid: 1797771
[2025-12-02 20:43:57] 2025-12-02 19:43:56,916 [wrapper] Pilot exit status: 0
[2025-12-02 20:43:57] 2025-12-02 19:43:56,926 [wrapper] pandaids: 6893852283
[2025-12-02 20:43:57] 2025-12-02 19:43:56,947 [wrapper] cleanup supervisor_pilot 1849043 1797772
[2025-12-02 20:43:57] 2025-12-02 19:43:56,950 [wrapper] Test setup, not cleaning
[2025-12-02 20:43:57] 2025-12-02 19:43:56,954 [wrapper] apfmon messages muted
[2025-12-02 20:43:57] 2025-12-02 19:43:56,957 [wrapper] ==== wrapper stdout END ====
[2025-12-02 20:43:57] 2025-12-02 19:43:56,960 [wrapper] ==== wrapper stderr END ====
[2025-12-02 20:43:57]  *** Error codes and diagnostics ***
[2025-12-02 20:43:57]     "exeErrorCode": 0,
[2025-12-02 20:43:57]     "exeErrorDiag": "",
[2025-12-02 20:43:57]     "pilotErrorCode": 0,
[2025-12-02 20:43:57]     "pilotErrorDiag": "",
[2025-12-02 20:43:57]  *** Listing of results directory ***
[2025-12-02 20:43:57] total 1315104
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:54 pilot3.tar.gz
[2025-12-02 20:43:57] -rwx------ 1 boinc boinc     36292 Nov 20 12:56 runpilot2-wrapper.sh
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:56 queuedata.json
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc       100 Dec  2 13:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 20:43:57] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 13:49 run_atlas
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc       105 Dec  2 13:49 job.xml
[2025-12-02 20:43:57] -rw-r--r-- 2 boinc boinc 408855506 Dec  2 13:49 EVNT.47493127._000377.pool.root.1
[2025-12-02 20:43:57] -rw-r--r-- 2 boinc boinc    590100 Dec  2 13:49 input.tar.gz
[2025-12-02 20:43:57] -rw-r--r-- 2 boinc boinc     15847 Dec  2 13:49 start_atlas.sh
[2025-12-02 20:43:57] drwxrwx--x 2 boinc boinc      4096 Dec  2 13:49 shared
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc         0 Dec  2 13:49 boinc_setup_complete
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc      6369 Dec  2 13:49 init_data.xml
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc         0 Dec  2 13:49 boinc_lockfile
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc      2786 Dec  2 13:49 pandaJob.out
[2025-12-02 20:43:57] -rw------- 1 boinc boinc    986791 Dec  2 13:49 agis_schedconf.cvmfs.json
[2025-12-02 20:43:57] drwx------ 5 boinc boinc      4096 Dec  2 13:49 pilot3
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc       531 Dec  2 20:39 boinc_task_state.xml
[2025-12-02 20:43:57] -rw------- 1 boinc boinc        95 Dec  2 20:42 pilot_heartbeat.json
[2025-12-02 20:43:57] -rw------- 1 boinc boinc 924381337 Dec  2 20:42 HITS.47523449._003762.pool.root.1
[2025-12-02 20:43:57] -rw------- 1 boinc boinc      1028 Dec  2 20:43 memory_monitor_summary.json
[2025-12-02 20:43:57] -rw------- 1 boinc boinc   1516240 Dec  2 20:43 agis_ddmendpoints.agis.ALL.json
[2025-12-02 20:43:57] -rw------- 1 boinc boinc   1259948 Dec  2 20:43 log.47523449._003762.job.log.tgz.1
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc        28 Dec  2 20:43 wrapper_checkpoint.txt
[2025-12-02 20:43:57] -rw------- 1 boinc boinc      8583 Dec  2 20:43 heartbeat.json
[2025-12-02 20:43:57] -rw------- 1 boinc boinc      4814 Dec  2 20:43 pilotlog.txt
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc      8192 Dec  2 20:43 boinc_mmap_file
[2025-12-02 20:43:57] -rw------- 1 boinc boinc   3505725 Dec  2 20:43 log.47523449._003762.job.log.1
[2025-12-02 20:43:57] -rw------- 1 boinc boinc       353 Dec  2 20:43 output.list
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc       620 Dec  2 20:43 runtime_log
[2025-12-02 20:43:57] -rw------- 1 boinc boinc   4782080 Dec  2 20:43 result.tar.gz
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc      8898 Dec  2 20:43 runtime_log.err
[2025-12-02 20:43:57] -rw------- 1 boinc boinc       665 Dec  2 20:43 CC3NDmqRIg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBaGKDmq10Bwm.diag
[2025-12-02 20:43:57] -rw-r--r-- 1 boinc boinc     11487 Dec  2 20:43 stderr.txt
[2025-12-02 20:43:57] HITS file was successfully produced:
[2025-12-02 20:43:57] -rw------- 1 boinc boinc 924381337 Dec  2 20:42 shared/HITS.pool.root.1
[2025-12-02 20:43:57]  *** Contents of shared directory: ***
[2025-12-02 20:43:57] total 1307272
[2025-12-02 20:43:57] -rw-r--r-- 2 boinc boinc 408855506 Dec  2 13:49 ATLAS.root_0
[2025-12-02 20:43:57] -rw-r--r-- 2 boinc boinc    590100 Dec  2 13:49 input.tar.gz
[2025-12-02 20:43:57] -rw-r--r-- 2 boinc boinc     15847 Dec  2 13:49 start_atlas.sh
[2025-12-02 20:43:57] -rw------- 1 boinc boinc 924381337 Dec  2 20:42 HITS.pool.root.1
[2025-12-02 20:43:57] -rw------- 1 boinc boinc   4782080 Dec  2 20:43 result.tar.gz
20:43:58 (1793977): run_atlas exited; CPU time 97303.560892
20:43:58 (1793977): called boinc_finish(0)

</stderr_txt>
]]>

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