Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:53:03 (9263): wrapper (7.7.26015): starting
13:53:03 (9263): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 13:53:03] Arguments: --nthreads 12
[2025-11-29 13:53:03] Threads: 12
[2025-11-29 13:53:03] Checking for CVMFS
[2025-11-29 13:53:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 13:53:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 13:53:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 13:53:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 13:53:03] 2.11.2.0 2924 292340 97768 153452 0 81 13869415 20275201 1 130560 4 133301529 99.966 17530255 14177 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 13:53:03] CVMFS is ok
[2025-11-29 13:53:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 13:53:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 13:53:03] Further information can be found at the LHC@home message board.
[2025-11-29 13:53:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 13:53:03] Checking for apptainer binary...
[2025-11-29 13:53:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 13:53:03] Running /usr/bin/apptainer --version
[2025-11-29 13:53:03] apptainer version 1.3.2-1.el7
[2025-11-29 13:53:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 13:53:04] c-205-28.aglt2.org
[2025-11-29 13:53:04] apptainer works
[2025-11-29 13:53:04] Set ATHENA_PROC_NUMBER=12
[2025-11-29 13:53:04] Set ATHENA_CORE_NUMBER=12
[2025-11-29 13:53:04] Starting ATLAS job with PandaID=6897998762
[2025-11-29 13:53:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 21:05:08]  *** The last 200 lines of the pilot log: ***
[2025-11-29 21:05:08] 2025-11-30 02:04:35,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 21:05:08] 2025-11-30 02:04:35,310 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-29 21:05:08] 2025-11-30 02:04:35,313 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-11-29 21:05:08] 2025-11-30 02:04:35,315 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897998762/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 21:05:08] 2025-11-30 02:04:35,316 | INFO     | extracted standard info from prmon json
[2025-11-29 21:05:08] 2025-11-30 02:04:35,316 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 21:05:08] 2025-11-30 02:04:35,316 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 21:05:08] 2025-11-30 02:04:35,322 | INFO     | fitting pss+swap vs Time
[2025-11-29 21:05:08] 2025-11-30 02:04:35,323 | INFO     | sum of square deviations: 23635885766.8963
[2025-11-29 21:05:08] 2025-11-30 02:04:35,326 | INFO     | sum of deviations: 359848191779.1561
[2025-11-29 21:05:08] 2025-11-30 02:04:35,327 | INFO     | mean x: 1764455331.712264
[2025-11-29 21:05:08] 2025-11-30 02:04:35,327 | INFO     | mean y: 3404487.6816037735
[2025-11-29 21:05:08] 2025-11-30 02:04:35,327 | INFO     | intersect: -26859818107.556244
[2025-11-29 21:05:08] 2025-11-30 02:04:35,327 | INFO     | chi2: 6.777782257788013
[2025-11-29 21:05:08] 2025-11-30 02:04:35,328 | INFO     | sum of square deviations: 22809553536.667995
[2025-11-29 21:05:08] 2025-11-30 02:04:35,332 | INFO     | sum of deviations: 535518310245.8594
[2025-11-29 21:05:08] 2025-11-30 02:04:35,332 | INFO     | mean x: 1764455179.214797
[2025-11-29 21:05:08] 2025-11-30 02:04:35,332 | INFO     | mean y: 3436923.9904534607
[2025-11-29 21:05:08] 2025-11-30 02:04:35,332 | INFO     | intersect: -41422102359.74307
[2025-11-29 21:05:08] 2025-11-30 02:04:35,332 | INFO     | chi2: 3.3304216521055205
[2025-11-29 21:05:08] 2025-11-30 02:04:35,333 | INFO     | current chi2=3.3304216521055205 (change=50.86266384142544 %)
[2025-11-29 21:05:08] 2025-11-30 02:04:35,333 | INFO     | sum of square deviations: 22002710043.93475
[2025-11-29 21:05:08] 2025-11-30 02:04:35,337 | INFO     | sum of deviations: 601243425736.8691
[2025-11-29 21:05:08] 2025-11-30 02:04:35,337 | INFO     | mean x: 1764455026.7173913
[2025-11-29 21:05:08] 2025-11-30 02:04:35,337 | INFO     | mean y: 3449314.657004831
[2025-11-29 21:05:08] 2025-11-30 02:04:35,337 | INFO     | intersect: -48211837925.13649
[2025-11-29 21:05:08] 2025-11-30 02:04:35,337 | INFO     | chi2: 2.634728737474385
[2025-11-29 21:05:08] 2025-11-30 02:04:35,338 | INFO     | current chi2=2.634728737474385 (change=20.889034101472184 %)
[2025-11-29 21:05:08] 2025-11-30 02:04:35,338 | INFO     | right removable region: 413
[2025-11-29 21:05:08] 2025-11-30 02:04:35,338 | INFO     | sum of square deviations: 22809524256.095356
[2025-11-29 21:05:08] 2025-11-30 02:04:35,342 | INFO     | sum of deviations: 215801046285.98294
[2025-11-29 21:05:08] 2025-11-30 02:04:35,342 | INFO     | mean x: 1764455484.2124104
[2025-11-29 21:05:08] 2025-11-30 02:04:35,342 | INFO     | mean y: 3430995.8878281624
[2025-11-29 21:05:08] 2025-11-30 02:04:35,342 | INFO     | intersect: -16690092961.163834
[2025-11-29 21:05:08] 2025-11-30 02:04:35,343 | INFO     | chi2: 4.35269292123285
[2025-11-29 21:05:08] 2025-11-30 02:04:35,343 | INFO     | current chi2=4.35269292123285 (change=35.77998295487603 %)
[2025-11-29 21:05:08] 2025-11-30 02:04:35,343 | INFO     | sum of square deviations: 22002651970.794617
[2025-11-29 21:05:08] 2025-11-30 02:04:35,347 | INFO     | sum of deviations: 184082072627.7774
[2025-11-29 21:05:08] 2025-11-30 02:04:35,347 | INFO     | mean x: 1764455636.7125604
[2025-11-29 21:05:08] 2025-11-30 02:04:35,347 | INFO     | mean y: 3436982.888888889
[2025-11-29 21:05:08] 2025-11-30 02:04:35,347 | INFO     | intersect: -14758631294.014488
[2025-11-29 21:05:08] 2025-11-30 02:04:35,348 | INFO     | chi2: 4.301710940889185
[2025-11-29 21:05:08] 2025-11-30 02:04:35,348 | INFO     | current chi2=4.301710940889185 (change=1.1712744562100883 %)
[2025-11-29 21:05:08] 2025-11-30 02:04:35,348 | INFO     | left removable region: 20
[2025-11-29 21:05:08] 2025-11-30 02:04:35,349 | INFO     | sum of square deviations: 18821392565.740498
[2025-11-29 21:05:08] 2025-11-30 02:04:35,352 | INFO     | sum of deviations: 374446385495.6641
[2025-11-29 21:05:08] 2025-11-30 02:04:35,352 | INFO     | mean x: 1764455606.221374
[2025-11-29 21:05:08] 2025-11-30 02:04:35,352 | INFO     | mean y: 3494800.992366412
[2025-11-29 21:05:08] 2025-11-30 02:04:35,352 | INFO     | intersect: -35099860161.15735
[2025-11-29 21:05:08] 2025-11-30 02:04:35,353 | INFO     | chi2: 0.06493593874019424
[2025-11-29 21:05:08] 2025-11-30 02:04:35,353 | INFO     | current memory leak: 19.89 B/s (using 393 data points, chi2=0.06)
[2025-11-29 21:05:08] 2025-11-30 02:04:35,353 | INFO     | could have reported an average CPU frequency of 2402 MHz (18 samples)
[2025-11-29 21:05:08] 2025-11-30 02:04:35,354 | INFO     | ..............................
[2025-11-29 21:05:08] 2025-11-30 02:04:35,354 | INFO     | . Timing measurements:
[2025-11-29 21:05:08] 2025-11-30 02:04:35,354 | INFO     | . get job = 0 s
[2025-11-29 21:05:08] 2025-11-30 02:04:35,354 | INFO     | . initial setup = 2 s
[2025-11-29 21:05:08] 2025-11-30 02:04:35,354 | INFO     | . payload setup = 7 s
[2025-11-29 21:05:08] 2025-11-30 02:04:35,354 | INFO     | . stage-in = 0 s
[2025-11-29 21:05:08] 2025-11-30 02:04:35,354 | INFO     | . payload execution = 25838 s
[2025-11-29 21:05:08] 2025-11-30 02:04:35,354 | INFO     | . stage-out = 3 s
[2025-11-29 21:05:08] 2025-11-30 02:04:35,354 | INFO     | . log creation = 0 s
[2025-11-29 21:05:08] 2025-11-30 02:04:35,354 | INFO     | ..............................
[2025-11-29 21:05:08] 2025-11-30 02:04:35,433 | INFO     | 
[2025-11-29 21:05:08] 2025-11-30 02:04:35,434 | INFO     | job summary report
[2025-11-29 21:05:08] 2025-11-30 02:04:35,434 | INFO     | --------------------------------------------------
[2025-11-29 21:05:08] 2025-11-30 02:04:35,434 | INFO     | PanDA job id: 6897998762
[2025-11-29 21:05:08] 2025-11-30 02:04:35,434 | INFO     | task id: 47556161
[2025-11-29 21:05:08] 2025-11-30 02:04:35,434 | INFO     | errors: (none)
[2025-11-29 21:05:08] 2025-11-30 02:04:35,434 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 21:05:08] 2025-11-30 02:04:35,435 | INFO     | pilot state: finished 
[2025-11-29 21:05:08] 2025-11-30 02:04:35,435 | INFO     | transexitcode: 0
[2025-11-29 21:05:08] 2025-11-30 02:04:35,435 | INFO     | exeerrorcode: 0
[2025-11-29 21:05:08] 2025-11-30 02:04:35,435 | INFO     | exeerrordiag: 
[2025-11-29 21:05:08] 2025-11-30 02:04:35,435 | INFO     | exitcode: 0
[2025-11-29 21:05:08] 2025-11-30 02:04:35,435 | INFO     | exitmsg: OK
[2025-11-29 21:05:08] 2025-11-30 02:04:35,436 | INFO     | cpuconsumptiontime: 295637 s
[2025-11-29 21:05:08] 2025-11-30 02:04:35,436 | INFO     | nevents: 1000
[2025-11-29 21:05:08] 2025-11-30 02:04:35,436 | INFO     | neventsw: 0
[2025-11-29 21:05:08] 2025-11-30 02:04:35,436 | INFO     | pid: 19323
[2025-11-29 21:05:08] 2025-11-30 02:04:35,436 | INFO     | pgrp: 19323
[2025-11-29 21:05:08] 2025-11-30 02:04:35,437 | INFO     | corecount: 12
[2025-11-29 21:05:08] 2025-11-30 02:04:35,437 | INFO     | event service: False
[2025-11-29 21:05:08] 2025-11-30 02:04:35,437 | INFO     | sizes: {0: 2284264, 5: 2284526, 11: 2284582, 25849: 2321847, 25852: 2330841, 25853: 2330897, 25859: 2331271}
[2025-11-29 21:05:08] 2025-11-30 02:04:35,437 | INFO     | --------------------------------------------------
[2025-11-29 21:05:08] 2025-11-30 02:04:35,437 | INFO     | 
[2025-11-29 21:05:08] 2025-11-30 02:04:35,437 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-29 21:05:08] 2025-11-30 02:04:35,461 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,461 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,461 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,461 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,462 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,462 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,462 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,462 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,462 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,462 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,463 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,463 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,463 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,463 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,463 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,463 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,464 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,464 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 21:05:08] 2025-11-30 02:04:35,464 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,464 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 21:05:08] 2025-11-30 02:04:35,464 | INFO     | job 6897998762 has completed (purged errors)
[2025-11-29 21:05:08] 2025-11-30 02:04:35,464 | INFO     | overall cleanup function is called
[2025-11-29 21:05:08] 2025-11-30 02:04:36,479 | INFO     | --- collectZombieJob: --- 10, [19323]
[2025-11-29 21:05:08] 2025-11-30 02:04:36,564 | INFO     | zombie collector waiting for pid 19323
[2025-11-29 21:05:08] 2025-11-30 02:04:36,565 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 21:05:08] 2025-11-30 02:04:36,565 | INFO     | collected zombie processes
[2025-11-29 21:05:08] 2025-11-30 02:04:36,565 | INFO     | will attempt to kill all subprocesses of pid=19323
[2025-11-29 21:05:08] 2025-11-30 02:04:36,654 | INFO     | process IDs to be killed: [19323] (in reverse order)
[2025-11-29 21:05:08] 2025-11-30 02:04:36,706 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 21:05:08] 2025-11-30 02:04:36,706 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 21:05:08] 2025-11-30 02:04:36,709 | INFO     | did not find any defunct processes belonging to 19323
[2025-11-29 21:05:08] 2025-11-30 02:04:36,712 | INFO     | did not find any defunct processes belonging to 19323
[2025-11-29 21:05:08] 2025-11-30 02:04:36,714 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 21:05:08] 2025-11-30 02:04:36,715 | INFO     | ready for new job
[2025-11-29 21:05:08] 2025-11-30 02:04:36,715 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 21:05:08] 2025-11-30 02:04:36,717 | INFO     | ***************************************
[2025-11-29 21:05:08] 2025-11-30 02:04:36,717 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 21:05:08] 2025-11-30 02:04:36,717 | INFO     | ***************************************
[2025-11-29 21:05:08] 2025-11-30 02:04:36,717 | INFO     | 
[2025-11-29 21:05:08] 2025-11-30 02:04:36,718 | INFO     | architecture information:
[2025-11-29 21:05:08] 2025-11-30 02:04:36,719 | INFO     | executing command: cat /etc/os-release
[2025-11-29 21:05:08] 2025-11-30 02:04:36,736 | INFO     | cat /etc/os-release:
[2025-11-29 21:05:08] NAME="CentOS Linux"
[2025-11-29 21:05:08] VERSION="7 (Core)"
[2025-11-29 21:05:08] ID="centos"
[2025-11-29 21:05:08] ID_LIKE="rhel fedora"
[2025-11-29 21:05:08] VERSION_ID="7"
[2025-11-29 21:05:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 21:05:08] ANSI_COLOR="0;31"
[2025-11-29 21:05:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 21:05:08] HOME_URL="https://www.centos.org/"
[2025-11-29 21:05:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 21:05:08] 
[2025-11-29 21:05:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 21:05:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 21:05:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 21:05:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 21:05:08] 
[2025-11-29 21:05:08] 2025-11-30 02:04:36,736 | INFO     | ***************************************
[2025-11-29 21:05:08] 2025-11-30 02:04:37,239 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-29 21:05:08] 2025-11-30 02:04:37,257 | INFO     | sufficient remaining disk space (28243394560 B)
[2025-11-29 21:05:08] 2025-11-30 02:04:37,258 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 21:05:08] 2025-11-30 02:04:37,258 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 21:05:08] 2025-11-30 02:04:37,258 | INFO     | update_server=False
[2025-11-29 21:05:08] 2025-11-30 02:04:37,258 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 21:05:08] 2025-11-30 02:04:37,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 21:05:08] 2025-11-30 02:04:37,350 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 21:05:08] 2025-11-30 02:04:37,474 | INFO     | all job control threads have been joined
[2025-11-29 21:05:08] 2025-11-30 02:04:37,715 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-29 21:05:08] 2025-11-30 02:04:37,715 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-29 21:05:08] 2025-11-30 02:04:37,715 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 21:05:08] 2025-11-30 02:04:37,715 | INFO     | will abort loop
[2025-11-29 21:05:08] 2025-11-30 02:04:38,055 | INFO     | all data control threads have been joined
[2025-11-29 21:05:08] 2025-11-30 02:04:38,264 | INFO     | [job] retrieve thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:38,264 | INFO     | [job] queue monitor thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:38,390 | INFO     | all payload control threads have been joined
[2025-11-29 21:05:08] 2025-11-30 02:04:38,479 | INFO     | [job] control thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:38,721 | INFO     | [job] job monitor thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:38,823 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:38,944 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:39,016 | INFO     | [job] validate thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:39,059 | INFO     | [data] control thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:39,355 | INFO     | [data] copytool_out thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:39,395 | INFO     | [payload] control thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:39,494 | INFO     | [payload] failed_post thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:39,542 | INFO     | [data] copytool_in thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:39,546 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:39,747 | INFO     | [payload] validate_post thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:40,185 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 21:05:08] 2025-11-30 02:04:44,191 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:04:47,502 | INFO     | job.realtimelogging is not enabled
[2025-11-29 21:05:08] 2025-11-30 02:04:48,507 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 21:05:08] 2025-11-30 02:05:02,303 | INFO     | [monitor] cgroup control has ended
[2025-11-29 21:05:08] 2025-11-30 02:05:03,277 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139708721710912)>', '<ExcThread(monitor, started 139708273243904)>']
[2025-11-29 21:05:08] 2025-11-30 02:05:06,752 | INFO     | PID=12946 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 21:05:08] 2025-11-30 02:05:06,752 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 21:05:08] 2025-11-30 02:05:06,753 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 21:05:08] 2025-11-30 02:05:06,753 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 21:05:08] 2025-11-30 02:05:06,753 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 21:05:08] 2025-11-30 02:05:06,753 | INFO     | [monitor] control thread has ended
[2025-11-29 21:05:08] 2025-11-30 02:05:08,303 | INFO     | all workflow threads have been joined
[2025-11-29 21:05:08] 2025-11-30 02:05:08,307 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 21:05:08] 2025-11-30 02:05:08,307 | INFO     | traces error code: 0
[2025-11-29 21:05:08] 2025-11-30 02:05:08,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 21:05:08] 2025-11-30 02:05:08,398 [wrapper] ==== pilot stdout END ====
[2025-11-29 21:05:08] 2025-11-30 02:05:08,402 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 21:05:08] 2025-11-30 02:05:08,406 [wrapper] pilotpid: 12946
[2025-11-29 21:05:08] 2025-11-30 02:05:08,409 [wrapper] Pilot exit status: 0
[2025-11-29 21:05:08] 2025-11-30 02:05:08,423 [wrapper] pandaids: 6897998762
[2025-11-29 21:05:08] 2025-11-30 02:05:08,461 [wrapper] cleanup supervisor_pilot  6055 12947
[2025-11-29 21:05:08] 2025-11-30 02:05:08,465 [wrapper] Test setup, not cleaning
[2025-11-29 21:05:08] 2025-11-30 02:05:08,469 [wrapper] apfmon messages muted
[2025-11-29 21:05:08] 2025-11-30 02:05:08,473 [wrapper] ==== wrapper stdout END ====
[2025-11-29 21:05:08] 2025-11-30 02:05:08,477 [wrapper] ==== wrapper stderr END ====
[2025-11-29 21:05:08]  *** Error codes and diagnostics ***
[2025-11-29 21:05:08]     "exeErrorCode": 0,
[2025-11-29 21:05:08]     "exeErrorDiag": "",
[2025-11-29 21:05:08]     "pilotErrorCode": 0,
[2025-11-29 21:05:08]     "pilotErrorDiag": "",
[2025-11-29 21:05:08]  *** Listing of results directory ***
[2025-11-29 21:05:08] total 1313740
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-29 21:05:08] -rwx------ 1 boincer umatlas     36292 Nov 25 21:32 runpilot2-wrapper.sh
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 21:32 queuedata.json
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas       100 Nov 29 13:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 21:05:08] -rwxr-xr-x 1 boincer umatlas      7986 Nov 29 13:53 run_atlas
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas       105 Nov 29 13:53 job.xml
[2025-11-29 21:05:08] -rw-r--r-- 2 boincer umatlas 410752273 Nov 29 13:53 EVNT.47483658._002379.pool.root.1
[2025-11-29 21:05:08] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 13:53 start_atlas.sh
[2025-11-29 21:05:08] drwxrwx--x 2 boincer umatlas      4096 Nov 29 13:53 shared
[2025-11-29 21:05:08] -rw-r--r-- 2 boincer umatlas    590105 Nov 29 13:53 input.tar.gz
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas         0 Nov 29 13:53 boinc_lockfile
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas      2785 Nov 29 13:53 pandaJob.out
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas        57 Nov 29 13:53 setup.sh.local
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas    991834 Nov 29 13:53 agis_schedconf.cvmfs.json
[2025-11-29 21:05:08] drwx------ 5 boincer umatlas      4096 Nov 29 13:53 pilot3
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas       533 Nov 29 20:53 boinc_task_state.xml
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas      5956 Nov 29 21:00 init_data.xml
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas 918940951 Nov 29 21:03 HITS.47556161._003616.pool.root.1
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas        95 Nov 29 21:04 pilot_heartbeat.json
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas      1061 Nov 29 21:04 memory_monitor_summary.json
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas   1516240 Nov 29 21:04 agis_ddmendpoints.agis.ALL.json
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas   2191051 Nov 29 21:04 log.47556161._003616.job.log.tgz.1
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas      8668 Nov 29 21:04 heartbeat.json
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas      8192 Nov 29 21:04 boinc_mmap_file
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas        29 Nov 29 21:04 wrapper_checkpoint.txt
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas      5004 Nov 29 21:05 pilotlog.txt
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas   3633209 Nov 29 21:05 log.47556161._003616.job.log.1
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas       353 Nov 29 21:05 output.list
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas       620 Nov 29 21:05 runtime_log
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas   5847040 Nov 29 21:05 result.tar.gz
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas      9345 Nov 29 21:05 runtime_log.err
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas       670 Nov 29 21:05 K1kLDm0VKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDkMKDmHjFb4n.diag
[2025-11-29 21:05:08] -rw-r--r-- 1 boincer umatlas     21279 Nov 29 21:05 stderr.txt
[2025-11-29 21:05:08] HITS file was successfully produced:
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas 918940951 Nov 29 21:03 shared/HITS.pool.root.1
[2025-11-29 21:05:08]  *** Contents of shared directory: ***
[2025-11-29 21:05:08] total 1304848
[2025-11-29 21:05:08] -rw-r--r-- 2 boincer umatlas 410752273 Nov 29 13:53 ATLAS.root_0
[2025-11-29 21:05:08] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 13:53 start_atlas.sh
[2025-11-29 21:05:08] -rw-r--r-- 2 boincer umatlas    590105 Nov 29 13:53 input.tar.gz
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas 918940951 Nov 29 21:03 HITS.pool.root.1
[2025-11-29 21:05:08] -rw------- 1 boincer umatlas   5847040 Nov 29 21:05 result.tar.gz
21:05:10 (9263): run_atlas exited; CPU time 288798.446913
21:05:10 (9263): called boinc_finish(0)

</stderr_txt>
]]>

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