Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:04:03 (1941300): wrapper (7.7.26015): starting
20:04:03 (1941300): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 20:04:03] Arguments: --nthreads 8
[2025-11-29 20:04:03] Threads: 8
[2025-11-29 20:04:03] Checking for CVMFS
[2025-11-29 20:04:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 20:04:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 20:04:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 20:04:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 20:04:04] 2.13.2.0 7156 40415 249300 153462 3 739 32178020 40960001 24162 16776704 0 198497743 99.639 196877226 37935 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 20:04:04] CVMFS is ok
[2025-11-29 20:04:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 20:04:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 20:04:04] Further information can be found at the LHC@home message board.
[2025-11-29 20:04:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 20:04:04] Checking for apptainer binary...
[2025-11-29 20:04:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 20:04:04] Running /usr/bin/apptainer --version
[2025-11-29 20:04:04] apptainer version 1.4.4-1.el9
[2025-11-29 20:04:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 20:04:05] c-212-18.aglt2.org
[2025-11-29 20:04:05] apptainer works
[2025-11-29 20:04:05] Set ATHENA_PROC_NUMBER=8
[2025-11-29 20:04:05] Set ATHENA_CORE_NUMBER=8
[2025-11-29 20:04:05] Starting ATLAS job with PandaID=6898378242
[2025-11-29 20:04:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 21:41:29]  *** The last 200 lines of the pilot log: ***
[2025-11-30 21:41:29] 2025-12-01 02:40:24,305 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-30 21:41:29] 2025-12-01 02:40:25,568 | INFO     | monitor loop #5110: job 0:6898378242 is in state 'finished'
[2025-11-30 21:41:29] 2025-12-01 02:40:25,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 21:41:29] 2025-12-01 02:40:26,235 | INFO     | time since job start (92151s) is within the limit (172800.0s)
[2025-11-30 21:41:29] 2025-12-01 02:40:28,085 | INFO     | monitor loop #5111: job 0:6898378242 is in state 'finished'
[2025-11-30 21:41:29] 2025-12-01 02:40:28,086 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 21:41:29] 2025-12-01 02:40:28,240 | INFO     | time since job start (92153s) is within the limit (172800.0s)
[2025-11-30 21:41:29] 2025-12-01 02:40:30,248 | INFO     | time since job start (92155s) is within the limit (172800.0s)
[2025-11-30 21:41:29] 2025-12-01 02:40:30,589 | INFO     | monitor loop #5112: job 0:6898378242 is in state 'finished'
[2025-11-30 21:41:29] 2025-12-01 02:40:30,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 21:41:29] 2025-12-01 02:40:31,558 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 21:41:29] 2025-12-01 02:40:31,614 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3203.072635416666
[2025-11-30 21:41:29] 2025-12-01 02:40:31,628 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898378242/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 21:41:29] 2025-12-01 02:40:31,628 | INFO     | extracted standard info from prmon json
[2025-11-30 21:41:29] 2025-12-01 02:40:31,628 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 21:41:29] 2025-12-01 02:40:31,629 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 21:41:29] 2025-12-01 02:40:31,647 | INFO     | fitting pss+swap vs Time
[2025-11-30 21:41:29] 2025-12-01 02:40:31,649 | INFO     | sum of square deviations: 1067548691587.8035
[2025-11-30 21:41:29] 2025-12-01 02:40:31,691 | INFO     | sum of deviations: 4013431039689.7285
[2025-11-30 21:41:29] 2025-12-01 02:40:31,692 | INFO     | mean x: 1764510748.6198676
[2025-11-30 21:41:29] 2025-12-01 02:40:31,692 | INFO     | mean y: 2947980.2086092713
[2025-11-30 21:41:29] 2025-12-01 02:40:31,692 | INFO     | intersect: -6630699987.49599
[2025-11-30 21:41:29] 2025-12-01 02:40:31,693 | INFO     | chi2: 13.844487795231645
[2025-11-30 21:41:29] 2025-12-01 02:40:31,694 | INFO     | sum of square deviations: 1056980353510.1553
[2025-11-30 21:41:29] 2025-12-01 02:40:31,735 | INFO     | sum of deviations: 4496339472888.55
[2025-11-30 21:41:29] 2025-12-01 02:40:31,736 | INFO     | mean x: 1764510596.133555
[2025-11-30 21:41:29] 2025-12-01 02:40:31,736 | INFO     | mean y: 2954948.3355481727
[2025-11-30 21:41:29] 2025-12-01 02:40:31,736 | INFO     | intersect: -7503181393.156235
[2025-11-30 21:41:29] 2025-12-01 02:40:31,737 | INFO     | chi2: 11.076681339392898
[2025-11-30 21:41:29] 2025-12-01 02:40:31,737 | INFO     | current chi2=11.076681339392898 (change=19.99211886186242 %)
[2025-11-30 21:41:29] 2025-12-01 02:40:31,737 | INFO     | right removable region: 1504
[2025-11-30 21:41:29] 2025-12-01 02:40:31,738 | INFO     | sum of square deviations: 1056976558700.1561
[2025-11-30 21:41:29] 2025-12-01 02:40:31,782 | INFO     | sum of deviations: 3409137602853.423
[2025-11-30 21:41:29] 2025-12-01 02:40:31,782 | INFO     | mean x: 1764510901.133555
[2025-11-30 21:41:29] 2025-12-01 02:40:31,782 | INFO     | mean y: 2956696.7242524917
[2025-11-30 21:41:29] 2025-12-01 02:40:31,783 | INFO     | intersect: -5688239020.138992
[2025-11-30 21:41:29] 2025-12-01 02:40:31,784 | INFO     | chi2: 9.947966214741227
[2025-11-30 21:41:29] 2025-12-01 02:40:31,784 | INFO     | current chi2=9.947966214741227 (change=28.144931312175146 %)
[2025-11-30 21:41:29] 2025-12-01 02:40:31,785 | INFO     | sum of square deviations: 1046474610383.0265
[2025-11-30 21:41:29] 2025-12-01 02:40:31,826 | INFO     | sum of deviations: 3134833404426.2915
[2025-11-30 21:41:29] 2025-12-01 02:40:31,827 | INFO     | mean x: 1764511053.646
[2025-11-30 21:41:29] 2025-12-01 02:40:31,827 | INFO     | mean y: 2960677.0626666667
[2025-11-30 21:41:29] 2025-12-01 02:40:31,827 | INFO     | intersect: -5282832345.115209
[2025-11-30 21:41:29] 2025-12-01 02:40:31,828 | INFO     | chi2: 9.096670338019361
[2025-11-30 21:41:29] 2025-12-01 02:40:31,828 | INFO     | current chi2=9.096670338019361 (change=8.557486609276847 %)
[2025-11-30 21:41:29] 2025-12-01 02:40:31,828 | INFO     | left removable region: 20
[2025-11-30 21:41:29] 2025-12-01 02:40:31,829 | INFO     | sum of square deviations: 1013341224865.8752
[2025-11-30 21:41:29] 2025-12-01 02:40:31,870 | INFO     | sum of deviations: 3495651547497.4917
[2025-11-30 21:41:29] 2025-12-01 02:40:31,870 | INFO     | mean x: 1764511175.6819408
[2025-11-30 21:41:29] 2025-12-01 02:40:31,870 | INFO     | mean y: 2973059.5518867923
[2025-11-30 21:41:29] 2025-12-01 02:40:31,870 | INFO     | intersect: -6083936335.322085
[2025-11-30 21:41:29] 2025-12-01 02:40:31,871 | INFO     | chi2: 5.321655557664971
[2025-11-30 21:41:29] 2025-12-01 02:40:31,872 | INFO     | current memory leak: 3.45 B/s (using 1484 data points, chi2=5.32)
[2025-11-30 21:41:29] 2025-12-01 02:40:31,873 | INFO     | could have reported an average CPU frequency of 3164 MHz (54 samples)
[2025-11-30 21:41:29] 2025-12-01 02:40:31,873 | INFO     | ..............................
[2025-11-30 21:41:29] 2025-12-01 02:40:31,873 | INFO     | . Timing measurements:
[2025-11-30 21:41:29] 2025-12-01 02:40:31,873 | INFO     | . get job = 0 s
[2025-11-30 21:41:29] 2025-12-01 02:40:31,873 | INFO     | . initial setup = 5 s
[2025-11-30 21:41:29] 2025-12-01 02:40:31,873 | INFO     | . payload setup = 13 s
[2025-11-30 21:41:29] 2025-12-01 02:40:31,873 | INFO     | . stage-in = 0 s
[2025-11-30 21:41:29] 2025-12-01 02:40:31,873 | INFO     | . payload execution = 92108 s
[2025-11-30 21:41:29] 2025-12-01 02:40:31,873 | INFO     | . stage-out = 3 s
[2025-11-30 21:41:29] 2025-12-01 02:40:31,873 | INFO     | . log creation = 0 s
[2025-11-30 21:41:29] 2025-12-01 02:40:31,873 | INFO     | ..............................
[2025-11-30 21:41:29] 2025-12-01 02:40:32,188 | INFO     | 
[2025-11-30 21:41:29] 2025-12-01 02:40:32,188 | INFO     | job summary report
[2025-11-30 21:41:29] 2025-12-01 02:40:32,188 | INFO     | --------------------------------------------------
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | PanDA job id: 6898378242
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | task id: 47556161
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | errors: (none)
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | pilot state: finished 
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | transexitcode: 0
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | exeerrorcode: 0
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | exeerrordiag: 
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | exitcode: 0
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | exitmsg: OK
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | cpuconsumptiontime: 208165 s
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | nevents: 1000
[2025-11-30 21:41:29] 2025-12-01 02:40:32,189 | INFO     | neventsw: 0
[2025-11-30 21:41:29] 2025-12-01 02:40:32,192 | INFO     | pid: 1952698
[2025-11-30 21:41:29] 2025-12-01 02:40:32,192 | INFO     | pgrp: 1952698
[2025-11-30 21:41:29] 2025-12-01 02:40:32,192 | INFO     | corecount: 8
[2025-11-30 21:41:29] 2025-12-01 02:40:32,192 | INFO     | event service: False
[2025-11-30 21:41:29] 2025-12-01 02:40:32,192 | INFO     | sizes: {0: 2284145, 1: 2284344, 10: 2284606, 12: 2284634, 92122: 2352291, 92123: 2352290, 92126: 2361468, 92128: 2361524, 92136: 2361770}
[2025-11-30 21:41:29] 2025-12-01 02:40:32,192 | INFO     | --------------------------------------------------
[2025-11-30 21:41:29] 2025-12-01 02:40:32,192 | INFO     | 
[2025-11-30 21:41:29] 2025-12-01 02:40:32,192 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-30 21:41:29] 2025-12-01 02:40:32,214 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,214 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,214 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,214 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,214 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,214 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 21:41:29] 2025-12-01 02:40:32,215 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,216 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 21:41:29] 2025-12-01 02:40:32,216 | INFO     | job 6898378242 has completed (purged errors)
[2025-11-30 21:41:29] 2025-12-01 02:40:32,216 | INFO     | overall cleanup function is called
[2025-11-30 21:41:29] 2025-12-01 02:40:33,233 | INFO     | --- collectZombieJob: --- 10, [1952698]
[2025-11-30 21:41:29] 2025-12-01 02:40:33,233 | INFO     | zombie collector waiting for pid 1952698
[2025-11-30 21:41:29] 2025-12-01 02:40:33,233 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 21:41:29] 2025-12-01 02:40:33,236 | INFO     | collected zombie processes
[2025-11-30 21:41:29] 2025-12-01 02:40:33,237 | INFO     | will attempt to kill all subprocesses of pid=1952698
[2025-11-30 21:41:29] 2025-12-01 02:40:33,774 | INFO     | process IDs to be killed: [1952698] (in reverse order)
[2025-11-30 21:41:29] 2025-12-01 02:40:34,028 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 21:41:29] 2025-12-01 02:40:34,028 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 21:41:29] 2025-12-01 02:40:34,078 | INFO     | did not find any defunct processes belonging to 1952698
[2025-11-30 21:41:29] 2025-12-01 02:40:34,104 | INFO     | did not find any defunct processes belonging to 1952698
[2025-11-30 21:41:29] 2025-12-01 02:40:34,105 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 21:41:29] 2025-12-01 02:40:34,105 | INFO     | ready for new job
[2025-11-30 21:41:29] 2025-12-01 02:40:34,106 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 21:41:29] 2025-12-01 02:40:34,111 | INFO     | ***************************************
[2025-11-30 21:41:29] 2025-12-01 02:40:34,111 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 21:41:29] 2025-12-01 02:40:34,111 | INFO     | ***************************************
[2025-11-30 21:41:29] 2025-12-01 02:40:34,111 | INFO     | 
[2025-11-30 21:41:29] 2025-12-01 02:40:34,116 | INFO     | architecture information:
[2025-11-30 21:41:29] 2025-12-01 02:40:34,117 | INFO     | executing command: cat /etc/os-release
[2025-11-30 21:41:29] 2025-12-01 02:40:34,140 | INFO     | cat /etc/os-release:
[2025-11-30 21:41:29] NAME="CentOS Linux"
[2025-11-30 21:41:29] VERSION="7 (Core)"
[2025-11-30 21:41:29] ID="centos"
[2025-11-30 21:41:29] ID_LIKE="rhel fedora"
[2025-11-30 21:41:29] VERSION_ID="7"
[2025-11-30 21:41:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 21:41:29] ANSI_COLOR="0;31"
[2025-11-30 21:41:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 21:41:29] HOME_URL="https://www.centos.org/"
[2025-11-30 21:41:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 21:41:29] 
[2025-11-30 21:41:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 21:41:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 21:41:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 21:41:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 21:41:29] 
[2025-11-30 21:41:29] 2025-12-01 02:40:34,140 | INFO     | ***************************************
[2025-11-30 21:41:29] 2025-12-01 02:40:34,645 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-30 21:41:29] 2025-12-01 02:40:34,664 | INFO     | sufficient remaining disk space (123504427008 B)
[2025-11-30 21:41:29] 2025-12-01 02:40:34,664 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 21:41:29] 2025-12-01 02:40:34,665 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 21:41:29] 2025-12-01 02:40:34,665 | INFO     | update_server=False
[2025-11-30 21:41:29] 2025-12-01 02:40:34,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 21:41:29] 2025-12-01 02:40:34,665 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 21:41:29] 2025-12-01 02:40:34,665 | INFO     | aborting loop
[2025-11-30 21:41:29] 2025-12-01 02:40:34,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 21:41:29] 2025-12-01 02:40:35,211 | INFO     | all payload control threads have been joined
[2025-11-30 21:41:29] 2025-12-01 02:40:35,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 21:41:29] 2025-12-01 02:40:35,573 | INFO     | all data control threads have been joined
[2025-11-30 21:41:29] 2025-12-01 02:40:35,670 | INFO     | [job] retrieve thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:35,670 | INFO     | [job] job monitor thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:35,910 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:35,932 | INFO     | [payload] validate_post thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:36,087 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:36,138 | INFO     | all job control threads have been joined
[2025-11-30 21:41:29] 2025-12-01 02:40:36,139 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:36,222 | INFO     | [payload] control thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:36,375 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:36,579 | INFO     | [data] control thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:36,987 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 21:41:29] 2025-12-01 02:40:37,131 | INFO     | [payload] failed_post thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:37,144 | INFO     | [job] control thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:37,145 | INFO     | [job] validate thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:37,150 | INFO     | [data] copytool_in thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:37,330 | INFO     | [data] copytool_out thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:37,993 | INFO     | [job] queue monitor thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:40:38,739 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 21:41:29] 2025-12-01 02:41:04,024 | INFO     | PID=1946078 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 21:41:29] 2025-12-01 02:41:04,024 | INFO     | .. there are 44 such processes running
[2025-11-30 21:41:29] 2025-12-01 02:41:04,025 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 21:41:29] 2025-12-01 02:41:04,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 21:41:29] 2025-12-01 02:41:04,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 21:41:29] 2025-12-01 02:41:23,021 | INFO     | [monitor] cgroup control has ended
[2025-11-30 21:41:29] 2025-12-01 02:41:23,582 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139777103972160)>', '<ExcThread(monitor, started 139776464242432)>']
[2025-11-30 21:41:29] 2025-12-01 02:41:24,153 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 21:41:29] 2025-12-01 02:41:24,153 | INFO     | [monitor] control thread has ended
[2025-11-30 21:41:29] 2025-12-01 02:41:28,608 | INFO     | all workflow threads have been joined
[2025-11-30 21:41:29] 2025-12-01 02:41:28,608 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 21:41:29] 2025-12-01 02:41:28,609 | INFO     | traces error code: 0
[2025-11-30 21:41:29] 2025-12-01 02:41:28,609 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 21:41:29] 2025-12-01 02:41:28,794 [wrapper] ==== pilot stdout END ====
[2025-11-30 21:41:29] 2025-12-01 02:41:28,807 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 21:41:29] 2025-12-01 02:41:28,812 [wrapper] pilotpid: 1946078
[2025-11-30 21:41:29] 2025-12-01 02:41:28,820 [wrapper] Pilot exit status: 0
[2025-11-30 21:41:29] 2025-12-01 02:41:28,853 [wrapper] pandaids: 6898378242
[2025-11-30 21:41:29] 2025-12-01 02:41:29,024 [wrapper] cleanup supervisor_pilot 3935055 1946079
[2025-11-30 21:41:29] 2025-12-01 02:41:29,027 [wrapper] Test setup, not cleaning
[2025-11-30 21:41:29] 2025-12-01 02:41:29,030 [wrapper] apfmon messages muted
[2025-11-30 21:41:29] 2025-12-01 02:41:29,033 [wrapper] ==== wrapper stdout END ====
[2025-11-30 21:41:29] 2025-12-01 02:41:29,035 [wrapper] ==== wrapper stderr END ====
[2025-11-30 21:41:29]  *** Error codes and diagnostics ***
[2025-11-30 21:41:29]     "exeErrorCode": 0,
[2025-11-30 21:41:29]     "exeErrorDiag": "",
[2025-11-30 21:41:29]     "pilotErrorCode": 0,
[2025-11-30 21:41:29]     "pilotErrorDiag": "",
[2025-11-30 21:41:29]  *** Listing of results directory ***
[2025-11-30 21:41:29] total 1345672
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-30 21:41:29] -rwx------. 1 boincer umatlas     36292 Nov 26 11:38 runpilot2-wrapper.sh
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:41 queuedata.json
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas       100 Nov 29 20:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 21:41:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 20:04 run_atlas
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas       105 Nov 29 20:04 job.xml
[2025-11-30 21:41:29] -rw-r--r--. 2 boincer umatlas 411752787 Nov 29 20:04 EVNT.47483658._002598.pool.root.1
[2025-11-30 21:41:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 20:04 start_atlas.sh
[2025-11-30 21:41:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 20:04 shared
[2025-11-30 21:41:29] -rw-r--r--. 2 boincer umatlas    590111 Nov 29 20:04 input.tar.gz
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas         0 Nov 29 20:04 boinc_lockfile
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas      2787 Nov 29 20:04 pandaJob.out
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas        57 Nov 29 20:04 setup.sh.local
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas    991844 Nov 29 20:04 agis_schedconf.cvmfs.json
[2025-11-30 21:41:29] drwx------. 5 boincer umatlas      4096 Nov 29 20:04 pilot3
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas       533 Nov 30 21:06 boinc_task_state.xml
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas      6949 Nov 30 21:36 init_data.xml
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas 935196201 Nov 30 21:39 HITS.47556161._005805.pool.root.1
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas      1073 Nov 30 21:40 memory_monitor_summary.json
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas   1516240 Nov 30 21:40 agis_ddmendpoints.agis.ALL.json
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas   2458793 Nov 30 21:40 log.47556161._005805.job.log.tgz.1
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas      8629 Nov 30 21:40 heartbeat.json
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas        95 Nov 30 21:41 pilot_heartbeat.json
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 30 21:41 boinc_mmap_file
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas        29 Nov 30 21:41 wrapper_checkpoint.txt
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas      4825 Nov 30 21:41 pilotlog.txt
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas  11084426 Nov 30 21:41 log.47556161._005805.job.log.1
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas       353 Nov 30 21:41 output.list
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas       620 Nov 30 21:41 runtime_log
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas  13568000 Nov 30 21:41 result.tar.gz
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas      9343 Nov 30 21:41 runtime_log.err
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas       666 Nov 30 21:41 EYRLDmliXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCAKKDm2OQzRm.diag
[2025-11-30 21:41:29] -rw-r--r--. 1 boincer umatlas     21675 Nov 30 21:41 stderr.txt
[2025-11-30 21:41:29] HITS file was successfully produced:
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas 935196201 Nov 30 21:39 shared/HITS.pool.root.1
[2025-11-30 21:41:29]  *** Contents of shared directory: ***
[2025-11-30 21:41:29] total 1329240
[2025-11-30 21:41:29] -rw-r--r--. 2 boincer umatlas 411752787 Nov 29 20:04 ATLAS.root_0
[2025-11-30 21:41:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 20:04 start_atlas.sh
[2025-11-30 21:41:29] -rw-r--r--. 2 boincer umatlas    590111 Nov 29 20:04 input.tar.gz
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas 935196201 Nov 30 21:39 HITS.pool.root.1
[2025-11-30 21:41:29] -rw-------. 1 boincer umatlas  13568000 Nov 30 21:41 result.tar.gz
21:41:30 (1941300): run_atlas exited; CPU time 209678.219176
21:41:30 (1941300): called boinc_finish(0)

</stderr_txt>
]]>

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