Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:03:08 (2693537): wrapper (7.7.26015): starting
10:03:08 (2693537): wrapper: running run_atlas (--nthreads 3)
[2025-12-03 10:03:08] Arguments: --nthreads 3
[2025-12-03 10:03:08] Threads: 3
[2025-12-03 10:03:08] Checking for CVMFS
[2025-12-03 10:03:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 10:03:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 10:03:08] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 10:03:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 10:03:08] 2.9.2.0 2501968 1443 65180 153586 2 81 35421558 36864000 0 130560 0 535013 99.984 41162 9229 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-03 10:03:08] CVMFS is ok
[2025-12-03 10:03:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 10:03:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 10:03:08] Further information can be found at the LHC@home message board.
[2025-12-03 10:03:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 10:03:08] Checking for apptainer binary...
[2025-12-03 10:03:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 10:03:08] Running /usr/bin/apptainer --version
[2025-12-03 10:03:08] apptainer version 1.4.1-1.1
[2025-12-03 10:03:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 10:03:08] thA385
[2025-12-03 10:03:08] apptainer works
[2025-12-03 10:03:08] Set ATHENA_PROC_NUMBER=3
[2025-12-03 10:03:08] Set ATHENA_CORE_NUMBER=3
[2025-12-03 10:03:08] Starting ATLAS job with PandaID=6894239357
[2025-12-03 10:03:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 18:06:54]  *** The last 200 lines of the pilot log: ***
[2025-12-03 18:06:54] 2025-12-03 17:06:19,139 | INFO     | zombie collector waiting for pid 2703703
[2025-12-03 18:06:54] 2025-12-03 17:06:19,139 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 18:06:54] 2025-12-03 17:06:19,139 | INFO     | collected zombie processes
[2025-12-03 18:06:54] 2025-12-03 17:06:19,139 | INFO     | will attempt to kill all subprocesses of pid=2703703
[2025-12-03 18:06:54] 2025-12-03 17:06:19,180 | INFO     | process IDs to be killed: [2703703] (in reverse order)
[2025-12-03 18:06:54] 2025-12-03 17:06:19,205 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 18:06:54] 2025-12-03 17:06:19,206 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 18:06:54] 2025-12-03 17:06:19,207 | INFO     | did not find any defunct processes belonging to 2703703
[2025-12-03 18:06:54] 2025-12-03 17:06:19,208 | INFO     | did not find any defunct processes belonging to 2703703
[2025-12-03 18:06:54] 2025-12-03 17:06:19,209 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 18:06:54] 2025-12-03 17:06:19,209 | INFO     | ready for new job
[2025-12-03 18:06:54] 2025-12-03 17:06:19,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 18:06:54] 2025-12-03 17:06:19,210 | INFO     | ***************************************
[2025-12-03 18:06:54] 2025-12-03 17:06:19,210 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 18:06:54] 2025-12-03 17:06:19,210 | INFO     | ***************************************
[2025-12-03 18:06:54] 2025-12-03 17:06:19,210 | INFO     | 
[2025-12-03 18:06:54] 2025-12-03 17:06:19,210 | INFO     | architecture information:
[2025-12-03 18:06:54] 2025-12-03 17:06:19,211 | INFO     | executing command: cat /etc/os-release
[2025-12-03 18:06:54] 2025-12-03 17:06:19,220 | INFO     | cat /etc/os-release:
[2025-12-03 18:06:54] NAME="CentOS Linux"
[2025-12-03 18:06:54] VERSION="7 (Core)"
[2025-12-03 18:06:54] ID="centos"
[2025-12-03 18:06:54] ID_LIKE="rhel fedora"
[2025-12-03 18:06:54] VERSION_ID="7"
[2025-12-03 18:06:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 18:06:54] ANSI_COLOR="0;31"
[2025-12-03 18:06:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 18:06:54] HOME_URL="https://www.centos.org/"
[2025-12-03 18:06:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 18:06:54] 
[2025-12-03 18:06:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 18:06:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 18:06:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 18:06:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 18:06:54] 
[2025-12-03 18:06:54] 2025-12-03 17:06:19,220 | INFO     | ***************************************
[2025-12-03 18:06:54] 2025-12-03 17:06:19,721 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-03 18:06:54] 2025-12-03 17:06:19,733 | INFO     | sufficient remaining disk space (366932393984 B)
[2025-12-03 18:06:54] 2025-12-03 17:06:19,733 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 18:06:54] 2025-12-03 17:06:19,733 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 18:06:54] 2025-12-03 17:06:19,733 | INFO     | update_server=False
[2025-12-03 18:06:54] 2025-12-03 17:06:19,733 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 18:06:54] 2025-12-03 17:06:19,733 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 18:06:54] 2025-12-03 17:06:19,969 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 18:06:54] 2025-12-03 17:06:19,969 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 18:06:54] 2025-12-03 17:06:19,969 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 18:06:54] 2025-12-03 17:06:19,969 | INFO     | will abort loop
[2025-12-03 18:06:54] 2025-12-03 17:06:20,663 | INFO     | all data control threads have been joined
[2025-12-03 18:06:54] 2025-12-03 17:06:20,726 | INFO     | all payload control threads have been joined
[2025-12-03 18:06:54] 2025-12-03 17:06:20,726 | INFO     | all job control threads have been joined
[2025-12-03 18:06:54] 2025-12-03 17:06:20,738 | INFO     | [job] retrieve thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:20,739 | INFO     | [job] queue monitor thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:20,878 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:20,965 | INFO     | [job] validate thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:20,975 | INFO     | [job] job monitor thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:21,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 18:06:54] 2025-12-03 17:06:21,401 | INFO     | [payload] failed_post thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:21,588 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:21,608 | INFO     | [payload] validate_post thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:21,668 | INFO     | [data] control thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:21,732 | INFO     | [payload] control thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:21,732 | INFO     | [job] control thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:21,779 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:21,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:22,040 | INFO     | [data] copytool_in thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:22,740 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 18:06:54] 2025-12-03 17:06:23,235 | INFO     | [data] copytool_out thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:26,747 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 18:06:54] 2025-12-03 17:06:48,747 | INFO     | [monitor] cgroup control has ended
[2025-12-03 18:06:54] 2025-12-03 17:06:48,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140379155052352)>', '<ExcThread(monitor, started 140378355250944)>']
[2025-12-03 18:06:54] 2025-12-03 17:06:50,414 | INFO     | PID=2697253 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 18:06:54] 2025-12-03 17:06:50,414 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 18:06:54] 2025-12-03 17:06:50,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 18:06:54] 2025-12-03 17:06:50,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 18:06:54] 2025-12-03 17:06:50,414 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 18:06:54] 2025-12-03 17:06:50,414 | INFO     | [monitor] control thread has ended
[2025-12-03 18:06:54] 2025-12-03 17:06:53,975 | INFO     | all workflow threads have been joined
[2025-12-03 18:06:54] 2025-12-03 17:06:53,975 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 18:06:54] 2025-12-03 17:06:53,976 | INFO     | traces error code: 0
[2025-12-03 18:06:54] 2025-12-03 17:06:53,976 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 18:06:54] 2025-12-03 17:06:54,024 [wrapper] ==== pilot stdout END ====
[2025-12-03 18:06:54] 2025-12-03 17:06:54,027 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 18:06:54] 2025-12-03 17:06:54,030 [wrapper] pilotpid: 2697253
[2025-12-03 18:06:54] 2025-12-03 17:06:54,032 [wrapper] Pilot exit status: 0
[2025-12-03 18:06:54] 2025-12-03 17:06:54,040 [wrapper] pandaids: 6894239357
[2025-12-03 18:06:54] 2025-12-03 17:06:54,057 [wrapper] cleanup supervisor_pilot 2754951 2697254
[2025-12-03 18:06:54] 2025-12-03 17:06:54,060 [wrapper] Test setup, not cleaning
[2025-12-03 18:06:54] 2025-12-03 17:06:54,062 [wrapper] apfmon messages muted
[2025-12-03 18:06:54] 2025-12-03 17:06:54,065 [wrapper] ==== wrapper stdout END ====
[2025-12-03 18:06:54] 2025-12-03 17:06:54,067 [wrapper] ==== wrapper stderr END ====
[2025-12-03 18:06:54]  *** Error codes and diagnostics ***
[2025-12-03 18:06:54]     "exeErrorCode": 0,
[2025-12-03 18:06:54]     "exeErrorDiag": "",
[2025-12-03 18:06:54]     "pilotErrorCode": 0,
[2025-12-03 18:06:54]     "pilotErrorDiag": "",
[2025-12-03 18:06:54]  *** Listing of results directory ***
[2025-12-03 18:06:54] total 1323004
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc    576529 Nov 27 02:09 pilot3.tar.gz
[2025-12-03 18:06:54] -rwx------ 1 boinc boinc     36292 Nov 27 02:28 runpilot2-wrapper.sh
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc      5112 Nov 27 02:30 queuedata.json
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc       100 Dec  3 10:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 18:06:54] -rwxr-xr-x 1 boinc boinc      7986 Dec  3 10:03 run_atlas
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc       105 Dec  3 10:03 job.xml
[2025-12-03 18:06:54] -rw-r--r-- 2 boinc boinc 411568957 Dec  3 10:03 EVNT.47493127._001011.pool.root.1
[2025-12-03 18:06:54] drwxrwx--x 2 boinc boinc      4096 Dec  3 10:03 shared
[2025-12-03 18:06:54] -rw-r--r-- 2 boinc boinc    590108 Dec  3 10:03 input.tar.gz
[2025-12-03 18:06:54] -rw-r--r-- 2 boinc boinc     15847 Dec  3 10:03 start_atlas.sh
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc         0 Dec  3 10:03 boinc_setup_complete
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc      6447 Dec  3 10:03 init_data.xml
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc         0 Dec  3 10:03 boinc_lockfile
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc      2787 Dec  3 10:03 pandaJob.out
[2025-12-03 18:06:54] -rw------- 1 boinc boinc    985766 Dec  3 10:03 agis_schedconf.cvmfs.json
[2025-12-03 18:06:54] drwx------ 5 boinc boinc      4096 Dec  3 10:03 pilot3
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc       531 Dec  3 18:02 boinc_task_state.xml
[2025-12-03 18:06:54] -rw------- 1 boinc boinc 928783657 Dec  3 18:05 HITS.47533962._000106.pool.root.1
[2025-12-03 18:06:54] -rw------- 1 boinc boinc      1024 Dec  3 18:06 memory_monitor_summary.json
[2025-12-03 18:06:54] -rw------- 1 boinc boinc   1516240 Dec  3 18:06 agis_ddmendpoints.agis.ALL.json
[2025-12-03 18:06:54] -rw------- 1 boinc boinc   1172075 Dec  3 18:06 log.47533962._000106.job.log.tgz.1
[2025-12-03 18:06:54] -rw------- 1 boinc boinc      8566 Dec  3 18:06 heartbeat.json
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc      8192 Dec  3 18:06 boinc_mmap_file
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc        28 Dec  3 18:06 wrapper_checkpoint.txt
[2025-12-03 18:06:54] -rw------- 1 boinc boinc        95 Dec  3 18:06 pilot_heartbeat.json
[2025-12-03 18:06:54] -rw------- 1 boinc boinc      4938 Dec  3 18:06 pilotlog.txt
[2025-12-03 18:06:54] -rw------- 1 boinc boinc   4079960 Dec  3 18:06 log.47533962._000106.job.log.1
[2025-12-03 18:06:54] -rw------- 1 boinc boinc       353 Dec  3 18:06 output.list
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc       620 Dec  3 18:06 runtime_log
[2025-12-03 18:06:54] -rw------- 1 boinc boinc   5273600 Dec  3 18:06 result.tar.gz
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc      8898 Dec  3 18:06 runtime_log.err
[2025-12-03 18:06:54] -rw------- 1 boinc boinc       665 Dec  3 18:06 7cQKDmczfi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDSKKDm0yr2Um.diag
[2025-12-03 18:06:54] -rw-r--r-- 1 boinc boinc     10966 Dec  3 18:06 stderr.txt
[2025-12-03 18:06:54] HITS file was successfully produced:
[2025-12-03 18:06:54] -rw------- 1 boinc boinc 928783657 Dec  3 18:05 shared/HITS.pool.root.1
[2025-12-03 18:06:54]  *** Contents of shared directory: ***
[2025-12-03 18:06:54] total 1314692
[2025-12-03 18:06:54] -rw-r--r-- 2 boinc boinc 411568957 Dec  3 10:03 ATLAS.root_0
[2025-12-03 18:06:54] -rw-r--r-- 2 boinc boinc    590108 Dec  3 10:03 input.tar.gz
[2025-12-03 18:06:54] -rw-r--r-- 2 boinc boinc     15847 Dec  3 10:03 start_atlas.sh
[2025-12-03 18:06:54] -rw------- 1 boinc boinc 928783657 Dec  3 18:05 HITS.pool.root.1
[2025-12-03 18:06:54] -rw------- 1 boinc boinc   5273600 Dec  3 18:06 result.tar.gz
18:06:55 (2693537): run_atlas exited; CPU time 85470.770568
18:06:55 (2693537): called boinc_finish(0)

</stderr_txt>
]]>

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