Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:21:17 (31145): wrapper (7.7.26015): starting
15:21:17 (31145): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 15:21:17] Arguments: --nthreads 8
[2025-12-01 15:21:17] Threads: 8
[2025-12-01 15:21:17] Checking for CVMFS
[2025-12-01 15:21:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 15:21:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 15:21:18] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 15:21:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 15:21:20] 2.11.2.0 4250 90190 90724 153520 1 84 15812874 25165825 2554 130560 19 25560296 99.884 15711063 1664 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 15:21:20] CVMFS is ok
[2025-12-01 15:21:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 15:21:20] Checking for apptainer binary...
[2025-12-01 15:21:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 15:21:20] Running /usr/bin/apptainer --version
[2025-12-01 15:21:20] apptainer version 1.3.2-1.el7
[2025-12-01 15:21:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 15:21:26] cg-vwn215.simple-grid.lan
[2025-12-01 15:21:26] apptainer works
[2025-12-01 15:21:26] Set ATHENA_PROC_NUMBER=8
[2025-12-01 15:21:26] Set ATHENA_CORE_NUMBER=8
[2025-12-01 15:21:26] Starting ATLAS job with PandaID=6899449039
[2025-12-01 15:21:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 15:31:36]  *** The last 200 lines of the pilot log: ***
[2025-12-02 15:31:36] 2025-12-02 14:30:26,740 | INFO     | monitor loop #5817: job 0:6899449039 is in state 'finished'
[2025-12-02 15:31:36] 2025-12-02 14:30:26,740 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:31:36] 2025-12-02 14:30:27,529 | INFO     | time since job start (86733s) is within the limit (172800.0s)
[2025-12-02 15:31:36] 2025-12-02 14:30:29,246 | INFO     | monitor loop #5818: job 0:6899449039 is in state 'finished'
[2025-12-02 15:31:36] 2025-12-02 14:30:29,246 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:31:36] 2025-12-02 14:30:29,536 | INFO     | time since job start (86735s) is within the limit (172800.0s)
[2025-12-02 15:31:36] 2025-12-02 14:30:31,543 | INFO     | time since job start (86737s) is within the limit (172800.0s)
[2025-12-02 15:31:36] 2025-12-02 14:30:31,754 | INFO     | monitor loop #5819: job 0:6899449039 is in state 'finished'
[2025-12-02 15:31:36] 2025-12-02 14:30:31,754 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:31:36] 2025-12-02 14:30:32,270 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 15:31:36] 2025-12-02 14:30:32,272 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-02 15:31:36] 2025-12-02 14:30:32,273 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6899449039/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 15:31:36] 2025-12-02 14:30:32,274 | INFO     | extracted standard info from prmon json
[2025-12-02 15:31:36] 2025-12-02 14:30:32,274 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 15:31:36] 2025-12-02 14:30:32,274 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 15:31:36] 2025-12-02 14:30:32,299 | INFO     | fitting pss+swap vs Time
[2025-12-02 15:31:36] 2025-12-02 14:30:32,301 | INFO     | sum of square deviations: 874791001978.0347
[2025-12-02 15:31:36] 2025-12-02 14:30:32,384 | INFO     | sum of deviations: 3422354395143.012
[2025-12-02 15:31:36] 2025-12-02 14:30:32,384 | INFO     | mean x: 1764642658.0920029
[2025-12-02 15:31:36] 2025-12-02 14:30:32,384 | INFO     | mean y: 2859741.6999292285
[2025-12-02 15:31:36] 2025-12-02 14:30:32,384 | INFO     | intersect: -6900769288.688354
[2025-12-02 15:31:36] 2025-12-02 14:30:32,386 | INFO     | chi2: 17.37826641697607
[2025-12-02 15:31:36] 2025-12-02 14:30:32,388 | INFO     | sum of square deviations: 865537754897.0564
[2025-12-02 15:31:36] 2025-12-02 14:30:32,455 | INFO     | sum of deviations: 3894083125890.132
[2025-12-02 15:31:36] 2025-12-02 14:30:32,456 | INFO     | mean x: 1764642505.5958807
[2025-12-02 15:31:36] 2025-12-02 14:30:32,456 | INFO     | mean y: 2867514.610085227
[2025-12-02 15:31:36] 2025-12-02 14:30:32,456 | INFO     | intersect: -7936317766.899316
[2025-12-02 15:31:36] 2025-12-02 14:30:32,457 | INFO     | chi2: 14.199272561395064
[2025-12-02 15:31:36] 2025-12-02 14:30:32,458 | INFO     | current chi2=14.199272561395064 (change=18.292928530981587 %)
[2025-12-02 15:31:36] 2025-12-02 14:30:32,458 | INFO     | right removable region: 1407
[2025-12-02 15:31:36] 2025-12-02 14:30:32,460 | INFO     | sum of square deviations: 865536813667.0554
[2025-12-02 15:31:36] 2025-12-02 14:30:32,525 | INFO     | sum of deviations: 2828377643354.2637
[2025-12-02 15:31:36] 2025-12-02 14:30:32,526 | INFO     | mean x: 1764642810.5958807
[2025-12-02 15:31:36] 2025-12-02 14:30:32,526 | INFO     | mean y: 2869529.2869318184
[2025-12-02 15:31:36] 2025-12-02 14:30:32,526 | INFO     | intersect: -5763582220.86951
[2025-12-02 15:31:36] 2025-12-02 14:30:32,528 | INFO     | chi2: 12.728421312863654
[2025-12-02 15:31:36] 2025-12-02 14:30:32,528 | INFO     | current chi2=12.728421312863654 (change=26.756668315144406 %)
[2025-12-02 15:31:36] 2025-12-02 14:30:32,530 | INFO     | sum of square deviations: 856348114956.0298
[2025-12-02 15:31:36] 2025-12-02 14:30:32,608 | INFO     | sum of deviations: 2367794163889.384
[2025-12-02 15:31:36] 2025-12-02 14:30:32,608 | INFO     | mean x: 1764642963.0997863
[2025-12-02 15:31:36] 2025-12-02 14:30:32,608 | INFO     | mean y: 2877173.2900926587
[2025-12-02 15:31:36] 2025-12-02 14:30:32,609 | INFO     | intersect: -4876343363.781661
[2025-12-02 15:31:36] 2025-12-02 14:30:32,610 | INFO     | chi2: 10.064942509729118
[2025-12-02 15:31:36] 2025-12-02 14:30:32,610 | INFO     | current chi2=10.064942509729118 (change=20.92544501526485 %)
[2025-12-02 15:31:36] 2025-12-02 14:30:32,611 | INFO     | left removable region: 20
[2025-12-02 15:31:36] 2025-12-02 14:30:32,613 | INFO     | sum of square deviations: 827383470550.2083
[2025-12-02 15:31:36] 2025-12-02 14:30:32,667 | INFO     | sum of deviations: 2686926550536.376
[2025-12-02 15:31:36] 2025-12-02 14:30:32,667 | INFO     | mean x: 1764643085.1067052
[2025-12-02 15:31:36] 2025-12-02 14:30:32,667 | INFO     | mean y: 2891557.443403028
[2025-12-02 15:31:36] 2025-12-02 14:30:32,667 | INFO     | intersect: -5727784152.62434
[2025-12-02 15:31:36] 2025-12-02 14:30:32,669 | INFO     | chi2: 5.385540869007144
[2025-12-02 15:31:36] 2025-12-02 14:30:32,669 | INFO     | current memory leak: 3.25 B/s (using 1387 data points, chi2=5.39)
[2025-12-02 15:31:36] 2025-12-02 14:30:32,671 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-12-02 15:31:36] 2025-12-02 14:30:32,671 | INFO     | ..............................
[2025-12-02 15:31:36] 2025-12-02 14:30:32,671 | INFO     | . Timing measurements:
[2025-12-02 15:31:36] 2025-12-02 14:30:32,671 | INFO     | . get job = 0 s
[2025-12-02 15:31:36] 2025-12-02 14:30:32,671 | INFO     | . initial setup = 6 s
[2025-12-02 15:31:36] 2025-12-02 14:30:32,671 | INFO     | . payload setup = 155 s
[2025-12-02 15:31:36] 2025-12-02 14:30:32,671 | INFO     | . stage-in = 0 s
[2025-12-02 15:31:36] 2025-12-02 14:30:32,671 | INFO     | . payload execution = 86299 s
[2025-12-02 15:31:36] 2025-12-02 14:30:32,672 | INFO     | . stage-out = 5 s
[2025-12-02 15:31:36] 2025-12-02 14:30:32,672 | INFO     | . log creation = 2 s
[2025-12-02 15:31:36] 2025-12-02 14:30:32,672 | INFO     | ..............................
[2025-12-02 15:31:36] 2025-12-02 14:30:32,792 | INFO     | 
[2025-12-02 15:31:36] 2025-12-02 14:30:32,792 | INFO     | job summary report
[2025-12-02 15:31:36] 2025-12-02 14:30:32,792 | INFO     | --------------------------------------------------
[2025-12-02 15:31:36] 2025-12-02 14:30:32,792 | INFO     | PanDA job id: 6899449039
[2025-12-02 15:31:36] 2025-12-02 14:30:32,792 | INFO     | task id: 47556173
[2025-12-02 15:31:36] 2025-12-02 14:30:32,792 | INFO     | errors: (none)
[2025-12-02 15:31:36] 2025-12-02 14:30:32,792 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 15:31:36] 2025-12-02 14:30:32,793 | INFO     | pilot state: finished 
[2025-12-02 15:31:36] 2025-12-02 14:30:32,793 | INFO     | transexitcode: 0
[2025-12-02 15:31:36] 2025-12-02 14:30:32,793 | INFO     | exeerrorcode: 0
[2025-12-02 15:31:36] 2025-12-02 14:30:32,793 | INFO     | exeerrordiag: 
[2025-12-02 15:31:36] 2025-12-02 14:30:32,793 | INFO     | exitcode: 0
[2025-12-02 15:31:36] 2025-12-02 14:30:32,793 | INFO     | exitmsg: OK
[2025-12-02 15:31:36] 2025-12-02 14:30:32,793 | INFO     | cpuconsumptiontime: 327327 s
[2025-12-02 15:31:36] 2025-12-02 14:30:32,793 | INFO     | nevents: 1000
[2025-12-02 15:31:36] 2025-12-02 14:30:32,793 | INFO     | neventsw: 0
[2025-12-02 15:31:36] 2025-12-02 14:30:32,793 | INFO     | pid: 9142
[2025-12-02 15:31:36] 2025-12-02 14:30:32,793 | INFO     | pgrp: 9142
[2025-12-02 15:31:36] 2025-12-02 14:30:32,793 | INFO     | corecount: 8
[2025-12-02 15:31:36] 2025-12-02 14:30:32,794 | INFO     | event service: False
[2025-12-02 15:31:36] 2025-12-02 14:30:32,794 | INFO     | sizes: {0: 2283488, 1: 2284174, 2: 2284373, 13: 2284373, 23: 2284429, 34: 2284457, 45: 2284613, 56: 2284641, 66: 2284669, 77: 2284697, 88: 2284753, 97: 2285323, 99
[2025-12-02 15:31:36] 2025-12-02 14:30:32,794 | INFO     | --------------------------------------------------
[2025-12-02 15:31:36] 2025-12-02 14:30:32,794 | INFO     | 
[2025-12-02 15:31:36] 2025-12-02 14:30:32,794 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-12-02 15:31:36] 2025-12-02 14:30:32,817 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,818 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,818 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,818 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,818 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,818 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,818 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,818 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,818 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,818 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,818 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,819 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,819 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,819 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,819 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 15:31:36] 2025-12-02 14:30:32,819 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,819 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:30:32,820 | INFO     | job 6899449039 has completed (purged errors)
[2025-12-02 15:31:36] 2025-12-02 14:30:32,820 | INFO     | overall cleanup function is called
[2025-12-02 15:31:36] 2025-12-02 14:30:33,845 | INFO     | --- collectZombieJob: --- 10, [9142]
[2025-12-02 15:31:36] 2025-12-02 14:30:33,845 | INFO     | zombie collector waiting for pid 9142
[2025-12-02 15:31:36] 2025-12-02 14:30:33,845 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 15:31:36] 2025-12-02 14:30:33,845 | INFO     | collected zombie processes
[2025-12-02 15:31:36] 2025-12-02 14:30:33,845 | INFO     | will attempt to kill all subprocesses of pid=9142
[2025-12-02 15:31:36] 2025-12-02 14:30:33,960 | INFO     | process IDs to be killed: [9142] (in reverse order)
[2025-12-02 15:31:36] 2025-12-02 14:30:34,520 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 15:31:36] 2025-12-02 14:30:34,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 15:31:36] 2025-12-02 14:30:34,524 | INFO     | did not find any defunct processes belonging to 9142
[2025-12-02 15:31:36] 2025-12-02 14:30:34,526 | INFO     | did not find any defunct processes belonging to 9142
[2025-12-02 15:31:36] 2025-12-02 14:30:34,573 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 15:31:36] 2025-12-02 14:30:34,573 | INFO     | ready for new job
[2025-12-02 15:31:36] 2025-12-02 14:30:34,573 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 15:31:36] 2025-12-02 14:30:34,579 | INFO     | ***************************************
[2025-12-02 15:31:36] 2025-12-02 14:30:34,579 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 15:31:36] 2025-12-02 14:30:34,579 | INFO     | ***************************************
[2025-12-02 15:31:36] 2025-12-02 14:30:34,579 | INFO     | 
[2025-12-02 15:31:36] 2025-12-02 14:30:34,580 | INFO     | pilot is running in a VM
[2025-12-02 15:31:36] 2025-12-02 14:30:34,580 | INFO     | architecture information:
[2025-12-02 15:31:36] 2025-12-02 14:30:34,586 | INFO     | executing command: cat /etc/os-release
[2025-12-02 15:31:36] 2025-12-02 14:30:34,811 | INFO     | cat /etc/os-release:
[2025-12-02 15:31:36] NAME="CentOS Linux"
[2025-12-02 15:31:36] VERSION="7 (Core)"
[2025-12-02 15:31:36] ID="centos"
[2025-12-02 15:31:36] ID_LIKE="rhel fedora"
[2025-12-02 15:31:36] VERSION_ID="7"
[2025-12-02 15:31:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 15:31:36] ANSI_COLOR="0;31"
[2025-12-02 15:31:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 15:31:36] HOME_URL="https://www.centos.org/"
[2025-12-02 15:31:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 15:31:36] 
[2025-12-02 15:31:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 15:31:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 15:31:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 15:31:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 15:31:36] 
[2025-12-02 15:31:36] 2025-12-02 14:30:34,811 | INFO     | ***************************************
[2025-12-02 15:31:36] 2025-12-02 14:30:35,314 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-12-02 15:31:36] 2025-12-02 14:30:35,482 | INFO     | sufficient remaining disk space (487820623872 B)
[2025-12-02 15:31:36] 2025-12-02 14:30:35,483 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 15:31:36] 2025-12-02 14:30:35,483 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 15:31:36] 2025-12-02 14:30:35,483 | INFO     | update_server=False
[2025-12-02 15:31:36] 2025-12-02 14:30:35,483 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 15:31:36] 2025-12-02 14:30:35,485 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:31:36] 2025-12-02 14:30:35,485 | INFO     | aborting loop
[2025-12-02 15:31:36] 2025-12-02 14:30:35,487 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 15:31:36] 2025-12-02 14:30:36,062 | INFO     | all payload control threads have been joined
[2025-12-02 15:31:36] 2025-12-02 14:30:36,489 | INFO     | [job] retrieve thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:36,491 | INFO     | [job] job monitor thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:36,509 | INFO     | [data] copytool_in thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:36,556 | INFO     | [job] validate thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:36,574 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:36,578 | INFO     | all data control threads have been joined
[2025-12-02 15:31:36] 2025-12-02 14:30:36,594 | INFO     | all job control threads have been joined
[2025-12-02 15:31:36] 2025-12-02 14:30:36,739 | INFO     | [payload] validate_post thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:37,067 | INFO     | [payload] control thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:37,445 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:37,465 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:37,494 | INFO     | [data] copytool_out thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:37,584 | INFO     | [data] control thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:37,601 | INFO     | [job] control thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:37,764 | INFO     | [payload] failed_post thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:37,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:31:36] 2025-12-02 14:30:37,870 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:38,812 | INFO     | [job] queue monitor thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:30:38,839 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 15:31:36] 2025-12-02 14:30:42,847 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:04,756 | INFO     | PID=2525 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 15:31:36] 2025-12-02 14:31:04,756 | INFO     | .. there are 9 such processes running
[2025-12-02 15:31:36] 2025-12-02 14:31:04,758 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 15:31:36] 2025-12-02 14:31:04,758 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 15:31:36] 2025-12-02 14:31:04,758 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 15:31:36] 2025-12-02 14:31:26,006 | INFO     | [monitor] cgroup control has ended
[2025-12-02 15:31:36] 2025-12-02 14:31:27,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139922199201600)>', '<ExcThread(monitor, started 139921301956352)>']
[2025-12-02 15:31:36] 2025-12-02 14:31:27,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 15:31:36] 2025-12-02 14:31:27,895 | INFO     | [monitor] control thread has ended
[2025-12-02 15:31:36] 2025-12-02 14:31:32,371 | INFO     | all workflow threads have been joined
[2025-12-02 15:31:36] 2025-12-02 14:31:32,371 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 15:31:36] 2025-12-02 14:31:32,371 | INFO     | traces error code: 0
[2025-12-02 15:31:36] 2025-12-02 14:31:32,371 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 15:31:36] 2025-12-02 14:31:32,781 [wrapper] ==== pilot stdout END ====
[2025-12-02 15:31:36] 2025-12-02 14:31:32,921 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 15:31:36] 2025-12-02 14:31:33,011 [wrapper] pilotpid: 2525
[2025-12-02 15:31:36] 2025-12-02 14:31:33,140 [wrapper] Pilot exit status: 0
[2025-12-02 15:31:36] 2025-12-02 14:31:33,566 [wrapper] pandaids: 6899449039
[2025-12-02 15:31:36] 2025-12-02 14:31:34,235 [wrapper] cleanup supervisor_pilot 18079 2526
[2025-12-02 15:31:36] 2025-12-02 14:31:34,322 [wrapper] Test setup, not cleaning
[2025-12-02 15:31:36] 2025-12-02 14:31:34,413 [wrapper] apfmon messages muted
[2025-12-02 15:31:36] 2025-12-02 14:31:34,517 [wrapper] ==== wrapper stdout END ====
[2025-12-02 15:31:36] 2025-12-02 14:31:34,586 [wrapper] ==== wrapper stderr END ====
[2025-12-02 15:31:36]  *** Error codes and diagnostics ***
[2025-12-02 15:31:36]     "exeErrorCode": 0,
[2025-12-02 15:31:36]     "exeErrorDiag": "",
[2025-12-02 15:31:36]     "pilotErrorCode": 0,
[2025-12-02 15:31:36]     "pilotErrorDiag": "",
[2025-12-02 15:31:36]  *** Listing of results directory ***
[2025-12-02 15:31:36] total 1346720
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc    576529 Nov 27 02:09 pilot3.tar.gz
[2025-12-02 15:31:36] -rwx------. 1 boinc boinc     36292 Nov 27 02:29 runpilot2-wrapper.sh
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc      5112 Nov 27 02:31 queuedata.json
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc       100 Dec  1 15:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 15:31:36] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 15:21 run_atlas
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc       105 Dec  1 15:21 job.xml
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc      6394 Dec  1 15:21 init_data.xml
[2025-12-02 15:31:36] -rw-r--r--. 2 boinc boinc 410794396 Dec  1 15:21 EVNT.47483658._003304.pool.root.1
[2025-12-02 15:31:36] -rw-r--r--. 2 boinc boinc     15847 Dec  1 15:21 start_atlas.sh
[2025-12-02 15:31:36] drwxrwx--x. 2 boinc boinc        68 Dec  1 15:21 shared
[2025-12-02 15:31:36] -rw-r--r--. 2 boinc boinc    590111 Dec  1 15:21 input.tar.gz
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc         0 Dec  1 15:21 boinc_lockfile
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc      2787 Dec  1 15:21 pandaJob.out
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc    992150 Dec  1 15:24 agis_schedconf.cvmfs.json
[2025-12-02 15:31:36] drwx------. 5 boinc boinc      4096 Dec  1 15:24 pilot3
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc       533 Dec  2 15:07 boinc_task_state.xml
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc 936344788 Dec  2 15:27 HITS.47556173._002607.pool.root.1
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc      1027 Dec  2 15:28 memory_monitor_summary.json
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc   1516240 Dec  2 15:29 agis_ddmendpoints.agis.ALL.json
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc   2479841 Dec  2 15:29 log.47556173._002607.job.log.tgz.1
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc      8626 Dec  2 15:30 heartbeat.json
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc        95 Dec  2 15:31 pilot_heartbeat.json
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc      8192 Dec  2 15:31 boinc_mmap_file
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc        29 Dec  2 15:31 wrapper_checkpoint.txt
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc      4884 Dec  2 15:31 pilotlog.txt
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc  11517827 Dec  2 15:31 log.47556173._002607.job.log.1
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc       353 Dec  2 15:31 output.list
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc       620 Dec  2 15:31 runtime_log
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc  14018560 Dec  2 15:31 result.tar.gz
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc      8833 Dec  2 15:31 runtime_log.err
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc       662 Dec  2 15:31 rsDODmM0fi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuVKKDm7jZoWo.diag
[2025-12-02 15:31:36] -rw-r--r--. 1 boinc boinc     21215 Dec  2 15:31 stderr.txt
[2025-12-02 15:31:36] HITS file was successfully produced:
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc 936344788 Dec  2 15:27 shared/HITS.pool.root.1
[2025-12-02 15:31:36]  *** Contents of shared directory: ***
[2025-12-02 15:31:36] total 1329856
[2025-12-02 15:31:36] -rw-r--r--. 2 boinc boinc 410794396 Dec  1 15:21 ATLAS.root_0
[2025-12-02 15:31:36] -rw-r--r--. 2 boinc boinc     15847 Dec  1 15:21 start_atlas.sh
[2025-12-02 15:31:36] -rw-r--r--. 2 boinc boinc    590111 Dec  1 15:21 input.tar.gz
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc 936344788 Dec  2 15:27 HITS.pool.root.1
[2025-12-02 15:31:36] -rw-------. 1 boinc boinc  14018560 Dec  2 15:31 result.tar.gz
15:31:38 (31145): run_atlas exited; CPU time 327964.887261
15:31:38 (31145): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN