Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:10:14 (316388): wrapper (7.7.26015): starting
14:10:14 (316388): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 14:10:14] Arguments: --nthreads 8
[2025-11-29 14:10:14] Threads: 8
[2025-11-29 14:10:14] Checking for CVMFS
[2025-11-29 14:10:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 14:10:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 14:10:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 14:10:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 14:10:18] 2.13.3.0 9438 34750 374524 153453 0 168 37255750 40960001 62832 16776704 0 510520284 99.779 292392372 46287 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 14:10:18] CVMFS is ok
[2025-11-29 14:10:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 14:10:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 14:10:18] Further information can be found at the LHC@home message board.
[2025-11-29 14:10:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 14:10:18] Checking for apptainer binary...
[2025-11-29 14:10:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 14:10:18] Running /usr/bin/apptainer --version
[2025-11-29 14:10:18] apptainer version 1.4.4-1.el9
[2025-11-29 14:10:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 14:10:18] c8-7-3.aglt2.org
[2025-11-29 14:10:18] apptainer works
[2025-11-29 14:10:18] Set ATHENA_PROC_NUMBER=8
[2025-11-29 14:10:18] Set ATHENA_CORE_NUMBER=8
[2025-11-29 14:10:19] Starting ATLAS job with PandaID=6893869475
[2025-11-29 14:10:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 08:39:23]  *** The last 200 lines of the pilot log: ***
[2025-11-30 08:39:23] 2025-11-30 13:38:08,865 | INFO     | time since job start (66363s) is within the limit (172800.0s)
[2025-11-30 08:39:23] 2025-11-30 13:38:10,401 | INFO     | monitor loop #3180: job 0:6893869475 is in state 'finished'
[2025-11-30 08:39:23] 2025-11-30 13:38:10,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 08:39:23] 2025-11-30 13:38:10,879 | INFO     | time since job start (66365s) is within the limit (172800.0s)
[2025-11-30 08:39:23] 2025-11-30 13:38:12,892 | INFO     | time since job start (66367s) is within the limit (172800.0s)
[2025-11-30 08:39:23] 2025-11-30 13:38:12,917 | INFO     | monitor loop #3181: job 0:6893869475 is in state 'finished'
[2025-11-30 08:39:23] 2025-11-30 13:38:12,917 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 08:39:23] 2025-11-30 13:38:14,905 | INFO     | time since job start (66369s) is within the limit (172800.0s)
[2025-11-30 08:39:23] 2025-11-30 13:38:15,428 | INFO     | monitor loop #3182: job 0:6893869475 is in state 'finished'
[2025-11-30 08:39:23] 2025-11-30 13:38:15,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 08:39:23] 2025-11-30 13:38:16,931 | INFO     | time since job start (66371s) is within the limit (172800.0s)
[2025-11-30 08:39:23] 2025-11-30 13:38:17,940 | INFO     | monitor loop #3183: job 0:6893869475 is in state 'finished'
[2025-11-30 08:39:23] 2025-11-30 13:38:17,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 08:39:23] 2025-11-30 13:38:18,948 | INFO     | time since job start (66373s) is within the limit (172800.0s)
[2025-11-30 08:39:23] 2025-11-30 13:38:20,445 | INFO     | monitor loop #3184: job 0:6893869475 is in state 'finished'
[2025-11-30 08:39:23] 2025-11-30 13:38:20,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 08:39:23] 2025-11-30 13:38:20,709 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-30 08:39:23] 2025-11-30 13:38:20,735 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1311796875007
[2025-11-30 08:39:23] 2025-11-30 13:38:20,807 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893869475/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 08:39:23] 2025-11-30 13:38:20,807 | INFO     | extracted standard info from prmon json
[2025-11-30 08:39:23] 2025-11-30 13:38:20,807 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 08:39:23] 2025-11-30 13:38:20,807 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 08:39:23] 2025-11-30 13:38:20,858 | INFO     | fitting pss+swap vs Time
[2025-11-30 08:39:23] 2025-11-30 13:38:20,859 | INFO     | sum of square deviations: 394982615744.4226
[2025-11-30 08:39:23] 2025-11-30 13:38:20,971 | INFO     | time since job start (66375s) is within the limit (172800.0s)
[2025-11-30 08:39:23] 2025-11-30 13:38:21,001 | INFO     | sum of deviations: 649231605908.9651
[2025-11-30 08:39:23] 2025-11-30 13:38:21,001 | INFO     | mean x: 1764476789.0230627
[2025-11-30 08:39:23] 2025-11-30 13:38:21,001 | INFO     | mean y: 2823578.521217712
[2025-11-30 08:39:23] 2025-11-30 13:38:21,001 | INFO     | intersect: -2897441024.688001
[2025-11-30 08:39:23] 2025-11-30 13:38:21,025 | INFO     | chi2: 42.842096441219326
[2025-11-30 08:39:23] 2025-11-30 13:38:21,026 | INFO     | sum of square deviations: 389543143232.447
[2025-11-30 08:39:23] 2025-11-30 13:38:21,082 | INFO     | sum of deviations: 1022780896865.8157
[2025-11-30 08:39:23] 2025-11-30 13:38:21,082 | INFO     | mean x: 1764476636.5347545
[2025-11-30 08:39:23] 2025-11-30 13:38:21,082 | INFO     | mean y: 2834047.378127896
[2025-11-30 08:39:23] 2025-11-30 13:38:21,082 | INFO     | intersect: -4629959593.497011
[2025-11-30 08:39:23] 2025-11-30 13:38:21,106 | INFO     | chi2: 38.85534308080023
[2025-11-30 08:39:23] 2025-11-30 13:38:21,106 | INFO     | current chi2=38.85534308080023 (change=9.305691578116496 %)
[2025-11-30 08:39:23] 2025-11-30 13:38:21,106 | INFO     | right removable region: 1078
[2025-11-30 08:39:23] 2025-11-30 13:38:21,107 | INFO     | sum of square deviations: 389541474882.4472
[2025-11-30 08:39:23] 2025-11-30 13:38:21,258 | INFO     | sum of deviations: 205959299163.05536
[2025-11-30 08:39:23] 2025-11-30 13:38:21,258 | INFO     | mean x: 1764476941.5347545
[2025-11-30 08:39:23] 2025-11-30 13:38:21,258 | INFO     | mean y: 2836001.745134384
[2025-11-30 08:39:23] 2025-11-30 13:38:21,258 | INFO     | intersect: -930082461.8858222
[2025-11-30 08:39:23] 2025-11-30 13:38:21,259 | INFO     | chi2: 38.50522968861418
[2025-11-30 08:39:23] 2025-11-30 13:38:21,259 | INFO     | current chi2=38.50522968861418 (change=10.12290973798507 %)
[2025-11-30 08:39:23] 2025-11-30 13:38:21,259 | INFO     | left removable region: 10
[2025-11-30 08:39:23] 2025-11-30 13:38:21,260 | INFO     | sum of square deviations: 377749297753.0442
[2025-11-30 08:39:23] 2025-11-30 13:38:21,338 | INFO     | sum of deviations: 267604870476.8847
[2025-11-30 08:39:23] 2025-11-30 13:38:21,338 | INFO     | mean x: 1764476911.0608613
[2025-11-30 08:39:23] 2025-11-30 13:38:21,338 | INFO     | mean y: 2859321.324906367
[2025-11-30 08:39:23] 2025-11-30 13:38:21,338 | INFO     | intersect: -1247130071.2499213
[2025-11-30 08:39:23] 2025-11-30 13:38:21,339 | INFO     | chi2: 30.74269925140168
[2025-11-30 08:39:23] 2025-11-30 13:38:21,339 | INFO     | current memory leak: 0.71 B/s (using 1068 data points, chi2=30.74)
[2025-11-30 08:39:23] 2025-11-30 13:38:21,340 | INFO     | could have reported an average CPU frequency of 3798 MHz (39 samples)
[2025-11-30 08:39:23] 2025-11-30 13:38:21,340 | INFO     | ..............................
[2025-11-30 08:39:23] 2025-11-30 13:38:21,340 | INFO     | . Timing measurements:
[2025-11-30 08:39:23] 2025-11-30 13:38:21,340 | INFO     | . get job = 0 s
[2025-11-30 08:39:23] 2025-11-30 13:38:21,340 | INFO     | . initial setup = 5 s
[2025-11-30 08:39:23] 2025-11-30 13:38:21,340 | INFO     | . payload setup = 65 s
[2025-11-30 08:39:23] 2025-11-30 13:38:21,340 | INFO     | . stage-in = 0 s
[2025-11-30 08:39:23] 2025-11-30 13:38:21,340 | INFO     | . payload execution = 66134 s
[2025-11-30 08:39:23] 2025-11-30 13:38:21,341 | INFO     | . stage-out = 10 s
[2025-11-30 08:39:23] 2025-11-30 13:38:21,341 | INFO     | . log creation = 2 s
[2025-11-30 08:39:23] 2025-11-30 13:38:21,341 | INFO     | ..............................
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | 
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | job summary report
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | --------------------------------------------------
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | PanDA job id: 6893869475
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | task id: 47523449
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | errors: (none)
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | pilot state: finished 
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | transexitcode: 0
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | exeerrorcode: 0
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | exeerrordiag: 
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | exitcode: 0
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | exitmsg: OK
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | cpuconsumptiontime: 136739 s
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | nevents: 1000
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | neventsw: 0
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | pid: 346977
[2025-11-30 08:39:23] 2025-11-30 13:38:21,780 | INFO     | pgrp: 346977
[2025-11-30 08:39:23] 2025-11-30 13:38:21,781 | INFO     | corecount: 8
[2025-11-30 08:39:23] 2025-11-30 13:38:21,781 | INFO     | event service: False
[2025-11-30 08:39:23] 2025-11-30 13:38:21,781 | INFO     | sizes: {0: 2284143, 1: 2284342, 2: 2284370, 13: 2284370, 24: 2284426, 35: 2284454, 46: 2284610, 48: 2284900, 57: 2284928, 66202: 2338312, 66214: 2347306, 66217: 23
[2025-11-30 08:39:23] 2025-11-30 13:38:21,781 | INFO     | --------------------------------------------------
[2025-11-30 08:39:23] 2025-11-30 13:38:21,781 | INFO     | 
[2025-11-30 08:39:23] 2025-11-30 13:38:21,781 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-30 08:39:23] 2025-11-30 13:38:22,138 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,138 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,138 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,138 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | job 6893869475 has completed (purged errors)
[2025-11-30 08:39:23] 2025-11-30 13:38:22,139 | INFO     | overall cleanup function is called
[2025-11-30 08:39:23] 2025-11-30 13:38:23,219 | INFO     | --- collectZombieJob: --- 10, [346977]
[2025-11-30 08:39:23] 2025-11-30 13:38:23,219 | INFO     | zombie collector waiting for pid 346977
[2025-11-30 08:39:23] 2025-11-30 13:38:23,219 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 08:39:23] 2025-11-30 13:38:23,219 | INFO     | collected zombie processes
[2025-11-30 08:39:23] 2025-11-30 13:38:23,219 | INFO     | will attempt to kill all subprocesses of pid=346977
[2025-11-30 08:39:23] 2025-11-30 13:38:29,232 | INFO     | process IDs to be killed: [346977] (in reverse order)
[2025-11-30 08:39:23] 2025-11-30 13:38:29,988 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 08:39:23] 2025-11-30 13:38:29,988 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 08:39:23] 2025-11-30 13:38:30,239 | INFO     | did not find any defunct processes belonging to 346977
[2025-11-30 08:39:23] 2025-11-30 13:38:30,538 | INFO     | did not find any defunct processes belonging to 346977
[2025-11-30 08:39:23] 2025-11-30 13:38:30,723 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 08:39:23] 2025-11-30 13:38:30,723 | INFO     | ready for new job
[2025-11-30 08:39:23] 2025-11-30 13:38:30,723 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 08:39:23] 2025-11-30 13:38:30,783 | INFO     | ***************************************
[2025-11-30 08:39:23] 2025-11-30 13:38:30,783 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 08:39:23] 2025-11-30 13:38:30,783 | INFO     | ***************************************
[2025-11-30 08:39:23] 2025-11-30 13:38:30,783 | INFO     | 
[2025-11-30 08:39:23] 2025-11-30 13:38:30,851 | INFO     | architecture information:
[2025-11-30 08:39:23] 2025-11-30 13:38:30,942 | INFO     | executing command: cat /etc/os-release
[2025-11-30 08:39:23] 2025-11-30 13:38:31,136 | INFO     | cat /etc/os-release:
[2025-11-30 08:39:23] NAME="CentOS Linux"
[2025-11-30 08:39:23] VERSION="7 (Core)"
[2025-11-30 08:39:23] ID="centos"
[2025-11-30 08:39:23] ID_LIKE="rhel fedora"
[2025-11-30 08:39:23] VERSION_ID="7"
[2025-11-30 08:39:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 08:39:23] ANSI_COLOR="0;31"
[2025-11-30 08:39:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 08:39:23] HOME_URL="https://www.centos.org/"
[2025-11-30 08:39:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 08:39:23] 
[2025-11-30 08:39:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 08:39:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 08:39:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 08:39:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 08:39:23] 
[2025-11-30 08:39:23] 2025-11-30 13:38:31,136 | INFO     | ***************************************
[2025-11-30 08:39:23] 2025-11-30 13:38:31,648 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-30 08:39:23] 2025-11-30 13:38:31,690 | INFO     | sufficient remaining disk space (151570612224 B)
[2025-11-30 08:39:23] 2025-11-30 13:38:31,690 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 08:39:23] 2025-11-30 13:38:31,690 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 08:39:23] 2025-11-30 13:38:31,690 | INFO     | update_server=False
[2025-11-30 08:39:23] 2025-11-30 13:38:31,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 08:39:23] 2025-11-30 13:38:31,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 08:39:23] 2025-11-30 13:38:31,690 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 08:39:23] 2025-11-30 13:38:31,691 | INFO     | aborting loop
[2025-11-30 08:39:23] 2025-11-30 13:38:31,691 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 08:39:23] 2025-11-30 13:38:31,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 08:39:23] 2025-11-30 13:38:32,407 | INFO     | all payload control threads have been joined
[2025-11-30 08:39:23] 2025-11-30 13:38:32,571 | INFO     | all data control threads have been joined
[2025-11-30 08:39:23] 2025-11-30 13:38:32,696 | INFO     | [job] retrieve thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:32,696 | INFO     | [job] queue monitor thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:32,696 | INFO     | [job] job monitor thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:32,840 | INFO     | all job control threads have been joined
[2025-11-30 08:39:23] 2025-11-30 13:38:33,413 | INFO     | [payload] control thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:33,577 | INFO     | [data] control thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:33,612 | INFO     | [payload] validate_post thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:33,627 | INFO     | [job] validate thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:33,651 | INFO     | [payload] failed_post thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:33,723 | INFO     | [data] copytool_out thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:33,846 | INFO     | [job] control thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:34,069 | INFO     | [data] copytool_in thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:34,081 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:34,084 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:34,133 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:34,158 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:38:35,707 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 08:39:23] 2025-11-30 13:39:00,187 | INFO     | PID=331032 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-30 08:39:23] 2025-11-30 13:39:00,221 | INFO     | .. there are 97 such processes running
[2025-11-30 08:39:23] 2025-11-30 13:39:00,235 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 08:39:23] 2025-11-30 13:39:00,235 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 08:39:23] 2025-11-30 13:39:00,235 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 08:39:23] 2025-11-30 13:39:07,672 | INFO     | [monitor] cgroup control has ended
[2025-11-30 08:39:23] 2025-11-30 13:39:08,470 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140058071152448)>', '<ExcThread(monitor, started 140057583273728)>']
[2025-11-30 08:39:23] 2025-11-30 13:39:09,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 08:39:23] 2025-11-30 13:39:09,287 | INFO     | [monitor] control thread has ended
[2025-11-30 08:39:23] 2025-11-30 13:39:13,510 | INFO     | all workflow threads have been joined
[2025-11-30 08:39:23] 2025-11-30 13:39:13,510 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 08:39:23] 2025-11-30 13:39:13,510 | INFO     | traces error code: 0
[2025-11-30 08:39:23] 2025-11-30 13:39:13,510 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 08:39:23] 2025-11-30 13:39:18,322 [wrapper] ==== pilot stdout END ====
[2025-11-30 08:39:23] 2025-11-30 13:39:18,359 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 08:39:23] 2025-11-30 13:39:18,399 [wrapper] pilotpid: 331032
[2025-11-30 08:39:23] 2025-11-30 13:39:18,459 [wrapper] Pilot exit status: 0
[2025-11-30 08:39:23] 2025-11-30 13:39:18,746 [wrapper] pandaids: 6893869475
[2025-11-30 08:39:23] 2025-11-30 13:39:21,696 [wrapper] cleanup supervisor_pilot  863877 331033
[2025-11-30 08:39:23] 2025-11-30 13:39:21,725 [wrapper] Test setup, not cleaning
[2025-11-30 08:39:23] 2025-11-30 13:39:21,800 [wrapper] apfmon messages muted
[2025-11-30 08:39:23] 2025-11-30 13:39:21,814 [wrapper] ==== wrapper stdout END ====
[2025-11-30 08:39:23] 2025-11-30 13:39:21,878 [wrapper] ==== wrapper stderr END ====
[2025-11-30 08:39:23]  *** Error codes and diagnostics ***
[2025-11-30 08:39:23]     "exeErrorCode": 0,
[2025-11-30 08:39:23]     "exeErrorDiag": "",
[2025-11-30 08:39:23]     "pilotErrorCode": 0,
[2025-11-30 08:39:23]     "pilotErrorDiag": "",
[2025-11-30 08:39:23]  *** Listing of results directory ***
[2025-11-30 08:39:23] total 1333028
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 09:41 queuedata.json
[2025-11-30 08:39:23] -rwx------. 1 boincer umatlas     36292 Nov 20 09:42 runpilot2-wrapper.sh
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas       100 Nov 29 14:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 08:39:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 14:10 run_atlas
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas       105 Nov 29 14:10 job.xml
[2025-11-30 08:39:23] -rw-r--r--. 2 boincer umatlas 410487452 Nov 29 14:10 EVNT.47493127._000635.pool.root.1
[2025-11-30 08:39:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 14:10 start_atlas.sh
[2025-11-30 08:39:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 14:10 shared
[2025-11-30 08:39:23] -rw-r--r--. 2 boincer umatlas    611280 Nov 29 14:10 input.tar.gz
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas         0 Nov 29 14:10 boinc_lockfile
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas      2785 Nov 29 14:10 pandaJob.out
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas        57 Nov 29 14:10 setup.sh.local
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas    991834 Nov 29 14:12 agis_schedconf.cvmfs.json
[2025-11-30 08:39:23] drwx------. 7 boincer umatlas      4096 Nov 29 14:12 pilot3
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas       533 Nov 30 07:48 boinc_task_state.xml
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas 931808951 Nov 30 08:35 HITS.47523449._006347.pool.root.1
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas      1052 Nov 30 08:37 memory_monitor_summary.json
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas   1516240 Nov 30 08:37 agis_ddmendpoints.agis.ALL.json
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas   2104293 Nov 30 08:37 log.47523449._006347.job.log.tgz.1
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas      8583 Nov 30 08:38 heartbeat.json
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas      7173 Nov 30 08:38 init_data.xml
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas        95 Nov 30 08:39 pilot_heartbeat.json
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas      4824 Nov 30 08:39 pilotlog.txt
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas   7276226 Nov 30 08:39 log.47523449._006347.job.log.1
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas       353 Nov 30 08:39 output.list
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas       620 Nov 30 08:39 runtime_log
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas        29 Nov 30 08:39 wrapper_checkpoint.txt
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 30 08:39 boinc_mmap_file
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas   9400320 Nov 30 08:39 result.tar.gz
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas      9333 Nov 30 08:39 runtime_log.err
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas       660 Nov 30 08:39 FQfKDmC3Kg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmd7HKDmRLRs9n.diag
[2025-11-30 08:39:23] -rw-r--r--. 1 boincer umatlas     16400 Nov 30 08:39 stderr.txt
[2025-11-30 08:39:23] HITS file was successfully produced:
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas 931808951 Nov 30 08:35 shared/HITS.pool.root.1
[2025-11-30 08:39:23]  *** Contents of shared directory: ***
[2025-11-30 08:39:23] total 1320644
[2025-11-30 08:39:23] -rw-r--r--. 2 boincer umatlas 410487452 Nov 29 14:10 ATLAS.root_0
[2025-11-30 08:39:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 14:10 start_atlas.sh
[2025-11-30 08:39:23] -rw-r--r--. 2 boincer umatlas    611280 Nov 29 14:10 input.tar.gz
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas 931808951 Nov 30 08:35 HITS.pool.root.1
[2025-11-30 08:39:23] -rw-------. 1 boincer umatlas   9400320 Nov 30 08:39 result.tar.gz
08:39:25 (316388): run_atlas exited; CPU time 138027.305860
08:39:25 (316388): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN