Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:48:00 (221296): wrapper (7.7.26015): starting
11:48:00 (221296): wrapper: running run_atlas (--nthreads 3)
[2025-12-02 11:48:00] Arguments: --nthreads 3
[2025-12-02 11:48:00] Threads: 3
[2025-12-02 11:48:00] Checking for CVMFS
[2025-12-02 11:48:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 11:48:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 11:48:00] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 11:48:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 11:48:00] 2.9.2.0 9581 1366 64308 153550 0 68 36433955 36864000 0 130560 0 520568 99.984 48254 1406 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-02 11:48:00] CVMFS is ok
[2025-12-02 11:48:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 11:48:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 11:48:00] Further information can be found at the LHC@home message board.
[2025-12-02 11:48:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 11:48:00] Checking for apptainer binary...
[2025-12-02 11:48:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 11:48:00] Running /usr/bin/apptainer --version
[2025-12-02 11:48:00] apptainer version 1.4.1-1.1
[2025-12-02 11:48:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 11:48:00] atlasA230
[2025-12-02 11:48:00] apptainer works
[2025-12-02 11:48:00] Set ATHENA_PROC_NUMBER=3
[2025-12-02 11:48:00] Set ATHENA_CORE_NUMBER=3
[2025-12-02 11:48:00] Starting ATLAS job with PandaID=6899424978
[2025-12-02 11:48:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:11:19 (250661): wrapper (7.7.26015): starting
13:11:19 (250661): wrapper: running run_atlas (--nthreads 3)
[2025-12-02 13:11:19] Arguments: --nthreads 3
[2025-12-02 13:11:19] Threads: 3
[2025-12-02 13:11:19] This job has been restarted, cleaning up previous attempt
[2025-12-02 13:11:19] Checking for CVMFS
[2025-12-02 13:11:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 13:11:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 13:11:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 13:11:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 13:11:19] 2.9.2.0 9581 1449 65996 153550 1 110 36442447 36864000 0 130560 0 588614 99.984 48378 1408 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-02 13:11:19] CVMFS is ok
[2025-12-02 13:11:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 13:11:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 13:11:19] Further information can be found at the LHC@home message board.
[2025-12-02 13:11:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 13:11:19] Checking for apptainer binary...
[2025-12-02 13:11:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 13:11:19] Running /usr/bin/apptainer --version
[2025-12-02 13:11:19] apptainer version 1.4.1-1.1
[2025-12-02 13:11:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 13:11:19] atlasA230
[2025-12-02 13:11:19] apptainer works
[2025-12-02 13:11:19] Set ATHENA_PROC_NUMBER=3
[2025-12-02 13:11:19] Set ATHENA_CORE_NUMBER=3
[2025-12-02 13:11:20] Starting ATLAS job with PandaID=6899424978
[2025-12-02 13:11:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 21:20:15]  *** The last 200 lines of the pilot log: ***
[2025-12-02 21:20:15] 2025-12-02 20:19:45,819 | INFO     | update_server=False
[2025-12-02 21:20:15] 2025-12-02 20:19:45,819 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 21:20:15] 2025-12-02 20:19:45,819 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 21:20:15] 2025-12-02 20:19:45,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 21:20:15] 2025-12-02 20:19:45,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 21:20:15] 2025-12-02 20:19:45,819 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 21:20:15] 2025-12-02 20:19:45,820 | INFO     | aborting loop
[2025-12-02 21:20:15] 2025-12-02 20:19:45,944 | INFO     | all job control threads have been joined
[2025-12-02 21:20:15] 2025-12-02 20:19:46,461 | INFO     | all payload control threads have been joined
[2025-12-02 21:20:15] 2025-12-02 20:19:46,722 | INFO     | all data control threads have been joined
[2025-12-02 21:20:15] 2025-12-02 20:19:46,825 | INFO     | [job] queue monitor thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:46,825 | INFO     | [job] retrieve thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:46,825 | INFO     | [job] job monitor thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:46,950 | INFO     | [job] control thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:47,212 | INFO     | [payload] validate_post thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:47,346 | INFO     | [job] validate thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:47,347 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:47,467 | INFO     | [payload] control thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:47,641 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:47,727 | INFO     | [data] control thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:47,821 | INFO     | [data] copytool_out thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:47,859 | INFO     | [payload] failed_post thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:47,984 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:48,309 | INFO     | [data] copytool_in thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:49,826 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:19:56,437 | INFO     | job.realtimelogging is not enabled
[2025-12-02 21:20:15] 2025-12-02 20:19:57,443 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 21:20:15] 2025-12-02 20:20:01,970 | INFO     | [monitor] cgroup control has ended
[2025-12-02 21:20:15] 2025-12-02 20:20:02,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140182032357184)>', '<ExcThread(monitor, started 140181424305920)>']
[2025-12-02 21:20:15] 2025-12-02 20:20:07,981 | INFO     | all workflow threads have been joined
[2025-12-02 21:20:15] 2025-12-02 20:20:07,981 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 21:20:15] 2025-12-02 20:20:07,981 | INFO     | traces error code: 0
[2025-12-02 21:20:15] 2025-12-02 20:20:07,981 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 21:20:15] 2025-12-02 20:20:15,420 | INFO     | PID=254709 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 21:20:15] 2025-12-02 20:20:15,420 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 21:20:15] 2025-12-02 20:20:15,420 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 21:20:15] 2025-12-02 20:20:15,420 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 21:20:15] 2025-12-02 20:20:15,420 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 21:20:15] 2025-12-02 20:20:15,420 | INFO     | [monitor] control thread has ended
[2025-12-02 21:20:15] 2025-12-02 20:20:15,470 [wrapper] ==== pilot stdout END ====
[2025-12-02 21:20:15] 2025-12-02 20:20:15,473 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 21:20:15] 2025-12-02 20:20:15,475 [wrapper] pilotpid: 254709
[2025-12-02 21:20:15] 2025-12-02 20:20:15,477 [wrapper] Pilot exit status: 0
[2025-12-02 21:20:15] 2025-12-02 20:20:15,484 [wrapper] pandaids: 6899424978 6899424978
[2025-12-02 21:20:15] 2025-12-02 20:20:15,503 [wrapper] cleanup supervisor_pilot  344290 254710
[2025-12-02 21:20:15] 2025-12-02 20:20:15,505 [wrapper] Test setup, not cleaning
[2025-12-02 21:20:15] 2025-12-02 20:20:15,507 [wrapper] apfmon messages muted
[2025-12-02 21:20:15] 2025-12-02 20:20:15,510 [wrapper] ==== wrapper stdout END ====
[2025-12-02 21:20:15] 2025-12-02 20:20:15,512 [wrapper] ==== wrapper stderr END ====
[2025-12-02 21:20:15]  *** Error codes and diagnostics ***
[2025-12-02 21:20:15]     "exeErrorCode": 0,
[2025-12-02 21:20:15]     "exeErrorDiag": "",
[2025-12-02 21:20:15]     "pilotErrorCode": 0,
[2025-12-02 21:20:15]     "pilotErrorDiag": "",
[2025-12-02 21:20:15]  *** Listing of results directory ***
[2025-12-02 21:20:15] total 1725144
[2025-12-02 21:20:15] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc    576529 Nov 27 02:09 pilot3.tar.gz
[2025-12-02 21:20:15] -rwx------ 1 boinc boinc     36292 Nov 27 02:26 runpilot2-wrapper.sh
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc      5112 Nov 27 02:27 queuedata.json
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc       100 Dec  2 11:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 21:20:15] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 11:48 run_atlas
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc       105 Dec  2 11:48 job.xml
[2025-12-02 21:20:15] -rw-r--r-- 3 boinc boinc 412126203 Dec  2 11:48 EVNT.47483658._003296.pool.root.1
[2025-12-02 21:20:15] -rw-r--r-- 3 boinc boinc 412126203 Dec  2 11:48 ATLAS.root_0
[2025-12-02 21:20:15] drwxrwx--x 2 boinc boinc      4096 Dec  2 11:48 shared
[2025-12-02 21:20:15] -rw-r--r-- 2 boinc boinc    590109 Dec  2 11:48 input.tar.gz
[2025-12-02 21:20:15] -rw-r--r-- 2 boinc boinc     15847 Dec  2 11:48 start_atlas.sh
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc         0 Dec  2 11:48 boinc_setup_complete
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc         0 Dec  2 11:48 boinc_lockfile
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc      6450 Dec  2 13:11 init_data.xml
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc      2787 Dec  2 13:11 pandaJob.out
[2025-12-02 21:20:15] -rw------- 1 boinc boinc    986791 Dec  2 13:11 agis_schedconf.cvmfs.json
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc       531 Dec  2 21:15 boinc_task_state.xml
[2025-12-02 21:20:15] -rw------- 1 boinc boinc 927809665 Dec  2 21:19 HITS.47556173._002527.pool.root.1
[2025-12-02 21:20:15] -rw------- 1 boinc boinc      1040 Dec  2 21:19 memory_monitor_summary.json
[2025-12-02 21:20:15] -rw------- 1 boinc boinc   1516240 Dec  2 21:19 agis_ddmendpoints.agis.ALL.json
[2025-12-02 21:20:15] -rw------- 1 boinc boinc   1175341 Dec  2 21:19 log.47556173._002527.job.log.tgz.1
[2025-12-02 21:20:15] -rw------- 1 boinc boinc      8572 Dec  2 21:19 heartbeat.json
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc      8192 Dec  2 21:19 boinc_mmap_file
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc        28 Dec  2 21:19 wrapper_checkpoint.txt
[2025-12-02 21:20:15] -rw------- 1 boinc boinc       746 Dec  2 21:20 pilotlog.txt
[2025-12-02 21:20:15] -rw------- 1 boinc boinc        97 Dec  2 21:20 pilot_heartbeat.json
[2025-12-02 21:20:15] -rw------- 1 boinc boinc   4115950 Dec  2 21:20 log.47556173._002527.job.log.1
[2025-12-02 21:20:15] -rw------- 1 boinc boinc       353 Dec  2 21:20 output.list
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc       620 Dec  2 21:20 runtime_log
[2025-12-02 21:20:15] -rw------- 1 boinc boinc   5314560 Dec  2 21:20 result.tar.gz
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc      8998 Dec  2 21:20 runtime_log.err
[2025-12-02 21:20:15] -rw------- 1 boinc boinc       793 Dec  2 21:20 OxnMDmlxfi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzYNKDmVabw6m.diag
[2025-12-02 21:20:15] -rw-r--r-- 1 boinc boinc      9634 Dec  2 21:20 stderr.txt
[2025-12-02 21:20:15] HITS file was successfully produced:
[2025-12-02 21:20:15] -rw------- 1 boinc boinc 927809665 Dec  2 21:19 shared/HITS.pool.root.1
[2025-12-02 21:20:15]  *** Contents of shared directory: ***
[2025-12-02 21:20:15] total 1314332
[2025-12-02 21:20:15] -rw-r--r-- 3 boinc boinc 412126203 Dec  2 11:48 ATLAS.root_0
[2025-12-02 21:20:15] -rw-r--r-- 2 boinc boinc    590109 Dec  2 11:48 input.tar.gz
[2025-12-02 21:20:15] -rw-r--r-- 2 boinc boinc     15847 Dec  2 11:48 start_atlas.sh
[2025-12-02 21:20:15] -rw------- 1 boinc boinc 927809665 Dec  2 21:19 HITS.pool.root.1
[2025-12-02 21:20:15] -rw------- 1 boinc boinc   5314560 Dec  2 21:20 result.tar.gz
21:20:16 (250661): run_atlas exited; CPU time 86575.321508
21:20:16 (250661): called boinc_finish(0)

</stderr_txt>
]]>

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