Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:49:17 (26752): wrapper (7.7.26015): starting
11:49:17 (26752): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 11:49:17] Arguments: --nthreads 8
[2025-11-29 11:49:17] Threads: 8
[2025-11-29 11:49:17] Checking for CVMFS
[2025-11-29 11:49:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 11:49:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 11:49:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 11:49:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 11:49:17] 2.11.2.0 17210 122247 149016 153449 1 89 11478913 18432001 1555 130560 0 90646109 99.976 5174908 29586 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 11:49:17] CVMFS is ok
[2025-11-29 11:49:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 11:49:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 11:49:17] Further information can be found at the LHC@home message board.
[2025-11-29 11:49:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 11:49:17] Checking for apptainer binary...
[2025-11-29 11:49:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 11:49:17] Running /usr/bin/apptainer --version
[2025-11-29 11:49:17] apptainer version 1.3.2-1.el7
[2025-11-29 11:49:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 11:49:18] c-206-14.aglt2.org
[2025-11-29 11:49:18] apptainer works
[2025-11-29 11:49:18] Set ATHENA_PROC_NUMBER=8
[2025-11-29 11:49:18] Set ATHENA_CORE_NUMBER=8
[2025-11-29 11:49:18] Starting ATLAS job with PandaID=6892544861
[2025-11-29 11:49:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 07:07:32]  *** The last 200 lines of the pilot log: ***
[2025-11-30 07:07:32] 2025-11-30 12:06:53,977 | INFO     | time since job start (69443s) is within the limit (172800.0s)
[2025-11-30 07:07:32] 2025-11-30 12:06:55,125 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-30 07:07:32] 2025-11-30 12:06:55,132 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2439.0833333333335
[2025-11-30 07:07:32] 2025-11-30 12:06:55,136 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6892544861/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 07:07:32] 2025-11-30 12:06:55,137 | INFO     | extracted standard info from prmon json
[2025-11-30 07:07:32] 2025-11-30 12:06:55,137 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 07:07:32] 2025-11-30 12:06:55,137 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 07:07:32] 2025-11-30 12:06:55,167 | INFO     | fitting pss+swap vs Time
[2025-11-30 07:07:32] 2025-11-30 12:06:55,169 | INFO     | sum of square deviations: 456987548105.29395
[2025-11-30 07:07:32] 2025-11-30 12:06:55,204 | INFO     | sum of deviations: 2293817107558.6406
[2025-11-30 07:07:32] 2025-11-30 12:06:55,204 | INFO     | mean x: 1764469674.204745
[2025-11-30 07:07:32] 2025-11-30 12:06:55,205 | INFO     | mean y: 2865426.5852372586
[2025-11-30 07:07:32] 2025-11-30 12:06:55,205 | INFO     | intersect: -8853766972.349876
[2025-11-30 07:07:32] 2025-11-30 12:06:55,206 | INFO     | chi2: 5.134116166166196
[2025-11-30 07:07:32] 2025-11-30 12:06:55,207 | INFO     | sum of square deviations: 450990647710.30164
[2025-11-30 07:07:32] 2025-11-30 12:06:55,253 | INFO     | sum of deviations: 2628935432103.2676
[2025-11-30 07:07:32] 2025-11-30 12:06:55,253 | INFO     | mean x: 1764469521.7078552
[2025-11-30 07:07:32] 2025-11-30 12:06:55,253 | INFO     | mean y: 2873945.644307149
[2025-11-30 07:07:32] 2025-11-30 12:06:55,253 | INFO     | intersect: -10282652967.241447
[2025-11-30 07:07:32] 2025-11-30 12:06:55,255 | INFO     | chi2: 2.4713415922146833
[2025-11-30 07:07:32] 2025-11-30 12:06:55,255 | INFO     | current chi2=2.4713415922146833 (change=51.86432265594585 %)
[2025-11-30 07:07:32] 2025-11-30 12:06:55,257 | INFO     | sum of square deviations: 445046377109.20483
[2025-11-30 07:07:32] 2025-11-30 12:06:55,302 | INFO     | sum of deviations: 2704147927132.607
[2025-11-30 07:07:32] 2025-11-30 12:06:55,303 | INFO     | mean x: 1764469369.2101064
[2025-11-30 07:07:32] 2025-11-30 12:06:55,303 | INFO     | mean y: 2875872.385638298
[2025-11-30 07:07:32] 2025-11-30 12:06:55,303 | INFO     | intersect: -10718222944.845474
[2025-11-30 07:07:32] 2025-11-30 12:06:55,305 | INFO     | chi2: 2.218943790897325
[2025-11-30 07:07:32] 2025-11-30 12:06:55,305 | INFO     | current chi2=2.218943790897325 (change=10.212987233835737 %)
[2025-11-30 07:07:32] 2025-11-30 12:06:55,305 | INFO     | right removable region: 1127
[2025-11-30 07:07:32] 2025-11-30 12:06:55,307 | INFO     | sum of square deviations: 450990227664.7154
[2025-11-30 07:07:32] 2025-11-30 12:06:55,352 | INFO     | sum of deviations: 2025148395747.9377
[2025-11-30 07:07:32] 2025-11-30 12:06:55,352 | INFO     | mean x: 1764469826.7069726
[2025-11-30 07:07:32] 2025-11-30 12:06:55,353 | INFO     | mean y: 2872249.096204766
[2025-11-30 07:07:32] 2025-11-30 12:06:55,353 | INFO     | intersect: -7920388654.813701
[2025-11-30 07:07:32] 2025-11-30 12:06:55,354 | INFO     | chi2: 3.3195051803805122
[2025-11-30 07:07:32] 2025-11-30 12:06:55,355 | INFO     | current chi2=3.3195051803805122 (change=35.34417467497059 %)
[2025-11-30 07:07:32] 2025-11-30 12:06:55,356 | INFO     | sum of square deviations: 445045744723.4579
[2025-11-30 07:07:32] 2025-11-30 12:06:55,402 | INFO     | sum of deviations: 1936604734080.257
[2025-11-30 07:07:32] 2025-11-30 12:06:55,402 | INFO     | mean x: 1764469979.2074468
[2025-11-30 07:07:32] 2025-11-30 12:06:55,402 | INFO     | mean y: 2874520.255319149
[2025-11-30 07:07:32] 2025-11-30 12:06:55,403 | INFO     | intersect: -7675169715.397212
[2025-11-30 07:07:32] 2025-11-30 12:06:55,404 | INFO     | chi2: 3.238016407126865
[2025-11-30 07:07:32] 2025-11-30 12:06:55,404 | INFO     | current chi2=3.238016407126865 (change=2.454846997536727 %)
[2025-11-30 07:07:32] 2025-11-30 12:06:55,405 | INFO     | left removable region: 20
[2025-11-30 07:07:32] 2025-11-30 12:06:55,406 | INFO     | sum of square deviations: 420649749854.2243
[2025-11-30 07:07:32] 2025-11-30 12:06:55,448 | INFO     | sum of deviations: 2215497657735.4287
[2025-11-30 07:07:32] 2025-11-30 12:06:55,448 | INFO     | mean x: 1764469948.7136405
[2025-11-30 07:07:32] 2025-11-30 12:06:55,448 | INFO     | mean y: 2888702.4019873533
[2025-11-30 07:07:32] 2025-11-30 12:06:55,449 | INFO     | intersect: -9290303650.31983
[2025-11-30 07:07:32] 2025-11-30 12:06:55,450 | INFO     | chi2: 0.24994411552760568
[2025-11-30 07:07:32] 2025-11-30 12:06:55,451 | INFO     | current memory leak: 5.27 B/s (using 1107 data points, chi2=0.25)
[2025-11-30 07:07:32] 2025-11-30 12:06:55,452 | INFO     | could have reported an average CPU frequency of 2609 MHz (41 samples)
[2025-11-30 07:07:32] 2025-11-30 12:06:55,452 | INFO     | ..............................
[2025-11-30 07:07:32] 2025-11-30 12:06:55,452 | INFO     | . Timing measurements:
[2025-11-30 07:07:32] 2025-11-30 12:06:55,452 | INFO     | . get job = 0 s
[2025-11-30 07:07:32] 2025-11-30 12:06:55,453 | INFO     | . initial setup = 2 s
[2025-11-30 07:07:32] 2025-11-30 12:06:55,453 | INFO     | . payload setup = 5 s
[2025-11-30 07:07:32] 2025-11-30 12:06:55,453 | INFO     | . stage-in = 0 s
[2025-11-30 07:07:32] 2025-11-30 12:06:55,453 | INFO     | . payload execution = 69407 s
[2025-11-30 07:07:32] 2025-11-30 12:06:55,453 | INFO     | . stage-out = 3 s
[2025-11-30 07:07:32] 2025-11-30 12:06:55,453 | INFO     | . log creation = 0 s
[2025-11-30 07:07:32] 2025-11-30 12:06:55,454 | INFO     | ..............................
[2025-11-30 07:07:32] 2025-11-30 12:06:55,966 | INFO     | 
[2025-11-30 07:07:32] 2025-11-30 12:06:55,967 | INFO     | job summary report
[2025-11-30 07:07:32] 2025-11-30 12:06:55,967 | INFO     | --------------------------------------------------
[2025-11-30 07:07:32] 2025-11-30 12:06:55,967 | INFO     | PanDA job id: 6892544861
[2025-11-30 07:07:32] 2025-11-30 12:06:55,967 | INFO     | task id: 47493029
[2025-11-30 07:07:32] 2025-11-30 12:06:55,968 | INFO     | errors: (none)
[2025-11-30 07:07:32] 2025-11-30 12:06:55,968 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 07:07:32] 2025-11-30 12:06:55,968 | INFO     | pilot state: finished 
[2025-11-30 07:07:32] 2025-11-30 12:06:55,968 | INFO     | transexitcode: 0
[2025-11-30 07:07:32] 2025-11-30 12:06:55,968 | INFO     | exeerrorcode: 0
[2025-11-30 07:07:32] 2025-11-30 12:06:55,968 | INFO     | exeerrordiag: 
[2025-11-30 07:07:32] 2025-11-30 12:06:55,969 | INFO     | exitcode: 0
[2025-11-30 07:07:32] 2025-11-30 12:06:55,969 | INFO     | exitmsg: OK
[2025-11-30 07:07:32] 2025-11-30 12:06:55,969 | INFO     | cpuconsumptiontime: 538797 s
[2025-11-30 07:07:32] 2025-11-30 12:06:55,969 | INFO     | nevents: 1000
[2025-11-30 07:07:32] 2025-11-30 12:06:55,969 | INFO     | neventsw: 0
[2025-11-30 07:07:32] 2025-11-30 12:06:55,970 | INFO     | pid: 4660
[2025-11-30 07:07:32] 2025-11-30 12:06:55,970 | INFO     | pgrp: 4660
[2025-11-30 07:07:32] 2025-11-30 12:06:55,970 | INFO     | corecount: 8
[2025-11-30 07:07:32] 2025-11-30 12:06:55,970 | INFO     | event service: False
[2025-11-30 07:07:32] 2025-11-30 12:06:55,970 | INFO     | sizes: {0: 2284133, 1: 2284332, 4: 2284594, 11: 2284622, 69417: 2340868, 69422: 2349862, 69424: 2350046, 69431: 2350388}
[2025-11-30 07:07:32] 2025-11-30 12:06:55,970 | INFO     | --------------------------------------------------
[2025-11-30 07:07:32] 2025-11-30 12:06:55,971 | INFO     | 
[2025-11-30 07:07:32] 2025-11-30 12:06:55,971 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-30 07:07:32] 2025-11-30 12:06:55,983 | INFO     | time since job start (69445s) is within the limit (172800.0s)
[2025-11-30 07:07:32] 2025-11-30 12:06:55,989 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,989 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,989 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,990 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,990 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,990 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,990 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,990 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,990 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,991 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,991 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,991 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,991 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,991 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,991 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,992 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,992 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,992 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 07:07:32] 2025-11-30 12:06:55,992 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,992 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 07:07:32] 2025-11-30 12:06:55,993 | INFO     | job 6892544861 has completed (purged errors)
[2025-11-30 07:07:32] 2025-11-30 12:06:55,993 | INFO     | overall cleanup function is called
[2025-11-30 07:07:32] 2025-11-30 12:06:57,009 | INFO     | --- collectZombieJob: --- 10, [4660]
[2025-11-30 07:07:32] 2025-11-30 12:06:57,010 | INFO     | zombie collector waiting for pid 4660
[2025-11-30 07:07:32] 2025-11-30 12:06:57,010 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 07:07:32] 2025-11-30 12:06:57,010 | INFO     | collected zombie processes
[2025-11-30 07:07:32] 2025-11-30 12:06:57,010 | INFO     | will attempt to kill all subprocesses of pid=4660
[2025-11-30 07:07:32] 2025-11-30 12:06:57,182 | INFO     | process IDs to be killed: [4660] (in reverse order)
[2025-11-30 07:07:32] 2025-11-30 12:06:57,239 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 07:07:32] 2025-11-30 12:06:57,240 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 07:07:32] 2025-11-30 12:06:57,243 | INFO     | did not find any defunct processes belonging to 4660
[2025-11-30 07:07:32] 2025-11-30 12:06:57,245 | INFO     | did not find any defunct processes belonging to 4660
[2025-11-30 07:07:32] 2025-11-30 12:06:57,246 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 07:07:32] 2025-11-30 12:06:57,247 | INFO     | ready for new job
[2025-11-30 07:07:32] 2025-11-30 12:06:57,247 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 07:07:32] 2025-11-30 12:06:57,250 | INFO     | ***************************************
[2025-11-30 07:07:32] 2025-11-30 12:06:57,251 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 07:07:32] 2025-11-30 12:06:57,251 | INFO     | ***************************************
[2025-11-30 07:07:32] 2025-11-30 12:06:57,251 | INFO     | 
[2025-11-30 07:07:32] 2025-11-30 12:06:57,252 | INFO     | architecture information:
[2025-11-30 07:07:32] 2025-11-30 12:06:57,252 | INFO     | executing command: cat /etc/os-release
[2025-11-30 07:07:32] 2025-11-30 12:06:57,262 | INFO     | cat /etc/os-release:
[2025-11-30 07:07:32] NAME="CentOS Linux"
[2025-11-30 07:07:32] VERSION="7 (Core)"
[2025-11-30 07:07:32] ID="centos"
[2025-11-30 07:07:32] ID_LIKE="rhel fedora"
[2025-11-30 07:07:32] VERSION_ID="7"
[2025-11-30 07:07:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 07:07:32] ANSI_COLOR="0;31"
[2025-11-30 07:07:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 07:07:32] HOME_URL="https://www.centos.org/"
[2025-11-30 07:07:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 07:07:32] 
[2025-11-30 07:07:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 07:07:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 07:07:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 07:07:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 07:07:32] 
[2025-11-30 07:07:32] 2025-11-30 12:06:57,262 | INFO     | ***************************************
[2025-11-30 07:07:32] 2025-11-30 12:06:57,765 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-30 07:07:32] 2025-11-30 12:06:57,779 | INFO     | sufficient remaining disk space (25147998208 B)
[2025-11-30 07:07:32] 2025-11-30 12:06:57,779 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 07:07:32] 2025-11-30 12:06:57,779 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 07:07:32] 2025-11-30 12:06:57,779 | INFO     | update_server=False
[2025-11-30 07:07:32] 2025-11-30 12:06:57,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 07:07:32] 2025-11-30 12:06:57,780 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 07:07:32] 2025-11-30 12:06:57,780 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-30 07:07:32] 2025-11-30 12:06:57,780 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 07:07:32] 2025-11-30 12:06:57,780 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 07:07:32] 2025-11-30 12:06:57,780 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 07:07:32] 2025-11-30 12:06:57,988 | INFO     | all data control threads have been joined
[2025-11-30 07:07:32] 2025-11-30 12:06:58,005 | INFO     | all payload control threads have been joined
[2025-11-30 07:07:32] 2025-11-30 12:06:58,175 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-30 07:07:32] 2025-11-30 12:06:58,175 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-30 07:07:32] 2025-11-30 12:06:58,176 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 07:07:32] 2025-11-30 12:06:58,176 | INFO     | will abort loop
[2025-11-30 07:07:32] 2025-11-30 12:06:58,785 | INFO     | [job] retrieve thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:06:58,994 | INFO     | [data] control thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:06:59,010 | INFO     | [payload] control thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:06:59,181 | INFO     | [job] job monitor thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:06:59,198 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:06:59,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 07:07:32] 2025-11-30 12:06:59,320 | INFO     | [payload] validate_post thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:06:59,373 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:06:59,402 | INFO     | all job control threads have been joined
[2025-11-30 07:07:32] 2025-11-30 12:06:59,479 | INFO     | [data] copytool_in thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:06:59,683 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:06:59,781 | INFO     | [data] copytool_out thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:06:59,912 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:06:59,917 | INFO     | [job] validate thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:07:00,193 | INFO     | [payload] failed_post thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:07:00,408 | INFO     | [job] control thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:07:00,622 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 07:07:32] 2025-11-30 12:07:01,627 | INFO     | [job] queue monitor thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:07:03,229 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 07:07:32] 2025-11-30 12:07:25,723 | INFO     | [monitor] cgroup control has ended
[2025-11-30 07:07:32] 2025-11-30 12:07:27,461 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140400755742528)>', '<ExcThread(monitor, started 140400157239040)>']
[2025-11-30 07:07:32] 2025-11-30 12:07:27,933 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 07:07:32] 2025-11-30 12:07:27,934 | INFO     | [monitor] control thread has ended
[2025-11-30 07:07:32] 2025-11-30 12:07:32,486 | INFO     | all workflow threads have been joined
[2025-11-30 07:07:32] 2025-11-30 12:07:32,486 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 07:07:32] 2025-11-30 12:07:32,486 | INFO     | traces error code: 0
[2025-11-30 07:07:32] 2025-11-30 12:07:32,486 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 07:07:32] 2025-11-30 12:07:32,579 [wrapper] ==== pilot stdout END ====
[2025-11-30 07:07:32] 2025-11-30 12:07:32,582 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 07:07:32] 2025-11-30 12:07:32,584 [wrapper] pilotpid: 30437
[2025-11-30 07:07:32] 2025-11-30 12:07:32,587 [wrapper] Pilot exit status: 0
[2025-11-30 07:07:32] 2025-11-30 12:07:32,594 [wrapper] pandaids: 6892544861
[2025-11-30 07:07:32] 2025-11-30 12:07:32,621 [wrapper] cleanup supervisor_pilot  8278 30438
[2025-11-30 07:07:32] 2025-11-30 12:07:32,623 [wrapper] Test setup, not cleaning
[2025-11-30 07:07:32] 2025-11-30 12:07:32,626 [wrapper] apfmon messages muted
[2025-11-30 07:07:32] 2025-11-30 12:07:32,628 [wrapper] ==== wrapper stdout END ====
[2025-11-30 07:07:32] 2025-11-30 12:07:32,630 [wrapper] ==== wrapper stderr END ====
[2025-11-30 07:07:32]  *** Error codes and diagnostics ***
[2025-11-30 07:07:32]     "exeErrorCode": 0,
[2025-11-30 07:07:32]     "exeErrorDiag": "",
[2025-11-30 07:07:32]     "pilotErrorCode": 0,
[2025-11-30 07:07:32]     "pilotErrorDiag": "",
[2025-11-30 07:07:32]  *** Listing of results directory ***
[2025-11-30 07:07:32] total 1320360
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas    576529 Nov 19 03:11 pilot3.tar.gz
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas      5112 Nov 19 03:13 queuedata.json
[2025-11-30 07:07:32] -rwx------ 1 boincer umatlas     36292 Nov 19 03:14 runpilot2-wrapper.sh
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas       100 Nov 29 11:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 07:07:32] -rwxr-xr-x 1 boincer umatlas      7986 Nov 29 11:49 run_atlas
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas       105 Nov 29 11:49 job.xml
[2025-11-30 07:07:32] -rw-r--r-- 2 boincer umatlas 409984932 Nov 29 11:49 EVNT.47493027._000287.pool.root.1
[2025-11-30 07:07:32] -rw-r--r-- 2 boincer umatlas    590100 Nov 29 11:49 input.tar.gz
[2025-11-30 07:07:32] -rw-r--r-- 2 boincer umatlas     15120 Nov 29 11:49 start_atlas.sh
[2025-11-30 07:07:32] drwxrwx--x 2 boincer umatlas      4096 Nov 29 11:49 shared
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas         0 Nov 29 11:49 boinc_lockfile
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas      2773 Nov 29 11:49 pandaJob.out
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas    991834 Nov 29 11:49 agis_schedconf.cvmfs.json
[2025-11-30 07:07:32] drwx------ 5 boincer umatlas      4096 Nov 29 11:49 pilot3
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas       533 Nov 30 06:55 boinc_task_state.xml
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas      5954 Nov 30 07:01 init_data.xml
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas 914352646 Nov 30 07:06 HITS.47493029._002823.pool.root.1
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas      1063 Nov 30 07:06 memory_monitor_summary.json
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas        95 Nov 30 07:06 pilot_heartbeat.json
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas   1516240 Nov 30 07:06 agis_ddmendpoints.agis.ALL.json
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas   2300048 Nov 30 07:06 log.47493029._002823.job.log.tgz.1
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas      8676 Nov 30 07:06 heartbeat.json
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas      8192 Nov 30 07:07 boinc_mmap_file
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas        29 Nov 30 07:07 wrapper_checkpoint.txt
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas      4738 Nov 30 07:07 pilotlog.txt
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas   9595328 Nov 30 07:07 log.47493029._002823.job.log.1
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas       353 Nov 30 07:07 output.list
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas       620 Nov 30 07:07 runtime_log
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas  11919360 Nov 30 07:07 result.tar.gz
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas      8704 Nov 30 07:07 runtime_log.err
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas       668 Nov 30 07:07 h9aNDmPVsf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmp4FKDmtF0nDm.diag
[2025-11-30 07:07:32] -rw-r--r-- 1 boincer umatlas     21221 Nov 30 07:07 stderr.txt
[2025-11-30 07:07:32] HITS file was successfully produced:
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas 914352646 Nov 30 07:06 shared/HITS.pool.root.1
[2025-11-30 07:07:32]  *** Contents of shared directory: ***
[2025-11-30 07:07:32] total 1305544
[2025-11-30 07:07:32] -rw-r--r-- 2 boincer umatlas 409984932 Nov 29 11:49 ATLAS.root_0
[2025-11-30 07:07:32] -rw-r--r-- 2 boincer umatlas    590100 Nov 29 11:49 input.tar.gz
[2025-11-30 07:07:32] -rw-r--r-- 2 boincer umatlas     15120 Nov 29 11:49 start_atlas.sh
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas 914352646 Nov 30 07:06 HITS.pool.root.1
[2025-11-30 07:07:32] -rw------- 1 boincer umatlas  11919360 Nov 30 07:07 result.tar.gz
07:07:34 (26752): run_atlas exited; CPU time 537856.831356
07:07:34 (26752): called boinc_finish(0)

</stderr_txt>
]]>

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