Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:51:40 (19976): wrapper (7.7.26015): starting
14:51:40 (19976): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 14:51:40] Arguments: --nthreads 8
[2025-12-01 14:51:40] Threads: 8
[2025-12-01 14:51:40] Checking for CVMFS
[2025-12-01 14:51:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 14:51:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 14:51:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 14:51:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 14:51:42] 2.11.2.0 13500 292603 143048 153519 1 85 22711757 25165825 2504 130560 14 134613535 99.867 85681353 2857 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 14:51:42] CVMFS is ok
[2025-12-01 14:51:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 14:51:42] Checking for apptainer binary...
[2025-12-01 14:51:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 14:51:42] Running /usr/bin/apptainer --version
[2025-12-01 14:51:42] apptainer version 1.3.2-1.el7
[2025-12-01 14:51:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 14:51:53] cg-vwn363.simple-grid.lan
[2025-12-01 14:51:53] apptainer works
[2025-12-01 14:51:53] Set ATHENA_PROC_NUMBER=8
[2025-12-01 14:51:53] Set ATHENA_CORE_NUMBER=8
[2025-12-01 14:51:53] Starting ATLAS job with PandaID=6898686328
[2025-12-01 14:51:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 14:48:40]  *** The last 200 lines of the pilot log: ***
[2025-12-02 14:48:40] 2025-12-02 13:47:40,231 | INFO     | monitor loop #5788: job 0:6898686328 is in state 'finished'
[2025-12-02 14:48:40] 2025-12-02 13:47:40,231 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:48:40] 2025-12-02 13:47:41,305 | INFO     | time since job start (85901s) is within the limit (172800.0s)
[2025-12-02 14:48:40] 2025-12-02 13:47:42,737 | INFO     | monitor loop #5789: job 0:6898686328 is in state 'finished'
[2025-12-02 14:48:40] 2025-12-02 13:47:42,737 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:48:40] 2025-12-02 13:47:43,312 | INFO     | time since job start (85903s) is within the limit (172800.0s)
[2025-12-02 14:48:40] 2025-12-02 13:47:45,249 | INFO     | monitor loop #5790: job 0:6898686328 is in state 'finished'
[2025-12-02 14:48:40] 2025-12-02 13:47:45,249 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:48:40] 2025-12-02 13:47:45,319 | INFO     | time since job start (85905s) is within the limit (172800.0s)
[2025-12-02 14:48:40] 2025-12-02 13:47:46,480 | INFO     | PID=23793 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 14:48:40] 2025-12-02 13:47:46,480 | INFO     | .. there are 9 such processes running
[2025-12-02 14:48:40] 2025-12-02 13:47:47,481 | INFO     | time since job start (85907s) is within the limit (172800.0s)
[2025-12-02 14:48:40] 2025-12-02 13:47:47,758 | INFO     | monitor loop #5791: job 0:6898686328 is in state 'finished'
[2025-12-02 14:48:40] 2025-12-02 13:47:47,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:48:40] 2025-12-02 13:47:48,497 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 14:48:40] 2025-12-02 13:47:48,498 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-02 14:48:40] 2025-12-02 13:47:48,499 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6898686328/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 14:48:40] 2025-12-02 13:47:48,500 | INFO     | extracted standard info from prmon json
[2025-12-02 14:48:40] 2025-12-02 13:47:48,500 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 14:48:40] 2025-12-02 13:47:48,500 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 14:48:40] 2025-12-02 13:47:48,531 | INFO     | fitting pss+swap vs Time
[2025-12-02 14:48:40] 2025-12-02 13:47:48,533 | INFO     | sum of square deviations: 849048372985.105
[2025-12-02 14:48:40] 2025-12-02 13:47:48,592 | INFO     | sum of deviations: 3252883066040.2246
[2025-12-02 14:48:40] 2025-12-02 13:47:48,593 | INFO     | mean x: 1764640503.0922086
[2025-12-02 14:48:40] 2025-12-02 13:47:48,593 | INFO     | mean y: 2843592.1765546817
[2025-12-02 14:48:40] 2025-12-02 13:47:48,593 | INFO     | intersect: -6757865682.815541
[2025-12-02 14:48:40] 2025-12-02 13:47:48,595 | INFO     | chi2: 21.763846993496607
[2025-12-02 14:48:40] 2025-12-02 13:47:48,597 | INFO     | sum of square deviations: 839977906151.6187
[2025-12-02 14:48:40] 2025-12-02 13:47:48,675 | INFO     | sum of deviations: 3711272429487.885
[2025-12-02 14:48:40] 2025-12-02 13:47:48,676 | INFO     | mean x: 1764640350.5961263
[2025-12-02 14:48:40] 2025-12-02 13:47:48,676 | INFO     | mean y: 2851297.7919655666
[2025-12-02 14:48:40] 2025-12-02 13:47:48,676 | INFO     | intersect: -7793855059.80015
[2025-12-02 14:48:40] 2025-12-02 13:47:48,682 | INFO     | chi2: 18.64613895046771
[2025-12-02 14:48:40] 2025-12-02 13:47:48,682 | INFO     | current chi2=18.64613895046771 (change=14.325169828479863 %)
[2025-12-02 14:48:40] 2025-12-02 13:47:48,682 | INFO     | right removable region: 1393
[2025-12-02 14:48:40] 2025-12-02 13:47:48,684 | INFO     | sum of square deviations: 839976974071.6188
[2025-12-02 14:48:40] 2025-12-02 13:47:48,748 | INFO     | sum of deviations: 2648662148804.2373
[2025-12-02 14:48:40] 2025-12-02 13:47:48,748 | INFO     | mean x: 1764640655.5961263
[2025-12-02 14:48:40] 2025-12-02 13:47:48,749 | INFO     | mean y: 2853750.005738881
[2025-12-02 14:48:40] 2025-12-02 13:47:48,749 | INFO     | intersect: -5561509387.310499
[2025-12-02 14:48:40] 2025-12-02 13:47:48,751 | INFO     | chi2: 16.751174586473233
[2025-12-02 14:48:40] 2025-12-02 13:47:48,751 | INFO     | current chi2=16.751174586473233 (change=23.032106449384806 %)
[2025-12-02 14:48:40] 2025-12-02 13:47:48,751 | INFO     | left removable region: 10
[2025-12-02 14:48:40] 2025-12-02 13:47:48,753 | INFO     | sum of square deviations: 820248918765.7982
[2025-12-02 14:48:40] 2025-12-02 13:47:48,811 | INFO     | sum of deviations: 2702025951854.511
[2025-12-02 14:48:40] 2025-12-02 13:47:48,811 | INFO     | mean x: 1764640625.1048446
[2025-12-02 14:48:40] 2025-12-02 13:47:48,811 | INFO     | mean y: 2871845.7895878525
[2025-12-02 14:48:40] 2025-12-02 13:47:48,811 | INFO     | intersect: -5810125472.030067
[2025-12-02 14:48:40] 2025-12-02 13:47:48,813 | INFO     | chi2: 9.44989539607304
[2025-12-02 14:48:40] 2025-12-02 13:47:48,813 | INFO     | current memory leak: 3.29 B/s (using 1383 data points, chi2=9.45)
[2025-12-02 14:48:40] 2025-12-02 13:47:48,815 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-02 14:48:40] 2025-12-02 13:47:48,815 | INFO     | ..............................
[2025-12-02 14:48:40] 2025-12-02 13:47:48,815 | INFO     | . Timing measurements:
[2025-12-02 14:48:40] 2025-12-02 13:47:48,815 | INFO     | . get job = 0 s
[2025-12-02 14:48:40] 2025-12-02 13:47:48,815 | INFO     | . initial setup = 5 s
[2025-12-02 14:48:40] 2025-12-02 13:47:48,815 | INFO     | . payload setup = 155 s
[2025-12-02 14:48:40] 2025-12-02 13:47:48,815 | INFO     | . stage-in = 0 s
[2025-12-02 14:48:40] 2025-12-02 13:47:48,816 | INFO     | . payload execution = 85456 s
[2025-12-02 14:48:40] 2025-12-02 13:47:48,816 | INFO     | . stage-out = 5 s
[2025-12-02 14:48:40] 2025-12-02 13:47:48,816 | INFO     | . log creation = 2 s
[2025-12-02 14:48:40] 2025-12-02 13:47:48,816 | INFO     | ..............................
[2025-12-02 14:48:40] 2025-12-02 13:47:48,963 | INFO     | 
[2025-12-02 14:48:40] 2025-12-02 13:47:48,963 | INFO     | job summary report
[2025-12-02 14:48:40] 2025-12-02 13:47:48,963 | INFO     | --------------------------------------------------
[2025-12-02 14:48:40] 2025-12-02 13:47:48,963 | INFO     | PanDA job id: 6898686328
[2025-12-02 14:48:40] 2025-12-02 13:47:48,963 | INFO     | task id: 47556185
[2025-12-02 14:48:40] 2025-12-02 13:47:48,964 | INFO     | errors: (none)
[2025-12-02 14:48:40] 2025-12-02 13:47:48,964 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 14:48:40] 2025-12-02 13:47:48,964 | INFO     | pilot state: finished 
[2025-12-02 14:48:40] 2025-12-02 13:47:48,964 | INFO     | transexitcode: 0
[2025-12-02 14:48:40] 2025-12-02 13:47:48,964 | INFO     | exeerrorcode: 0
[2025-12-02 14:48:40] 2025-12-02 13:47:48,964 | INFO     | exeerrordiag: 
[2025-12-02 14:48:40] 2025-12-02 13:47:48,964 | INFO     | exitcode: 0
[2025-12-02 14:48:40] 2025-12-02 13:47:48,964 | INFO     | exitmsg: OK
[2025-12-02 14:48:40] 2025-12-02 13:47:48,964 | INFO     | cpuconsumptiontime: 319803 s
[2025-12-02 14:48:40] 2025-12-02 13:47:48,964 | INFO     | nevents: 1000
[2025-12-02 14:48:40] 2025-12-02 13:47:48,964 | INFO     | neventsw: 0
[2025-12-02 14:48:40] 2025-12-02 13:47:48,964 | INFO     | pid: 30451
[2025-12-02 14:48:40] 2025-12-02 13:47:48,965 | INFO     | pgrp: 30451
[2025-12-02 14:48:40] 2025-12-02 13:47:48,965 | INFO     | corecount: 8
[2025-12-02 14:48:40] 2025-12-02 13:47:48,965 | INFO     | event service: False
[2025-12-02 14:48:40] 2025-12-02 13:47:48,965 | INFO     | sizes: {0: 2284143, 1: 2284342, 12: 2284342, 23: 2284370, 33: 2284398, 44: 2284454, 55: 2284610, 66: 2284638, 76: 2284666, 87: 2284722, 90: 2285012, 98: 2285320, 8
[2025-12-02 14:48:40] 2025-12-02 13:47:48,965 | INFO     | --------------------------------------------------
[2025-12-02 14:48:40] 2025-12-02 13:47:48,965 | INFO     | 
[2025-12-02 14:48:40] 2025-12-02 13:47:48,965 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-02 14:48:40] 2025-12-02 13:47:49,357 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,357 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,357 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,357 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,357 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,357 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,358 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,358 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,358 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,358 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,358 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,358 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,358 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,358 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,358 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,358 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,358 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,359 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 14:48:40] 2025-12-02 13:47:49,359 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,359 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 14:48:40] 2025-12-02 13:47:49,359 | INFO     | job 6898686328 has completed (purged errors)
[2025-12-02 14:48:40] 2025-12-02 13:47:49,359 | INFO     | overall cleanup function is called
[2025-12-02 14:48:40] 2025-12-02 13:47:50,375 | INFO     | --- collectZombieJob: --- 10, [30451]
[2025-12-02 14:48:40] 2025-12-02 13:47:50,375 | INFO     | zombie collector waiting for pid 30451
[2025-12-02 14:48:40] 2025-12-02 13:47:50,375 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 14:48:40] 2025-12-02 13:47:50,375 | INFO     | collected zombie processes
[2025-12-02 14:48:40] 2025-12-02 13:47:50,375 | INFO     | will attempt to kill all subprocesses of pid=30451
[2025-12-02 14:48:40] 2025-12-02 13:47:50,498 | INFO     | process IDs to be killed: [30451] (in reverse order)
[2025-12-02 14:48:40] 2025-12-02 13:47:51,509 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 14:48:40] 2025-12-02 13:47:51,509 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 14:48:40] 2025-12-02 13:47:51,512 | INFO     | did not find any defunct processes belonging to 30451
[2025-12-02 14:48:40] 2025-12-02 13:47:51,515 | INFO     | did not find any defunct processes belonging to 30451
[2025-12-02 14:48:40] 2025-12-02 13:47:51,528 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 14:48:40] 2025-12-02 13:47:51,528 | INFO     | ready for new job
[2025-12-02 14:48:40] 2025-12-02 13:47:51,528 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 14:48:40] 2025-12-02 13:47:51,533 | INFO     | ***************************************
[2025-12-02 14:48:40] 2025-12-02 13:47:51,533 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 14:48:40] 2025-12-02 13:47:51,533 | INFO     | ***************************************
[2025-12-02 14:48:40] 2025-12-02 13:47:51,534 | INFO     | 
[2025-12-02 14:48:40] 2025-12-02 13:47:51,534 | INFO     | pilot is running in a VM
[2025-12-02 14:48:40] 2025-12-02 13:47:51,534 | INFO     | architecture information:
[2025-12-02 14:48:40] 2025-12-02 13:47:51,535 | INFO     | executing command: cat /etc/os-release
[2025-12-02 14:48:40] 2025-12-02 13:47:51,731 | INFO     | cat /etc/os-release:
[2025-12-02 14:48:40] NAME="CentOS Linux"
[2025-12-02 14:48:40] VERSION="7 (Core)"
[2025-12-02 14:48:40] ID="centos"
[2025-12-02 14:48:40] ID_LIKE="rhel fedora"
[2025-12-02 14:48:40] VERSION_ID="7"
[2025-12-02 14:48:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 14:48:40] ANSI_COLOR="0;31"
[2025-12-02 14:48:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 14:48:40] HOME_URL="https://www.centos.org/"
[2025-12-02 14:48:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 14:48:40] 
[2025-12-02 14:48:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 14:48:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 14:48:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 14:48:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 14:48:40] 
[2025-12-02 14:48:40] 2025-12-02 13:47:51,731 | INFO     | ***************************************
[2025-12-02 14:48:40] 2025-12-02 13:47:52,235 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-02 14:48:40] 2025-12-02 13:47:52,428 | INFO     | sufficient remaining disk space (489976496128 B)
[2025-12-02 14:48:40] 2025-12-02 13:47:52,429 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 14:48:40] 2025-12-02 13:47:52,429 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 14:48:40] 2025-12-02 13:47:52,429 | INFO     | update_server=False
[2025-12-02 14:48:40] 2025-12-02 13:47:52,429 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 14:48:40] 2025-12-02 13:47:52,675 | INFO     | all data control threads have been joined
[2025-12-02 14:48:40] 2025-12-02 13:47:52,801 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 14:48:40] 2025-12-02 13:47:52,801 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 14:48:40] 2025-12-02 13:47:52,801 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 14:48:40] 2025-12-02 13:47:52,802 | INFO     | will abort loop
[2025-12-02 14:48:40] 2025-12-02 13:47:53,012 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 14:48:40] 2025-12-02 13:47:53,034 | INFO     | all payload control threads have been joined
[2025-12-02 14:48:40] 2025-12-02 13:47:53,405 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 14:48:40] 2025-12-02 13:47:53,435 | INFO     | [job] retrieve thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:53,571 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:53,669 | INFO     | all job control threads have been joined
[2025-12-02 14:48:40] 2025-12-02 13:47:53,681 | INFO     | [data] control thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:53,806 | INFO     | [job] job monitor thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:53,975 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:53,983 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 14:48:40] 2025-12-02 13:47:54,041 | INFO     | [payload] failed_post thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:54,042 | INFO     | [payload] control thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:54,168 | INFO     | [payload] validate_post thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:54,182 | INFO     | [job] validate thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:54,479 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:54,500 | INFO     | [data] copytool_in thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:54,634 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:54,675 | INFO     | [job] control thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:54,989 | INFO     | [job] queue monitor thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:55,020 | INFO     | [data] copytool_out thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:47:57,414 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 14:48:40] 2025-12-02 13:48:20,679 | INFO     | PID=23793 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 14:48:40] 2025-12-02 13:48:20,680 | INFO     | .. there are 9 such processes running
[2025-12-02 14:48:40] 2025-12-02 13:48:20,680 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 14:48:40] 2025-12-02 13:48:20,680 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 14:48:40] 2025-12-02 13:48:20,680 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 14:48:40] 2025-12-02 13:48:29,461 | INFO     | [monitor] cgroup control has ended
[2025-12-02 14:48:40] 2025-12-02 13:48:31,163 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140186623235904)>', '<ExcThread(monitor, started 140186012854016)>']
[2025-12-02 14:48:40] 2025-12-02 13:48:31,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 14:48:40] 2025-12-02 13:48:31,746 | INFO     | [monitor] control thread has ended
[2025-12-02 14:48:40] 2025-12-02 13:48:36,189 | INFO     | all workflow threads have been joined
[2025-12-02 14:48:40] 2025-12-02 13:48:36,189 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 14:48:40] 2025-12-02 13:48:36,189 | INFO     | traces error code: 0
[2025-12-02 14:48:40] 2025-12-02 13:48:36,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 14:48:40] 2025-12-02 13:48:36,398 [wrapper] ==== pilot stdout END ====
[2025-12-02 14:48:40] 2025-12-02 13:48:36,480 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 14:48:40] 2025-12-02 13:48:36,555 [wrapper] pilotpid: 23793
[2025-12-02 14:48:40] 2025-12-02 13:48:36,658 [wrapper] Pilot exit status: 0
[2025-12-02 14:48:40] 2025-12-02 13:48:37,056 [wrapper] pandaids: 6898686328
[2025-12-02 14:48:40] 2025-12-02 13:48:37,876 [wrapper] cleanup supervisor_pilot 30932 23794
[2025-12-02 14:48:40] 2025-12-02 13:48:37,978 [wrapper] Test setup, not cleaning
[2025-12-02 14:48:40] 2025-12-02 13:48:38,071 [wrapper] apfmon messages muted
[2025-12-02 14:48:40] 2025-12-02 13:48:38,151 [wrapper] ==== wrapper stdout END ====
[2025-12-02 14:48:40] 2025-12-02 13:48:38,240 [wrapper] ==== wrapper stderr END ====
[2025-12-02 14:48:40]  *** Error codes and diagnostics ***
[2025-12-02 14:48:40]     "exeErrorCode": 0,
[2025-12-02 14:48:40]     "exeErrorDiag": "",
[2025-12-02 14:48:40]     "pilotErrorCode": 0,
[2025-12-02 14:48:40]     "pilotErrorDiag": "",
[2025-12-02 14:48:40]  *** Listing of results directory ***
[2025-12-02 14:48:40] total 1334924
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-12-02 14:48:40] -rwx------. 1 boinc boinc     36292 Nov 26 17:36 runpilot2-wrapper.sh
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc      5112 Nov 26 17:37 queuedata.json
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc       100 Dec  1 14:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 14:48:40] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 14:51 run_atlas
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc       105 Dec  1 14:51 job.xml
[2025-12-02 14:48:40] -rw-r--r--. 2 boinc boinc 410054068 Dec  1 14:51 EVNT.47483658._004292.pool.root.1
[2025-12-02 14:48:40] drwxrwx--x. 2 boinc boinc        68 Dec  1 14:51 shared
[2025-12-02 14:48:40] -rw-r--r--. 2 boinc boinc    590110 Dec  1 14:51 input.tar.gz
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc      6392 Dec  1 14:51 init_data.xml
[2025-12-02 14:48:40] -rw-r--r--. 2 boinc boinc     15847 Dec  1 14:51 start_atlas.sh
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc         0 Dec  1 14:51 boinc_lockfile
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc      2786 Dec  1 14:51 pandaJob.out
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc    992150 Dec  1 14:55 agis_schedconf.cvmfs.json
[2025-12-02 14:48:40] drwx------. 5 boinc boinc      4096 Dec  1 14:56 pilot3
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc       533 Dec  2 14:25 boinc_task_state.xml
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc 925128567 Dec  2 14:44 HITS.47556185._000557.pool.root.1
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc      1033 Dec  2 14:46 memory_monitor_summary.json
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc   1516240 Dec  2 14:46 agis_ddmendpoints.agis.ALL.json
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc   2479664 Dec  2 14:46 log.47556185._000557.job.log.tgz.1
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc        95 Dec  2 14:47 pilot_heartbeat.json
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc      8625 Dec  2 14:47 heartbeat.json
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc      8192 Dec  2 14:48 boinc_mmap_file
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc        29 Dec  2 14:48 wrapper_checkpoint.txt
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc      5070 Dec  2 14:48 pilotlog.txt
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc  11454677 Dec  2 14:48 log.47556185._000557.job.log.1
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc       353 Dec  2 14:48 output.list
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc       620 Dec  2 14:48 runtime_log
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc  13957120 Dec  2 14:48 result.tar.gz
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc      8817 Dec  2 14:48 runtime_log.err
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc       662 Dec  2 14:48 fKqMDmXgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmv8JKDm4MG9Vn.diag
[2025-12-02 14:48:40] -rw-r--r--. 1 boinc boinc     21490 Dec  2 14:48 stderr.txt
[2025-12-02 14:48:40] HITS file was successfully produced:
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc 925128567 Dec  2 14:44 shared/HITS.pool.root.1
[2025-12-02 14:48:40]  *** Contents of shared directory: ***
[2025-12-02 14:48:40] total 1318120
[2025-12-02 14:48:40] -rw-r--r--. 2 boinc boinc 410054068 Dec  1 14:51 ATLAS.root_0
[2025-12-02 14:48:40] -rw-r--r--. 2 boinc boinc    590110 Dec  1 14:51 input.tar.gz
[2025-12-02 14:48:40] -rw-r--r--. 2 boinc boinc     15847 Dec  1 14:51 start_atlas.sh
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc 925128567 Dec  2 14:44 HITS.pool.root.1
[2025-12-02 14:48:40] -rw-------. 1 boinc boinc  13957120 Dec  2 14:48 result.tar.gz
14:48:42 (19976): run_atlas exited; CPU time 320440.469488
14:48:42 (19976): called boinc_finish(0)

</stderr_txt>
]]>

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