Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:55:16 (922099): wrapper (7.7.26015): starting
12:55:16 (922099): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 12:55:16] Arguments: --nthreads 8
[2025-11-29 12:55:16] Threads: 8
[2025-11-29 12:55:16] Checking for CVMFS
[2025-11-29 12:55:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 12:55:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 12:55:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 12:55:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 12:55:20] 2.13.3.0 12388 34650 262844 153451 0 1070 25306780 32935936 33554 16776704 0 154040524 99.488 190249820 36540 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 12:55:20] CVMFS is ok
[2025-11-29 12:55:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 12:55:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 12:55:20] Further information can be found at the LHC@home message board.
[2025-11-29 12:55:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 12:55:20] Checking for apptainer binary...
[2025-11-29 12:55:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 12:55:20] Running /usr/bin/apptainer --version
[2025-11-29 12:55:20] apptainer version 1.4.4-1.el9
[2025-11-29 12:55:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 12:55:21] c7-4-31.aglt2.org
[2025-11-29 12:55:21] apptainer works
[2025-11-29 12:55:21] Set ATHENA_PROC_NUMBER=8
[2025-11-29 12:55:21] Set ATHENA_CORE_NUMBER=8
[2025-11-29 12:55:21] Starting ATLAS job with PandaID=6893860162
[2025-11-29 12:55:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:20:06 (922099): BOINC client no longer exists - exiting
01:20:06 (922099): timer handler: client dead, exiting
01:31:25 (553419): wrapper (7.7.26015): starting
01:31:25 (553419): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 01:31:25] Arguments: --nthreads 8
[2025-11-30 01:31:25] Threads: 8
[2025-11-30 01:31:25] This job has been restarted, cleaning up previous attempt
[2025-11-30 01:31:25] Checking for CVMFS
[2025-11-30 01:31:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 01:31:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 01:31:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 01:31:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 01:31:27] 2.13.3.0 12388 35406 221388 153471 3 153 17716895 32935937 22191 16776704 0 159499651 99.481 197592349 35881 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-30 01:31:27] CVMFS is ok
[2025-11-30 01:31:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 01:31:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 01:31:27] Further information can be found at the LHC@home message board.
[2025-11-30 01:31:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 01:31:27] Checking for apptainer binary...
[2025-11-30 01:31:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 01:31:27] Running /usr/bin/apptainer --version
[2025-11-30 01:31:27] apptainer version 1.4.4-1.el9
[2025-11-30 01:31:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 01:31:27] c7-4-31.aglt2.org
[2025-11-30 01:31:27] apptainer works
[2025-11-30 01:31:27] Set ATHENA_PROC_NUMBER=8
[2025-11-30 01:31:27] Set ATHENA_CORE_NUMBER=8
[2025-11-30 01:31:27] Starting ATLAS job with PandaID=6893860162
[2025-11-30 01:31:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:10:23 (904443): wrapper (7.7.26015): starting
03:10:23 (904443): wrapper: running run_atlas (--nthreads 9)
[2025-11-30 03:10:23] Arguments: --nthreads 9
[2025-11-30 03:10:23] Threads: 9
[2025-11-30 03:10:23] This job has been restarted, cleaning up previous attempt
[2025-11-30 03:10:24] Checking for CVMFS
[2025-11-30 03:10:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 03:10:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 03:10:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 03:10:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 03:10:25] 2.13.3.0 12388 35505 232944 153473 1 568 20928116 32935936 24342 16776704 0 160155803 99.480 198953337 35912 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-30 03:10:25] CVMFS is ok
[2025-11-30 03:10:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 03:10:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 03:10:25] Further information can be found at the LHC@home message board.
[2025-11-30 03:10:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 03:10:25] Checking for apptainer binary...
[2025-11-30 03:10:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 03:10:25] Running /usr/bin/apptainer --version
[2025-11-30 03:10:25] apptainer version 1.4.4-1.el9
[2025-11-30 03:10:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 03:10:26] c7-4-31.aglt2.org
[2025-11-30 03:10:26] apptainer works
[2025-11-30 03:10:26] Set ATHENA_PROC_NUMBER=9
[2025-11-30 03:10:26] Set ATHENA_CORE_NUMBER=9
[2025-11-30 03:10:26] Starting ATLAS job with PandaID=6893860162
[2025-11-30 03:10:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:02:37 (1453067): wrapper (7.7.26015): starting
06:02:37 (1453067): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 06:02:37] Arguments: --nthreads 8
[2025-11-30 06:02:37] Threads: 8
[2025-11-30 06:02:37] This job has been restarted, cleaning up previous attempt
[2025-11-30 06:02:38] Checking for CVMFS
[2025-11-30 06:02:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 06:02:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 06:02:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 06:02:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 06:02:39] 2.13.3.0 12388 35678 241976 153477 1 408 23901349 32935936 23987 16776704 0 161064778 99.479 199831650 35881 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-30 06:02:39] CVMFS is ok
[2025-11-30 06:02:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 06:02:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 06:02:39] Further information can be found at the LHC@home message board.
[2025-11-30 06:02:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 06:02:39] Checking for apptainer binary...
[2025-11-30 06:02:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 06:02:39] Running /usr/bin/apptainer --version
[2025-11-30 06:02:39] apptainer version 1.4.4-1.el9
[2025-11-30 06:02:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 06:02:39] c7-4-31.aglt2.org
[2025-11-30 06:02:39] apptainer works
[2025-11-30 06:02:39] Set ATHENA_PROC_NUMBER=8
[2025-11-30 06:02:39] Set ATHENA_CORE_NUMBER=8
[2025-11-30 06:02:39] Starting ATLAS job with PandaID=6893860162
[2025-11-30 06:02:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:31:23 (3882038): wrapper (7.7.26015): starting
14:31:23 (3882038): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 14:31:23] Arguments: --nthreads 8
[2025-11-30 14:31:23] Threads: 8
[2025-11-30 14:31:23] This job has been restarted, cleaning up previous attempt
[2025-11-30 14:31:23] Checking for CVMFS
[2025-11-30 14:31:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 14:31:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 14:31:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 14:31:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 14:31:23] 2.13.3.0 12388 36186 247176 153492 3 935 31225202 32935937 28178 16776704 0 165512877 99.476 209049204 36325 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-30 14:31:23] CVMFS is ok
[2025-11-30 14:31:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 14:31:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 14:31:23] Further information can be found at the LHC@home message board.
[2025-11-30 14:31:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 14:31:23] Checking for apptainer binary...
[2025-11-30 14:31:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 14:31:23] Running /usr/bin/apptainer --version
[2025-11-30 14:31:23] apptainer version 1.4.4-1.el9
[2025-11-30 14:31:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 14:31:23] c7-4-31.aglt2.org
[2025-11-30 14:31:23] apptainer works
[2025-11-30 14:31:23] Set ATHENA_PROC_NUMBER=8
[2025-11-30 14:31:23] Set ATHENA_CORE_NUMBER=8
[2025-11-30 14:31:23] Starting ATLAS job with PandaID=6893860162
[2025-11-30 14:31:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 23:20:33]  *** The last 200 lines of the pilot log: ***
[2025-12-01 23:20:33] 2025-12-02 04:19:15,230 | INFO     | .. there are 56 such processes running
[2025-12-01 23:20:33] 2025-12-02 04:19:15,934 | INFO     | monitor loop #5380: job 0:6893860162 is in state 'finished'
[2025-12-01 23:20:33] 2025-12-02 04:19:15,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 23:20:33] 2025-12-02 04:19:16,232 | INFO     | time since job start (118059s) is within the limit (172800.0s)
[2025-12-01 23:20:33] 2025-12-02 04:19:18,238 | INFO     | time since job start (118061s) is within the limit (172800.0s)
[2025-12-01 23:20:33] 2025-12-02 04:19:18,439 | INFO     | monitor loop #5381: job 0:6893860162 is in state 'finished'
[2025-12-01 23:20:33] 2025-12-02 04:19:18,440 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 23:20:33] 2025-12-02 04:19:20,244 | INFO     | time since job start (118063s) is within the limit (172800.0s)
[2025-12-01 23:20:33] 2025-12-02 04:19:20,950 | INFO     | monitor loop #5382: job 0:6893860162 is in state 'finished'
[2025-12-01 23:20:33] 2025-12-02 04:19:20,951 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 23:20:33] 2025-12-02 04:19:22,251 | INFO     | time since job start (118065s) is within the limit (172800.0s)
[2025-12-01 23:20:33] 2025-12-02 04:19:23,455 | INFO     | monitor loop #5383: job 0:6893860162 is in state 'finished'
[2025-12-01 23:20:33] 2025-12-02 04:19:23,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 23:20:33] 2025-12-02 04:19:24,258 | INFO     | time since job start (118067s) is within the limit (172800.0s)
[2025-12-01 23:20:33] 2025-12-02 04:19:25,668 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 23:20:33] 2025-12-02 04:19:25,677 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3032.6428854166675
[2025-12-01 23:20:33] 2025-12-02 04:19:25,735 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6893860162/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 23:20:33] 2025-12-02 04:19:25,758 | INFO     | extracted standard info from prmon json
[2025-12-01 23:20:33] 2025-12-02 04:19:25,758 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 23:20:33] 2025-12-02 04:19:25,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 23:20:33] 2025-12-02 04:19:25,902 | INFO     | fitting pss+swap vs Time
[2025-12-01 23:20:33] 2025-12-02 04:19:25,922 | INFO     | sum of square deviations: 2246671531352.0674
[2025-12-01 23:20:33] 2025-12-02 04:19:25,968 | INFO     | monitor loop #5384: job 0:6893860162 is in state 'finished'
[2025-12-01 23:20:33] 2025-12-02 04:19:25,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 23:20:33] 2025-12-02 04:19:26,282 | INFO     | time since job start (118069s) is within the limit (172800.0s)
[2025-12-01 23:20:33] 2025-12-02 04:19:26,310 | INFO     | sum of deviations: -762594228610.5789
[2025-12-01 23:20:33] 2025-12-02 04:19:26,310 | INFO     | mean x: 1764590115.8842378
[2025-12-01 23:20:33] 2025-12-02 04:19:26,310 | INFO     | mean y: 2942630.6134366924
[2025-12-01 23:20:33] 2025-12-02 04:19:26,315 | INFO     | intersect: 601902567.3277984
[2025-12-01 23:20:33] 2025-12-02 04:19:26,317 | INFO     | chi2: 37.104168294144884
[2025-12-01 23:20:33] 2025-12-02 04:19:26,319 | INFO     | sum of square deviations: 2229302280466.77
[2025-12-01 23:20:33] 2025-12-02 04:19:26,401 | INFO     | sum of deviations: 15230750190.747574
[2025-12-01 23:20:33] 2025-12-02 04:19:26,401 | INFO     | mean x: 1764589963.3891191
[2025-12-01 23:20:33] 2025-12-02 04:19:26,401 | INFO     | mean y: 2949459.197409326
[2025-12-01 23:20:33] 2025-12-02 04:19:26,401 | INFO     | intersect: -9106343.713200353
[2025-12-01 23:20:33] 2025-12-02 04:19:26,403 | INFO     | chi2: 32.58469849445875
[2025-12-01 23:20:33] 2025-12-02 04:19:26,403 | INFO     | current chi2=32.58469849445875 (change=12.180490784371838 %)
[2025-12-01 23:20:33] 2025-12-02 04:19:26,403 | INFO     | right removable region: 1929
[2025-12-01 23:20:33] 2025-12-02 04:19:26,405 | INFO     | sum of square deviations: 2229300292116.326
[2025-12-01 23:20:33] 2025-12-02 04:19:26,479 | INFO     | sum of deviations: -1256933656373.4907
[2025-12-01 23:20:33] 2025-12-02 04:19:26,479 | INFO     | mean x: 1764590268.388083
[2025-12-01 23:20:33] 2025-12-02 04:19:26,479 | INFO     | mean y: 2946967.152849741
[2025-12-01 23:20:33] 2025-12-02 04:19:26,479 | INFO     | intersect: 997865823.9303455
[2025-12-01 23:20:33] 2025-12-02 04:19:26,481 | INFO     | chi2: 35.142171364437026
[2025-12-01 23:20:33] 2025-12-02 04:19:26,481 | INFO     | current chi2=35.142171364437026 (change=5.287807327074531 %)
[2025-12-01 23:20:33] 2025-12-02 04:19:26,481 | INFO     | left removable region: 10
[2025-12-01 23:20:33] 2025-12-02 04:19:26,483 | INFO     | sum of square deviations: 2191401962692.3655
[2025-12-01 23:20:33] 2025-12-02 04:19:26,556 | INFO     | sum of deviations: -542842633260.15625
[2025-12-01 23:20:33] 2025-12-02 04:19:26,556 | INFO     | mean x: 1764590237.8963
[2025-12-01 23:20:33] 2025-12-02 04:19:26,556 | INFO     | mean y: 2956534.652423137
[2025-12-01 23:20:33] 2025-12-02 04:19:26,556 | INFO     | intersect: 440071599.6530584
[2025-12-01 23:20:33] 2025-12-02 04:19:26,558 | INFO     | chi2: 29.863762315683058
[2025-12-01 23:20:33] 2025-12-02 04:19:26,558 | INFO     | current memory leak: -0.25 B/s (using 1919 data points, chi2=29.86)
[2025-12-01 23:20:33] 2025-12-02 04:19:26,560 | INFO     | could have reported an average CPU frequency of 3114 MHz (68 samples)
[2025-12-01 23:20:33] 2025-12-02 04:19:26,560 | INFO     | ..............................
[2025-12-01 23:20:33] 2025-12-02 04:19:26,560 | INFO     | . Timing measurements:
[2025-12-01 23:20:33] 2025-12-02 04:19:26,560 | INFO     | . get job = 0 s
[2025-12-01 23:20:33] 2025-12-02 04:19:26,560 | INFO     | . initial setup = 2 s
[2025-12-01 23:20:33] 2025-12-02 04:19:26,560 | INFO     | . payload setup = 7 s
[2025-12-01 23:20:33] 2025-12-02 04:19:26,560 | INFO     | . stage-in = 0 s
[2025-12-01 23:20:33] 2025-12-02 04:19:26,560 | INFO     | . payload execution = 117982 s
[2025-12-01 23:20:33] 2025-12-02 04:19:26,560 | INFO     | . stage-out = 14 s
[2025-12-01 23:20:33] 2025-12-02 04:19:26,561 | INFO     | . log creation = 3 s
[2025-12-01 23:20:33] 2025-12-02 04:19:26,561 | INFO     | ..............................
[2025-12-01 23:20:33] 2025-12-02 04:19:26,705 | INFO     | 
[2025-12-01 23:20:33] 2025-12-02 04:19:26,707 | INFO     | job summary report
[2025-12-01 23:20:33] 2025-12-02 04:19:26,707 | INFO     | --------------------------------------------------
[2025-12-01 23:20:33] 2025-12-02 04:19:26,707 | INFO     | PanDA job id: 6893860162
[2025-12-01 23:20:33] 2025-12-02 04:19:26,707 | INFO     | task id: 47523449
[2025-12-01 23:20:33] 2025-12-02 04:19:26,707 | INFO     | errors: (none)
[2025-12-01 23:20:33] 2025-12-02 04:19:26,707 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 23:20:33] 2025-12-02 04:19:26,707 | INFO     | pilot state: finished 
[2025-12-01 23:20:33] 2025-12-02 04:19:26,707 | INFO     | transexitcode: 0
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | exeerrorcode: 0
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | exeerrordiag: 
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | exitcode: 0
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | exitmsg: OK
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | cpuconsumptiontime: 205050 s
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | nevents: 1000
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | neventsw: 0
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | pid: 3951517
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | pgrp: 3951517
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | corecount: 8
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | event service: False
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | sizes: {0: 2284093, 1: 2284292, 5: 2284554, 11: 2284610, 117994: 2360334, 117995: 2360333, 118012: 2369539, 118013: 2369595, 118054: 2369841}
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | --------------------------------------------------
[2025-12-01 23:20:33] 2025-12-02 04:19:26,708 | INFO     | 
[2025-12-01 23:20:33] 2025-12-02 04:19:26,709 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-12-01 23:20:33] 2025-12-02 04:19:26,913 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,913 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,913 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,913 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,913 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,914 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 23:20:33] 2025-12-02 04:19:26,915 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,915 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 23:20:33] 2025-12-02 04:19:26,915 | INFO     | job 6893860162 has completed (purged errors)
[2025-12-01 23:20:33] 2025-12-02 04:19:26,915 | INFO     | overall cleanup function is called
[2025-12-01 23:20:33] 2025-12-02 04:19:28,003 | INFO     | --- collectZombieJob: --- 10, [3951517]
[2025-12-01 23:20:33] 2025-12-02 04:19:28,004 | INFO     | zombie collector waiting for pid 3951517
[2025-12-01 23:20:33] 2025-12-02 04:19:28,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 23:20:33] 2025-12-02 04:19:28,004 | INFO     | collected zombie processes
[2025-12-01 23:20:33] 2025-12-02 04:19:28,004 | INFO     | will attempt to kill all subprocesses of pid=3951517
[2025-12-01 23:20:33] 2025-12-02 04:19:32,925 | INFO     | process IDs to be killed: [3951517] (in reverse order)
[2025-12-01 23:20:33] 2025-12-02 04:19:33,344 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 23:20:33] 2025-12-02 04:19:33,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 23:20:33] 2025-12-02 04:19:33,546 | INFO     | did not find any defunct processes belonging to 3951517
[2025-12-01 23:20:33] 2025-12-02 04:19:33,714 | INFO     | did not find any defunct processes belonging to 3951517
[2025-12-01 23:20:33] 2025-12-02 04:19:33,747 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 23:20:33] 2025-12-02 04:19:33,747 | INFO     | ready for new job
[2025-12-01 23:20:33] 2025-12-02 04:19:33,747 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 23:20:33] 2025-12-02 04:19:33,790 | INFO     | ***************************************
[2025-12-01 23:20:33] 2025-12-02 04:19:33,791 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 23:20:33] 2025-12-02 04:19:33,791 | INFO     | ***************************************
[2025-12-01 23:20:33] 2025-12-02 04:19:33,791 | INFO     | 
[2025-12-01 23:20:33] 2025-12-02 04:19:33,922 | INFO     | architecture information:
[2025-12-01 23:20:33] 2025-12-02 04:19:33,971 | INFO     | executing command: cat /etc/os-release
[2025-12-01 23:20:33] 2025-12-02 04:19:34,207 | INFO     | cat /etc/os-release:
[2025-12-01 23:20:33] NAME="CentOS Linux"
[2025-12-01 23:20:33] VERSION="7 (Core)"
[2025-12-01 23:20:33] ID="centos"
[2025-12-01 23:20:33] ID_LIKE="rhel fedora"
[2025-12-01 23:20:33] VERSION_ID="7"
[2025-12-01 23:20:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 23:20:33] ANSI_COLOR="0;31"
[2025-12-01 23:20:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 23:20:33] HOME_URL="https://www.centos.org/"
[2025-12-01 23:20:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 23:20:33] 
[2025-12-01 23:20:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 23:20:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 23:20:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 23:20:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 23:20:33] 
[2025-12-01 23:20:33] 2025-12-02 04:19:34,207 | INFO     | ***************************************
[2025-12-01 23:20:33] 2025-12-02 04:19:34,712 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-12-01 23:20:33] 2025-12-02 04:19:34,846 | INFO     | sufficient remaining disk space (63199772672 B)
[2025-12-01 23:20:33] 2025-12-02 04:19:34,846 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 23:20:33] 2025-12-02 04:19:34,846 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 23:20:33] 2025-12-02 04:19:34,846 | INFO     | update_server=False
[2025-12-01 23:20:33] 2025-12-02 04:19:34,847 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 23:20:33] 2025-12-02 04:19:34,854 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 23:20:33] 2025-12-02 04:19:34,855 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 23:20:33] 2025-12-02 04:19:34,855 | INFO     | aborting loop
[2025-12-01 23:20:33] 2025-12-02 04:19:35,870 | INFO     | [job] retrieve thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:35,870 | INFO     | [job] job monitor thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:35,916 | INFO     | all data control threads have been joined
[2025-12-01 23:20:33] 2025-12-02 04:19:35,920 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 23:20:33] 2025-12-02 04:19:36,024 | INFO     | all job control threads have been joined
[2025-12-01 23:20:33] 2025-12-02 04:19:36,116 | INFO     | all payload control threads have been joined
[2025-12-01 23:20:33] 2025-12-02 04:19:36,225 | INFO     | [payload] failed_post thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:36,252 | INFO     | [data] copytool_in thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:36,748 | INFO     | [payload] validate_post thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:36,912 | INFO     | [data] copytool_out thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:36,930 | INFO     | [job] queue monitor thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:36,933 | INFO     | [data] control thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:37,040 | INFO     | [job] control thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:37,133 | INFO     | [payload] control thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:37,256 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:37,318 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:37,326 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:37,338 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:37,370 | INFO     | [job] validate thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:19:37,589 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 23:20:33] 2025-12-02 04:19:41,618 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 23:20:33] 2025-12-02 04:20:09,856 | INFO     | PID=3905979 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 23:20:33] 2025-12-02 04:20:09,856 | INFO     | .. there are 56 such processes running
[2025-12-01 23:20:33] 2025-12-02 04:20:09,863 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 23:20:33] 2025-12-02 04:20:09,863 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 23:20:33] 2025-12-02 04:20:09,863 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 23:20:33] 2025-12-02 04:20:24,108 | INFO     | [monitor] cgroup control has ended
[2025-12-01 23:20:33] 2025-12-02 04:20:25,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140104089397056)>', '<ExcThread(monitor, started 140103234086656)>']
[2025-12-01 23:20:33] 2025-12-02 04:20:26,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 23:20:33] 2025-12-02 04:20:26,141 | INFO     | [monitor] control thread has ended
[2025-12-01 23:20:33] 2025-12-02 04:20:30,968 | INFO     | all workflow threads have been joined
[2025-12-01 23:20:33] 2025-12-02 04:20:30,969 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 23:20:33] 2025-12-02 04:20:30,974 | INFO     | traces error code: 0
[2025-12-01 23:20:33] 2025-12-02 04:20:30,975 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 23:20:33] 2025-12-02 04:20:31,857 [wrapper] ==== pilot stdout END ====
[2025-12-01 23:20:33] 2025-12-02 04:20:31,884 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 23:20:33] 2025-12-02 04:20:31,923 [wrapper] pilotpid: 3905979
[2025-12-01 23:20:33] 2025-12-02 04:20:31,941 [wrapper] Pilot exit status: 0
[2025-12-01 23:20:33] 2025-12-02 04:20:32,144 [wrapper] pandaids: 6893860162 6893860162 6893860162 6893860162 6893860162
[2025-12-01 23:20:33] 2025-12-02 04:20:32,433 [wrapper] cleanup supervisor_pilot  584908 3905982
[2025-12-01 23:20:33] 2025-12-02 04:20:32,445 [wrapper] Test setup, not cleaning
[2025-12-01 23:20:33] 2025-12-02 04:20:32,454 [wrapper] apfmon messages muted
[2025-12-01 23:20:33] 2025-12-02 04:20:32,483 [wrapper] ==== wrapper stdout END ====
[2025-12-01 23:20:33] 2025-12-02 04:20:32,498 [wrapper] ==== wrapper stderr END ====
[2025-12-01 23:20:33]  *** Error codes and diagnostics ***
[2025-12-01 23:20:33]     "exeErrorCode": 0,
[2025-12-01 23:20:33]     "exeErrorDiag": "",
[2025-12-01 23:20:33]     "pilotErrorCode": 0,
[2025-12-01 23:20:33]     "pilotErrorDiag": "",
[2025-12-01 23:20:33]  *** Listing of results directory ***
[2025-12-01 23:20:33] total 1734056
[2025-12-01 23:20:33] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 08:12 pilot3.tar.gz
[2025-12-01 23:20:33] -rwx------. 1 boincer umatlas     36292 Nov 20 08:39 runpilot2-wrapper.sh
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 08:39 queuedata.json
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas       100 Nov 29 12:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 23:20:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 12:55 run_atlas
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas       105 Nov 29 12:55 job.xml
[2025-12-01 23:20:33] -rw-r--r--. 3 boincer umatlas 409801138 Nov 29 12:55 EVNT.47493127._000546.pool.root.1
[2025-12-01 23:20:33] -rw-r--r--. 3 boincer umatlas 409801138 Nov 29 12:55 ATLAS.root_0
[2025-12-01 23:20:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 12:55 start_atlas.sh
[2025-12-01 23:20:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 12:55 shared
[2025-12-01 23:20:33] -rw-r--r--. 2 boincer umatlas    590097 Nov 29 12:55 input.tar.gz
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas         0 Nov 29 12:55 boinc_lockfile
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas      2785 Nov 30 14:31 pandaJob.out
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas        57 Nov 30 14:31 setup.sh.local
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas    993237 Nov 30 14:31 agis_schedconf.cvmfs.json
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas       534 Dec  1 21:46 boinc_task_state.xml
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas 921775758 Dec  1 23:14 HITS.47523449._005454.pool.root.1
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas      1072 Dec  1 23:18 memory_monitor_summary.json
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas   1516240 Dec  1 23:18 agis_ddmendpoints.agis.ALL.json
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas   2627417 Dec  1 23:18 log.47523449._005454.job.log.tgz.1
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas      8631 Dec  1 23:19 heartbeat.json
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas      6948 Dec  1 23:19 init_data.xml
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas        96 Dec  1 23:20 pilot_heartbeat.json
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas      8192 Dec  1 23:20 boinc_mmap_file
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas        30 Dec  1 23:20 wrapper_checkpoint.txt
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas      4824 Dec  1 23:20 pilotlog.txt
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas  12550946 Dec  1 23:20 log.47523449._005454.job.log.1
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas       353 Dec  1 23:20 output.list
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas       620 Dec  1 23:20 runtime_log
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas  15196160 Dec  1 23:20 result.tar.gz
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas      1168 Dec  1 23:20 yaRMDmE4Jg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjyHKDmZeU6fm.diag
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas      9424 Dec  1 23:20 runtime_log.err
[2025-12-01 23:20:33] -rw-r--r--. 1 boincer umatlas     30551 Dec  1 23:20 stderr.txt
[2025-12-01 23:20:33] HITS file was successfully produced:
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas 921775758 Dec  1 23:14 shared/HITS.pool.root.1
[2025-12-01 23:20:33]  *** Contents of shared directory: ***
[2025-12-01 23:20:33] total 1315816
[2025-12-01 23:20:33] -rw-r--r--. 3 boincer umatlas 409801138 Nov 29 12:55 ATLAS.root_0
[2025-12-01 23:20:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 12:55 start_atlas.sh
[2025-12-01 23:20:33] -rw-r--r--. 2 boincer umatlas    590097 Nov 29 12:55 input.tar.gz
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas 921775758 Dec  1 23:14 HITS.pool.root.1
[2025-12-01 23:20:33] -rw-------. 1 boincer umatlas  15196160 Dec  1 23:20 result.tar.gz
23:20:36 (3882038): run_atlas exited; CPU time 207796.624607
23:20:36 (3882038): called boinc_finish(0)

</stderr_txt>
]]>

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