Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-01 17:03:13 (2641161): vboxwrapper version 26210
2025-12-01 17:03:13 (2641161): BOINC client version: 8.2.4
2025-12-01 17:03:14 (2641161): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-12-01 17:03:14 (2641161): Successfully copied 'init_data.xml' to the shared directory.
2025-12-01 17:03:14 (2641161): Create VM. (boinc_9d6d8998849be372, slot#11)
2025-12-01 17:03:14 (2641161): Setting Memory Size for VM. (4800MB)
2025-12-01 17:03:14 (2641161): Setting CPU Count for VM. (8)
2025-12-01 17:03:14 (2641161): Setting Chipset Options for VM.
2025-12-01 17:03:14 (2641161): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-01 17:03:14 (2641161): Setting Boot Options for VM.
2025-12-01 17:03:15 (2641161): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-01 17:03:15 (2641161): Enabling VM Network Access.
2025-12-01 17:03:15 (2641161): Disabling USB Support for VM.
2025-12-01 17:03:15 (2641161): Disabling COM Port Support for VM.
2025-12-01 17:03:15 (2641161): Disabling LPT Port Support for VM.
2025-12-01 17:03:15 (2641161): Disabling Audio Support for VM.
2025-12-01 17:03:15 (2641161): Disabling Clipboard Support for VM.
2025-12-01 17:03:15 (2641161): Disabling Drag and Drop Support for VM.
2025-12-01 17:03:16 (2641161): Adding storage controller(s) to VM.
2025-12-01 17:03:16 (2641161): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-01 17:03:16 (2641161): Adding VirtualBox Guest Additions to VM.
2025-12-01 17:03:16 (2641161): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-01 17:03:16 (2641161): forwarding host port 38773 to guest port 80
2025-12-01 17:03:16 (2641161): Enabling remote desktop for VM.
2025-12-01 17:03:16 (2641161): Enabling shared directory for VM.
2025-12-01 17:03:17 (2641161): Starting VM using VBoxManage interface. (boinc_9d6d8998849be372, slot#11)
2025-12-01 17:03:18 (2641161): Successfully started VM. (PID = '2641708')
2025-12-01 17:03:18 (2641161): Reporting VM Process ID to BOINC.
2025-12-01 17:03:18 (2641161): Guest Log: BIOS: VirtualBox 7.0.20
2025-12-01 17:03:18 (2641161): Guest Log: CPUID EDX: 0x178bfbff
2025-12-01 17:03:18 (2641161): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-01 17:03:18 (2641161): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-01 17:03:18 (2641161): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-01 17:03:18 (2641161): Detected: Web Application Enabled (http://localhost:38773)
2025-12-01 17:03:18 (2641161): Detected: Remote Desktop Enabled (localhost:52021)
2025-12-01 17:03:18 (2641161): Preference change detected
2025-12-01 17:03:18 (2641161): Setting CPU throttle for VM. (100%)
2025-12-01 17:03:18 (2641161): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-01 17:03:20 (2641161): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-01 17:03:20 (2641161): Guest Log: BIOS: Booting from Hard Disk...
2025-12-01 17:03:23 (2641161): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-01 17:03:23 (2641161): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-01 17:03:23 (2641161): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-01 17:03:28 (2641161): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-01 17:03:28 (2641161): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-01 17:03:34 (2641161): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-01 17:03:34 (2641161): Guest Log: 00:00:00.000182 main     Log opened 2025-12-01T16:03:31.800367000Z
2025-12-01 17:03:34 (2641161): Guest Log: 00:00:00.000282 main     OS Product: Linux
2025-12-01 17:03:34 (2641161): Guest Log: 00:00:00.000300 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-01 17:03:34 (2641161): Guest Log: 00:00:00.000317 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-01 17:03:34 (2641161): Guest Log: 00:00:00.000331 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-01 17:03:34 (2641161): Guest Log: 00:00:00.000331 main     Process ID: 1368
2025-12-01 17:03:34 (2641161): Guest Log: 00:00:00.000332 main     Package type: LINUX_64BITS_GENERIC
2025-12-01 17:03:34 (2641161): Guest Log: 00:00:00.001124 main     5.2.32 r132073 started. Verbose level = 0
2025-12-01 17:03:34 (2641161): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-01 17:03:34 (2641161): Guest Log: [INFO] Mounting shared directory
2025-12-01 17:03:34 (2641161): Guest Log: [INFO] Checking for init_data.xml
2025-12-01 17:03:36 (2641161): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-01 17:03:36 (2641161): Guest Log: [INFO] Detected branch: prod
2025-12-01 17:03:36 (2641161): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-01 17:03:36 (2641161): Guest Log: Copying input files
2025-12-01 17:03:38 (2641161): Guest Log: Copied input files into RunAtlas.
2025-12-01 17:03:39 (2641161): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-01 17:03:39 (2641161): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-01 17:03:39 (2641161): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-01 17:03:39 (2641161): Guest Log: Further information can be found at the LHC@home message board.
2025-12-01 17:04:33 (2641161): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-01 17:04:33 (2641161): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-01 17:04:33 (2641161): Guest Log: 2.6.3.0 1645 0 30188 153523 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-12-01 17:04:33 (2641161): Guest Log: copied the webapp to /var/www
2025-12-01 17:04:33 (2641161): Guest Log: ATHENA_PROC_NUMBER=8
2025-12-01 17:04:33 (2641161): Guest Log: ATHENA_CORE_NUMBER=8
2025-12-01 17:04:34 (2641161): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-01 17:04:34 (2641161): Guest Log:  *** Starting ATLAS job. (PandaID=6893852556 taskID=47523449) ***
2025-12-01 18:27:24 (2641161): VM state change detected. (old = 'running', new = 'paused')
2025-12-01 22:45:29 (2641161): VM state change detected. (old = 'paused', new = 'running')
2025-12-01 22:45:37 (2641161): Guest Log: 01:24:01.073934 timesync vgsvcTimeSyncWorker: Radical host time change: 15 494 651 000 000ns (HostNow=1 764 625 537 550 000 000 ns HostLast=1 764 610 042 899 000 000 ns)
2025-12-01 22:45:47 (2641161): Guest Log: 01:24:11.083525 timesync vgsvcTimeSyncWorker: Radical guest time change: 15 494 710 274 000ns (GuestNow=1 764 625 547 571 785 000 ns GuestLast=1 764 610 052 861 511 000 ns fSetTimeLastLoop=true )
2025-12-01 23:00:25 (2641161): Status Report: Elapsed Time: '6000.000000'
2025-12-01 23:00:25 (2641161): Status Report: CPU Time: '42810.190000'
2025-12-01 23:05:13 (2641161): VM state change detected. (old = 'running', new = 'paused')
2025-12-02 02:29:00 (2641161): VM state change detected. (old = 'paused', new = 'running')
2025-12-02 02:29:05 (2641161): Guest Log: 01:43:41.280135 timesync vgsvcTimeSyncWorker: Radical host time change: 12 237 280 000 000ns (HostNow=1 764 638 945 079 000 000 ns HostLast=1 764 626 707 799 000 000 ns)
2025-12-02 02:29:15 (2641161): Guest Log: 01:43:51.281510 timesync vgsvcTimeSyncWorker: Radical guest time change: 12 237 312 705 000ns (GuestNow=1 764 638 955 080 548 000 ns GuestLast=1 764 626 717 767 843 000 ns fSetTimeLastLoop=true )
2025-12-02 04:03:15 (2641161): Status Report: Elapsed Time: '12000.000000'
2025-12-02 04:03:15 (2641161): Status Report: CPU Time: '86779.080000'
2025-12-02 05:42:16 (2641161): Status Report: Elapsed Time: '18000.000000'
2025-12-02 05:42:16 (2641161): Status Report: CPU Time: '130709.810000'
2025-12-02 07:21:18 (2641161): Status Report: Elapsed Time: '24000.000000'
2025-12-02 07:21:18 (2641161): Status Report: CPU Time: '174103.180000'
2025-12-02 08:09:32 (2641161): Guest Log:  *** Job finished ***
2025-12-02 08:09:32 (2641161): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:12,162 | INFO     | job.realtimelogging is not enabled
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:13,166 | INFO     | [payload] run_realtimelog thread has finished
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:23,550 | INFO     | [monitor] cgroup control has ended
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:24,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140199202543424)>', '<ExcThread(monitor, started 140198386063104)>']
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:24,639 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:24,639 | INFO     | [monitor] control thread has ended
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,576 | INFO     | all workflow threads have been joined
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,576 | INFO     | end of generic workflow (traces error code: 0)
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,576 | INFO     | traces error code: 0
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,576 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,716 [wrapper] ==== pilot stdout END ====
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,722 [wrapper] ==== wrapper stdout RESUME ====
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,727 [wrapper] pilotpid: 6080
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,732 [wrapper] Pilot exit status: 0
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,749 [wrapper] pandaids: 6893852556
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,779 [wrapper] cleanup supervisor_pilot  4523 6081
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,790 [wrapper] Test setup, not cleaning
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,794 [wrapper] apfmon messages muted
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,800 [wrapper] ==== wrapper stdout END ====
2025-12-02 08:09:32 (2641161): Guest Log: 2025-12-02 07:09:29,804 [wrapper] ==== wrapper stderr END ====
2025-12-02 08:09:32 (2641161): Guest Log:  *** Error codes and diagnostics ***
2025-12-02 08:09:32 (2641161): Guest Log:     "exeErrorCode": 0,
2025-12-02 08:09:32 (2641161): Guest Log:     "exeErrorDiag": "",
2025-12-02 08:09:32 (2641161): Guest Log:     "pilotErrorCode": 0,
2025-12-02 08:09:32 (2641161): Guest Log:     "pilotErrorDiag": "",
2025-12-02 08:09:32 (2641161): Guest Log:  *** Listing of results directory ***
2025-12-02 08:09:32 (2641161): Guest Log: total 914372
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 20 11:54 pilot3.tar.gz
2025-12-02 08:09:32 (2641161): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 20 12:03 runpilot2-wrapper.sh
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 20 12:03 queuedata.json
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 atlas atlas    590106 Dec  1 16:03 input.tar.gz
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 atlas atlas      8946 Dec  1 16:03 init_data.xml
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Dec  1 16:03 start_atlas.sh
2025-12-02 08:09:32 (2641161): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec  1 16:03 EVNT.47493127._000392.pool.root.1 -> /data/./ATLAS.root_0
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Dec  1 16:04 pandaJob.out
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas    992142 Dec  1 16:05 agis_schedconf.cvmfs.json
2025-12-02 08:09:32 (2641161): Guest Log: drwx------. 5 atlas atlas      4096 Dec  1 16:05 pilot3
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas        98 Dec  2 07:08 pilot_heartbeat.json
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas 921977151 Dec  2 07:08 HITS.47523449._003915.pool.root.1
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas      1039 Dec  2 07:08 memory_monitor_summary.json
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec  2 07:08 agis_ddmendpoints.agis.ALL.json
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas   1731898 Dec  2 07:08 log.47523449._003915.job.log.tgz.1
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas      8629 Dec  2 07:08 heartbeat.json
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas      4684 Dec  2 07:09 pilotlog.txt
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas   3516840 Dec  2 07:09 log.47523449._003915.job.log.1
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas       353 Dec  2 07:09 output.list
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec  2 07:09 runtime_log
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas   5263360 Dec  2 07:09 result.tar.gz
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 atlas atlas      8741 Dec  2 07:09 runtime_log.err
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas       657 Dec  2 07:09 kASNDmbYIg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFbGKDm253s4n.diag
2025-12-02 08:09:32 (2641161): Guest Log: Looking for outputfile HITS.47523449._003915.pool.root.1
2025-12-02 08:09:32 (2641161): Guest Log: HITS file was successfully produced
2025-12-02 08:09:32 (2641161): Guest Log: -rw-------. 1 atlas atlas 921977151 Dec  2 07:08 /home/atlas/RunAtlas/HITS.47523449._003915.pool.root.1
2025-12-02 08:09:32 (2641161): Guest Log: Successfully finished the ATLAS job!
2025-12-02 08:09:32 (2641161): Guest Log: Copying the results back to the shared directory!
2025-12-02 08:09:32 (2641161): Guest Log:  *** Contents of shared directory: ***
2025-12-02 08:09:32 (2641161): Guest Log: total 406444
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 root root 410306396 Dec  1 16:03 ATLAS.root_0
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 root root      8946 Dec  1 16:03 init_data.xml
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 root root    590106 Dec  1 16:03 input.tar.gz
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 root root   5263360 Dec  2 07:09 result.tar.gz
2025-12-02 08:09:32 (2641161): Guest Log: -rw-r--r--. 1 root root     15847 Dec  1 16:03 start_atlas.sh
2025-12-02 08:09:32 (2641161): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-02 08:09:32 (2641161): VM Completion File Detected.
2025-12-02 08:09:32 (2641161): Powering off VM.
2025-12-02 08:09:32 (2641161): Successfully stopped VM.
2025-12-02 08:09:32 (2641161): Deregistering VM. (boinc_9d6d8998849be372, slot#11)
2025-12-02 08:09:33 (2641161): Removing network bandwidth throttle group from VM.
2025-12-02 08:09:33 (2641161): Removing VM from VirtualBox.
2025-12-02 08:09:38 (2641161): called boinc_finish(0)

</stderr_txt>
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