Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:30:43 (2710499): wrapper (7.7.26015): starting
11:30:43 (2710499): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 11:30:43] Arguments: --nthreads 8
[2025-11-29 11:30:43] Threads: 8
[2025-11-29 11:30:43] Checking for CVMFS
[2025-11-29 11:30:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 11:30:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 11:30:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 11:30:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 11:30:45] 2.13.2.0 2325231 35193 130988 153449 3 323 34450023 40960000 30596 16776704 0 248866645 99.717 205105627 52701 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 11:30:45] CVMFS is ok
[2025-11-29 11:30:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 11:30:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 11:30:45] Further information can be found at the LHC@home message board.
[2025-11-29 11:30:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 11:30:45] Checking for apptainer binary...
[2025-11-29 11:30:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 11:30:45] Running /usr/bin/apptainer --version
[2025-11-29 11:30:45] apptainer version 1.4.4-1.el9
[2025-11-29 11:30:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 11:30:46] c-208-37.aglt2.org
[2025-11-29 11:30:46] apptainer works
[2025-11-29 11:30:46] Set ATHENA_PROC_NUMBER=8
[2025-11-29 11:30:46] Set ATHENA_CORE_NUMBER=8
[2025-11-29 11:30:46] Starting ATLAS job with PandaID=6893872788
[2025-11-29 11:30:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 20:43:21]  *** The last 200 lines of the pilot log: ***
[2025-11-29 20:43:22] 2025-11-30 01:42:33,277 | INFO     | time since job start (33038s) is within the limit (172800.0s)
[2025-11-29 20:43:22] 2025-11-30 01:42:35,174 | INFO     | monitor loop #2083: job 0:6893872788 is in state 'finished'
[2025-11-29 20:43:22] 2025-11-30 01:42:35,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 20:43:22] 2025-11-30 01:42:35,292 | INFO     | time since job start (33040s) is within the limit (172800.0s)
[2025-11-29 20:43:22] 2025-11-30 01:42:37,301 | INFO     | time since job start (33042s) is within the limit (172800.0s)
[2025-11-29 20:43:22] 2025-11-30 01:42:37,693 | INFO     | monitor loop #2084: job 0:6893872788 is in state 'finished'
[2025-11-29 20:43:22] 2025-11-30 01:42:37,694 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 20:43:22] 2025-11-30 01:42:39,308 | INFO     | time since job start (33044s) is within the limit (172800.0s)
[2025-11-29 20:43:22] 2025-11-30 01:42:40,203 | INFO     | monitor loop #2085: job 0:6893872788 is in state 'finished'
[2025-11-29 20:43:22] 2025-11-30 01:42:40,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 20:43:22] 2025-11-30 01:42:41,324 | INFO     | time since job start (33046s) is within the limit (172800.0s)
[2025-11-29 20:43:22] 2025-11-30 01:42:42,714 | INFO     | monitor loop #2086: job 0:6893872788 is in state 'finished'
[2025-11-29 20:43:22] 2025-11-30 01:42:42,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 20:43:22] 2025-11-30 01:42:43,625 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-29 20:43:22] 2025-11-30 01:42:43,629 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3725.010585937502
[2025-11-29 20:43:22] 2025-11-30 01:42:43,642 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893872788/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 20:43:22] 2025-11-30 01:42:43,643 | INFO     | extracted standard info from prmon json
[2025-11-29 20:43:22] 2025-11-30 01:42:43,643 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 20:43:22] 2025-11-30 01:42:43,643 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 20:43:22] 2025-11-30 01:42:43,647 | INFO     | fitting pss+swap vs Time
[2025-11-29 20:43:22] 2025-11-30 01:42:43,648 | INFO     | sum of square deviations: 48557051722.64569
[2025-11-29 20:43:22] 2025-11-30 01:42:43,651 | INFO     | sum of deviations: 619368743756.4419
[2025-11-29 20:43:22] 2025-11-30 01:42:43,651 | INFO     | mean x: 1764450467.2411873
[2025-11-29 20:43:22] 2025-11-30 01:42:43,651 | INFO     | mean y: 2691991.935064935
[2025-11-29 20:43:22] 2025-11-30 01:42:43,651 | INFO     | intersect: -22503729434.923676
[2025-11-29 20:43:22] 2025-11-30 01:42:43,663 | INFO     | chi2: 29.439988782826656
[2025-11-29 20:43:22] 2025-11-30 01:42:43,663 | INFO     | sum of square deviations: 47218796612.12723
[2025-11-29 20:43:22] 2025-11-30 01:42:43,679 | INFO     | sum of deviations: 775280669777.3799
[2025-11-29 20:43:22] 2025-11-30 01:42:43,680 | INFO     | mean x: 1764450314.7715356
[2025-11-29 20:43:22] 2025-11-30 01:42:43,680 | INFO     | mean y: 2709755.3146067415
[2025-11-29 20:43:22] 2025-11-30 01:42:43,680 | INFO     | intersect: -28967622399.94526
[2025-11-29 20:43:22] 2025-11-30 01:42:43,680 | INFO     | chi2: 26.398413409654047
[2025-11-29 20:43:22] 2025-11-30 01:42:43,680 | INFO     | current chi2=26.398413409654047 (change=10.331442024688757 %)
[2025-11-29 20:43:22] 2025-11-30 01:42:43,680 | INFO     | right removable region: 533
[2025-11-29 20:43:22] 2025-11-30 01:42:43,680 | INFO     | sum of square deviations: 47217730942.12723
[2025-11-29 20:43:22] 2025-11-30 01:42:43,699 | INFO     | sum of deviations: 402731707785.69714
[2025-11-29 20:43:22] 2025-11-30 01:42:43,699 | INFO     | mean x: 1764450619.7715356
[2025-11-29 20:43:22] 2025-11-30 01:42:43,699 | INFO     | mean y: 2716661.308988764
[2025-11-29 20:43:22] 2025-11-30 01:42:43,699 | INFO     | intersect: -15046719159.21095
[2025-11-29 20:43:22] 2025-11-30 01:42:43,707 | INFO     | chi2: 24.32190873535363
[2025-11-29 20:43:22] 2025-11-30 01:42:43,707 | INFO     | current chi2=24.32190873535363 (change=17.384789393868843 %)
[2025-11-29 20:43:22] 2025-11-30 01:42:43,708 | INFO     | left removable region: 10
[2025-11-29 20:43:22] 2025-11-30 01:42:43,708 | INFO     | sum of square deviations: 44359605193.41867
[2025-11-29 20:43:22] 2025-11-30 01:42:43,731 | INFO     | sum of deviations: 410361199983.80475
[2025-11-29 20:43:22] 2025-11-30 01:42:43,731 | INFO     | mean x: 1764450589.3403442
[2025-11-29 20:43:22] 2025-11-30 01:42:43,731 | INFO     | mean y: 2760551.4168260037
[2025-11-29 20:43:22] 2025-11-30 01:42:43,731 | INFO     | intersect: -16319793673.237528
[2025-11-29 20:43:22] 2025-11-30 01:42:43,731 | INFO     | chi2: 17.001282530327163
[2025-11-29 20:43:22] 2025-11-30 01:42:43,731 | INFO     | current memory leak: 9.25 B/s (using 523 data points, chi2=17.00)
[2025-11-29 20:43:22] 2025-11-30 01:42:43,732 | INFO     | could have reported an average CPU frequency of 3703 MHz (21 samples)
[2025-11-29 20:43:22] 2025-11-30 01:42:43,732 | INFO     | ..............................
[2025-11-29 20:43:22] 2025-11-30 01:42:43,732 | INFO     | . Timing measurements:
[2025-11-29 20:43:22] 2025-11-30 01:42:43,732 | INFO     | . get job = 0 s
[2025-11-29 20:43:22] 2025-11-30 01:42:43,732 | INFO     | . initial setup = 5 s
[2025-11-29 20:43:22] 2025-11-30 01:42:43,732 | INFO     | . payload setup = 45 s
[2025-11-29 20:43:22] 2025-11-30 01:42:43,732 | INFO     | . stage-in = 0 s
[2025-11-29 20:43:22] 2025-11-30 01:42:43,732 | INFO     | . payload execution = 32895 s
[2025-11-29 20:43:22] 2025-11-30 01:42:43,732 | INFO     | . stage-out = 7 s
[2025-11-29 20:43:22] 2025-11-30 01:42:43,732 | INFO     | . log creation = 2 s
[2025-11-29 20:43:22] 2025-11-30 01:42:43,732 | INFO     | ..............................
[2025-11-29 20:43:22] 2025-11-30 01:42:44,116 | INFO     | 
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | job summary report
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | --------------------------------------------------
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | PanDA job id: 6893872788
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | task id: 47523449
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | errors: (none)
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | pilot state: finished 
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | transexitcode: 0
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | exeerrorcode: 0
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | exeerrordiag: 
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | exitcode: 0
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | exitmsg: OK
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | cpuconsumptiontime: 138845 s
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | nevents: 1000
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | neventsw: 0
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | pid: 2733277
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | pgrp: 2733277
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | corecount: 8
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | event service: False
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | sizes: {0: 2283486, 1: 2284342, 2: 2284342, 13: 2284370, 23: 2284426, 34: 2284872, 32942: 2325563, 32950: 2334557, 32951: 2334613, 32984: 2334859}
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | --------------------------------------------------
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | 
[2025-11-29 20:43:22] 2025-11-30 01:42:44,135 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,298 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,299 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,299 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,299 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,299 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 20:43:22] 2025-11-30 01:42:44,299 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,299 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 20:43:22] 2025-11-30 01:42:44,299 | INFO     | job 6893872788 has completed (purged errors)
[2025-11-29 20:43:22] 2025-11-30 01:42:44,299 | INFO     | overall cleanup function is called
[2025-11-29 20:43:22] 2025-11-30 01:42:44,622 | INFO     | PID=2717639 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 20:43:22] 2025-11-30 01:42:44,622 | INFO     | .. there are 32 such processes running
[2025-11-29 20:43:22] 2025-11-30 01:42:45,363 | INFO     | --- collectZombieJob: --- 10, [2733277]
[2025-11-29 20:43:22] 2025-11-30 01:42:45,364 | INFO     | zombie collector waiting for pid 2733277
[2025-11-29 20:43:22] 2025-11-30 01:42:45,364 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 20:43:22] 2025-11-30 01:42:45,364 | INFO     | collected zombie processes
[2025-11-29 20:43:22] 2025-11-30 01:42:45,364 | INFO     | will attempt to kill all subprocesses of pid=2733277
[2025-11-29 20:43:22] 2025-11-30 01:42:46,518 | INFO     | process IDs to be killed: [2733277] (in reverse order)
[2025-11-29 20:43:22] 2025-11-30 01:42:47,035 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 20:43:22] 2025-11-30 01:42:47,035 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 20:43:22] 2025-11-30 01:42:47,057 | INFO     | did not find any defunct processes belonging to 2733277
[2025-11-29 20:43:22] 2025-11-30 01:42:47,076 | INFO     | did not find any defunct processes belonging to 2733277
[2025-11-29 20:43:22] 2025-11-30 01:42:47,080 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 20:43:22] 2025-11-30 01:42:47,081 | INFO     | ready for new job
[2025-11-29 20:43:22] 2025-11-30 01:42:47,081 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 20:43:22] 2025-11-30 01:42:47,084 | INFO     | ***************************************
[2025-11-29 20:43:22] 2025-11-30 01:42:47,084 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 20:43:22] 2025-11-30 01:42:47,084 | INFO     | ***************************************
[2025-11-29 20:43:22] 2025-11-30 01:42:47,084 | INFO     | 
[2025-11-29 20:43:22] 2025-11-30 01:42:47,096 | INFO     | architecture information:
[2025-11-29 20:43:22] 2025-11-30 01:42:47,101 | INFO     | executing command: cat /etc/os-release
[2025-11-29 20:43:22] 2025-11-30 01:42:47,136 | INFO     | cat /etc/os-release:
[2025-11-29 20:43:22] NAME="CentOS Linux"
[2025-11-29 20:43:22] VERSION="7 (Core)"
[2025-11-29 20:43:22] ID="centos"
[2025-11-29 20:43:22] ID_LIKE="rhel fedora"
[2025-11-29 20:43:22] VERSION_ID="7"
[2025-11-29 20:43:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 20:43:22] ANSI_COLOR="0;31"
[2025-11-29 20:43:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 20:43:22] HOME_URL="https://www.centos.org/"
[2025-11-29 20:43:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 20:43:22] 
[2025-11-29 20:43:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 20:43:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 20:43:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 20:43:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 20:43:22] 
[2025-11-29 20:43:22] 2025-11-30 01:42:47,136 | INFO     | ***************************************
[2025-11-29 20:43:22] 2025-11-30 01:42:47,642 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-29 20:43:22] 2025-11-30 01:42:47,704 | INFO     | sufficient remaining disk space (162951856128 B)
[2025-11-29 20:43:22] 2025-11-30 01:42:47,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 20:43:22] 2025-11-30 01:42:47,708 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 20:43:22] 2025-11-30 01:42:47,708 | INFO     | update_server=False
[2025-11-29 20:43:22] 2025-11-30 01:42:47,708 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 20:43:22] 2025-11-30 01:42:47,751 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-29 20:43:22] 2025-11-30 01:42:47,752 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-29 20:43:22] 2025-11-30 01:42:47,752 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 20:43:22] 2025-11-30 01:42:47,752 | INFO     | will abort loop
[2025-11-29 20:43:22] 2025-11-30 01:42:47,831 | INFO     | all job control threads have been joined
[2025-11-29 20:43:22] 2025-11-30 01:42:47,832 | INFO     | all payload control threads have been joined
[2025-11-29 20:43:22] 2025-11-30 01:42:48,158 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 20:43:22] 2025-11-30 01:42:48,390 | INFO     | all data control threads have been joined
[2025-11-29 20:43:22] 2025-11-30 01:42:48,473 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 20:43:22] 2025-11-30 01:42:48,714 | INFO     | [job] retrieve thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:48,758 | INFO     | [job] job monitor thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:48,841 | INFO     | [job] control thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:48,847 | INFO     | [payload] control thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:49,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 20:43:22] 2025-11-30 01:42:49,157 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:49,166 | INFO     | [job] validate thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:49,177 | INFO     | [data] copytool_in thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:49,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:49,260 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:49,396 | INFO     | [data] control thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:49,984 | INFO     | [payload] validate_post thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:49,985 | INFO     | [payload] failed_post thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:50,144 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:50,148 | INFO     | [job] queue monitor thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:50,171 | INFO     | [data] copytool_out thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:52,257 | INFO     | [monitor] cgroup control has ended
[2025-11-29 20:43:22] 2025-11-30 01:42:52,491 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 20:43:22] 2025-11-30 01:42:54,476 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239925049152)>', '<ExcThread(monitor, started 140239104358144)>']
[2025-11-29 20:43:22] 2025-11-30 01:42:59,505 | INFO     | all workflow threads have been joined
[2025-11-29 20:43:22] 2025-11-30 01:42:59,507 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 20:43:22] 2025-11-30 01:42:59,517 | INFO     | traces error code: 0
[2025-11-29 20:43:22] 2025-11-30 01:42:59,518 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 20:43:22] 2025-11-30 01:43:18,394 | INFO     | PID=2717639 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 20:43:22] 2025-11-30 01:43:18,397 | INFO     | .. there are 32 such processes running
[2025-11-29 20:43:22] 2025-11-30 01:43:18,398 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 20:43:22] 2025-11-30 01:43:18,398 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 20:43:22] 2025-11-30 01:43:18,398 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 20:43:22] 2025-11-30 01:43:18,398 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 20:43:22] 2025-11-30 01:43:18,398 | INFO     | [monitor] control thread has ended
[2025-11-29 20:43:22] 2025-11-30 01:43:20,281 [wrapper] ==== pilot stdout END ====
[2025-11-29 20:43:22] 2025-11-30 01:43:20,325 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 20:43:22] 2025-11-30 01:43:20,355 [wrapper] pilotpid: 2717639
[2025-11-29 20:43:22] 2025-11-30 01:43:20,367 [wrapper] Pilot exit status: 0
[2025-11-29 20:43:22] 2025-11-30 01:43:20,430 [wrapper] pandaids: 6893872788
[2025-11-29 20:43:22] 2025-11-30 01:43:20,779 [wrapper] cleanup supervisor_pilot  342518 2717640
[2025-11-29 20:43:22] 2025-11-30 01:43:20,785 [wrapper] Test setup, not cleaning
[2025-11-29 20:43:22] 2025-11-30 01:43:20,788 [wrapper] apfmon messages muted
[2025-11-29 20:43:22] 2025-11-30 01:43:20,790 [wrapper] ==== wrapper stdout END ====
[2025-11-29 20:43:22] 2025-11-30 01:43:20,792 [wrapper] ==== wrapper stderr END ====
[2025-11-29 20:43:22]  *** Error codes and diagnostics ***
[2025-11-29 20:43:22]     "exeErrorCode": 0,
[2025-11-29 20:43:22]     "exeErrorDiag": "",
[2025-11-29 20:43:22]     "pilotErrorCode": 0,
[2025-11-29 20:43:22]     "pilotErrorDiag": "",
[2025-11-29 20:43:22]  *** Listing of results directory ***
[2025-11-29 20:43:22] total 1311704
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 10:07 pilot3.tar.gz
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 10:20 queuedata.json
[2025-11-29 20:43:22] -rwx------. 1 boincer umatlas     36292 Nov 20 10:22 runpilot2-wrapper.sh
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas       100 Nov 29 11:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 20:43:22] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 11:30 run_atlas
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas       105 Nov 29 11:30 job.xml
[2025-11-29 20:43:22] -rw-r--r--. 2 boincer umatlas 409551915 Nov 29 11:30 EVNT.47493127._000684.pool.root.1
[2025-11-29 20:43:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 11:30 start_atlas.sh
[2025-11-29 20:43:22] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 11:30 shared
[2025-11-29 20:43:22] -rw-r--r--. 2 boincer umatlas    590102 Nov 29 11:30 input.tar.gz
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas         0 Nov 29 11:30 boinc_lockfile
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas      2785 Nov 29 11:30 pandaJob.out
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas        57 Nov 29 11:30 setup.sh.local
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas    991834 Nov 29 11:31 agis_schedconf.cvmfs.json
[2025-11-29 20:43:22] drwx------. 5 boincer umatlas      4096 Nov 29 11:31 pilot3
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas       532 Nov 29 20:19 boinc_task_state.xml
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas      7176 Nov 29 20:38 init_data.xml
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas 917482716 Nov 29 20:41 HITS.47523449._006838.pool.root.1
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas      1077 Nov 29 20:42 memory_monitor_summary.json
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas   1516240 Nov 29 20:42 agis_ddmendpoints.agis.ALL.json
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas   1801232 Nov 29 20:42 log.47523449._006838.job.log.tgz.1
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas      8647 Nov 29 20:42 heartbeat.json
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas       823 Nov 29 20:43 pilotlog.txt
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas        95 Nov 29 20:43 pilot_heartbeat.json
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas      8192 Nov 29 20:43 boinc_mmap_file
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas        29 Nov 29 20:43 wrapper_checkpoint.txt
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas   4315748 Nov 29 20:43 log.47523449._006838.job.log.1
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas       353 Nov 29 20:43 output.list
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas       620 Nov 29 20:43 runtime_log
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas   6133760 Nov 29 20:43 result.tar.gz
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas      9343 Nov 29 20:43 runtime_log.err
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas       666 Nov 29 20:43 O8dNDm5eLg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgCIKDmwIm2jm.diag
[2025-11-29 20:43:22] -rw-r--r--. 1 boincer umatlas     21856 Nov 29 20:43 stderr.txt
[2025-11-29 20:43:22] HITS file was successfully produced:
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas 917482716 Nov 29 20:41 shared/HITS.pool.root.1
[2025-11-29 20:43:22]  *** Contents of shared directory: ***
[2025-11-29 20:43:22] total 1302532
[2025-11-29 20:43:22] -rw-r--r--. 2 boincer umatlas 409551915 Nov 29 11:30 ATLAS.root_0
[2025-11-29 20:43:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 11:30 start_atlas.sh
[2025-11-29 20:43:22] -rw-r--r--. 2 boincer umatlas    590102 Nov 29 11:30 input.tar.gz
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas 917482716 Nov 29 20:41 HITS.pool.root.1
[2025-11-29 20:43:22] -rw-------. 1 boincer umatlas   6133760 Nov 29 20:43 result.tar.gz
20:43:24 (2710499): run_atlas exited; CPU time 139285.883386
20:43:24 (2710499): called boinc_finish(0)

</stderr_txt>
]]>

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