Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:04:18 (391196): wrapper (7.7.26015): starting
07:04:18 (391196): wrapper: running run_atlas (--nthreads 12)
[2025-11-30 07:04:18] Arguments: --nthreads 12
[2025-11-30 07:04:18] Threads: 12
[2025-11-30 07:04:18] Checking for CVMFS
[2025-11-30 07:04:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 07:04:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 07:04:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 07:04:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 07:04:19] 2.13.3.0 9777 12433 98344 153470 0 101 3505871 4097024 1037 130560 0 9364741 99.971 685163 15147 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-11-30 07:04:19] CVMFS is ok
[2025-11-30 07:04:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 07:04:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 07:04:19] Further information can be found at the LHC@home message board.
[2025-11-30 07:04:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 07:04:19] Checking for apptainer binary...
[2025-11-30 07:04:19] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-11-30 07:04:19] apptainer is not installed, using version from CVMFS
[2025-11-30 07:04:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 07:04:19] pckelar6.cern.ch
[2025-11-30 07:04:19] apptainer works
[2025-11-30 07:04:19] Set ATHENA_PROC_NUMBER=12
[2025-11-30 07:04:19] Set ATHENA_CORE_NUMBER=12
[2025-11-30 07:04:19] Starting ATLAS job with PandaID=6892546755
[2025-11-30 07:04:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 18:57:00]  *** The last 200 lines of the pilot log: ***
[2025-11-30 18:57:00] 2025-11-30 17:56:27,100 | INFO     | monitor loop #2999: job 0:6892546755 is in state 'finished'
[2025-11-30 18:57:00] 2025-11-30 17:56:27,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 18:57:00] 2025-11-30 17:56:28,161 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-30 18:57:00] 2025-11-30 17:56:28,167 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2816.6040833333336
[2025-11-30 18:57:00] 2025-11-30 17:56:28,173 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6892546755/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 18:57:00] 2025-11-30 17:56:28,174 | INFO     | extracted standard info from prmon json
[2025-11-30 18:57:00] 2025-11-30 17:56:28,174 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 18:57:00] 2025-11-30 17:56:28,174 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 18:57:00] 2025-11-30 17:56:28,195 | INFO     | fitting pss+swap vs Time
[2025-11-30 18:57:00] 2025-11-30 17:56:28,196 | INFO     | sum of square deviations: 106358156752.75879
[2025-11-30 18:57:00] 2025-11-30 17:56:28,213 | INFO     | sum of deviations: 1666541755782.1165
[2025-11-30 18:57:00] 2025-11-30 17:56:28,213 | INFO     | mean x: 1764504021.4814286
[2025-11-30 18:57:00] 2025-11-30 17:56:28,213 | INFO     | mean y: 3568658.2014285713
[2025-11-30 18:57:00] 2025-11-30 17:56:28,213 | INFO     | intersect: -27644706940.25651
[2025-11-30 18:57:00] 2025-11-30 17:56:28,215 | INFO     | chi2: 5.217218725046691
[2025-11-30 18:57:00] 2025-11-30 17:56:28,216 | INFO     | sum of square deviations: 104095495947.90742
[2025-11-30 18:57:00] 2025-11-30 17:56:28,232 | INFO     | sum of deviations: 1913397178226.9927
[2025-11-30 18:57:00] 2025-11-30 17:56:28,232 | INFO     | mean x: 1764503868.9884892
[2025-11-30 18:57:00] 2025-11-30 17:56:28,233 | INFO     | mean y: 3585281.4992805757
[2025-11-30 18:57:00] 2025-11-30 17:56:28,233 | INFO     | intersect: -32430063198.18844
[2025-11-30 18:57:00] 2025-11-30 17:56:28,234 | INFO     | chi2: 2.741438710206927
[2025-11-30 18:57:00] 2025-11-30 17:56:28,234 | INFO     | current chi2=2.741438710206927 (change=47.45401995423543 %)
[2025-11-30 18:57:00] 2025-11-30 17:56:28,235 | INFO     | sum of square deviations: 101865119180.47679
[2025-11-30 18:57:00] 2025-11-30 17:56:28,251 | INFO     | sum of deviations: 1943966727363.0872
[2025-11-30 18:57:00] 2025-11-30 17:56:28,251 | INFO     | mean x: 1764503716.4942029
[2025-11-30 18:57:00] 2025-11-30 17:56:28,251 | INFO     | mean y: 3587357.5217391304
[2025-11-30 18:57:00] 2025-11-30 17:56:28,252 | INFO     | intersect: -33669730288.099308
[2025-11-30 18:57:00] 2025-11-30 17:56:28,253 | INFO     | chi2: 2.5122544334936325
[2025-11-30 18:57:00] 2025-11-30 17:56:28,253 | INFO     | current chi2=2.5122544334936325 (change=8.360000019697521 %)
[2025-11-30 18:57:00] 2025-11-30 17:56:28,253 | INFO     | right removable region: 689
[2025-11-30 18:57:00] 2025-11-30 17:56:28,254 | INFO     | sum of square deviations: 104095119334.88339
[2025-11-30 18:57:00] 2025-11-30 17:56:28,271 | INFO     | sum of deviations: 1419718281346.0278
[2025-11-30 18:57:00] 2025-11-30 17:56:28,271 | INFO     | mean x: 1764504173.9870503
[2025-11-30 18:57:00] 2025-11-30 17:56:28,272 | INFO     | mean y: 3585264.4474820145
[2025-11-30 18:57:00] 2025-11-30 17:56:28,272 | INFO     | intersect: -24061893014.718117
[2025-11-30 18:57:00] 2025-11-30 17:56:28,273 | INFO     | chi2: 2.9232537065749504
[2025-11-30 18:57:00] 2025-11-30 17:56:28,273 | INFO     | current chi2=2.9232537065749504 (change=43.969117251284324 %)
[2025-11-30 18:57:00] 2025-11-30 17:56:28,274 | INFO     | sum of square deviations: 101864577932.38235
[2025-11-30 18:57:00] 2025-11-30 17:56:28,291 | INFO     | sum of deviations: 1350991004169.5837
[2025-11-30 18:57:00] 2025-11-30 17:56:28,291 | INFO     | mean x: 1764504326.4869566
[2025-11-30 18:57:00] 2025-11-30 17:56:28,291 | INFO     | mean y: 3589961.2869565217
[2025-11-30 18:57:00] 2025-11-30 17:56:28,291 | INFO     | intersect: -23398357214.93924
[2025-11-30 18:57:00] 2025-11-30 17:56:28,292 | INFO     | chi2: 2.8696191773040685
[2025-11-30 18:57:00] 2025-11-30 17:56:28,293 | INFO     | current chi2=2.8696191773040685 (change=1.8347545117362811 %)
[2025-11-30 18:57:00] 2025-11-30 17:56:28,293 | INFO     | left removable region: 20
[2025-11-30 18:57:00] 2025-11-30 17:56:28,294 | INFO     | sum of square deviations: 92844419870.0
[2025-11-30 18:57:00] 2025-11-30 17:56:28,309 | INFO     | sum of deviations: 1509128836389.9995
[2025-11-30 18:57:00] 2025-11-30 17:56:28,309 | INFO     | mean x: 1764504296.0
[2025-11-30 18:57:00] 2025-11-30 17:56:28,309 | INFO     | mean y: 3617163.183856502
[2025-11-30 18:57:00] 2025-11-30 17:56:28,310 | INFO     | intersect: -28677312921.318325
[2025-11-30 18:57:00] 2025-11-30 17:56:28,311 | INFO     | chi2: 0.10204868752415196
[2025-11-30 18:57:00] 2025-11-30 17:56:28,311 | INFO     | current memory leak: 16.25 B/s (using 669 data points, chi2=0.10)
[2025-11-30 18:57:00] 2025-11-30 17:56:28,313 | INFO     | could have reported an average CPU frequency of 2802 MHz (26 samples)
[2025-11-30 18:57:00] 2025-11-30 17:56:28,313 | INFO     | ..............................
[2025-11-30 18:57:00] 2025-11-30 17:56:28,313 | INFO     | . Timing measurements:
[2025-11-30 18:57:00] 2025-11-30 17:56:28,313 | INFO     | . get job = 0 s
[2025-11-30 18:57:00] 2025-11-30 17:56:28,313 | INFO     | . initial setup = 1 s
[2025-11-30 18:57:00] 2025-11-30 17:56:28,314 | INFO     | . payload setup = 8 s
[2025-11-30 18:57:00] 2025-11-30 17:56:28,314 | INFO     | . stage-in = 0 s
[2025-11-30 18:57:00] 2025-11-30 17:56:28,314 | INFO     | . payload execution = 42676 s
[2025-11-30 18:57:00] 2025-11-30 17:56:28,314 | INFO     | . stage-out = 2 s
[2025-11-30 18:57:00] 2025-11-30 17:56:28,314 | INFO     | . log creation = 0 s
[2025-11-30 18:57:00] 2025-11-30 17:56:28,314 | INFO     | ..............................
[2025-11-30 18:57:00] 2025-11-30 17:56:28,475 | INFO     | 
[2025-11-30 18:57:00] 2025-11-30 17:56:28,476 | INFO     | job summary report
[2025-11-30 18:57:00] 2025-11-30 17:56:28,476 | INFO     | --------------------------------------------------
[2025-11-30 18:57:00] 2025-11-30 17:56:28,476 | INFO     | PanDA job id: 6892546755
[2025-11-30 18:57:00] 2025-11-30 17:56:28,476 | INFO     | task id: 47493029
[2025-11-30 18:57:00] 2025-11-30 17:56:28,476 | INFO     | errors: (none)
[2025-11-30 18:57:00] 2025-11-30 17:56:28,476 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 18:57:00] 2025-11-30 17:56:28,477 | INFO     | pilot state: finished 
[2025-11-30 18:57:00] 2025-11-30 17:56:28,477 | INFO     | transexitcode: 0
[2025-11-30 18:57:00] 2025-11-30 17:56:28,477 | INFO     | exeerrorcode: 0
[2025-11-30 18:57:00] 2025-11-30 17:56:28,477 | INFO     | exeerrordiag: 
[2025-11-30 18:57:00] 2025-11-30 17:56:28,477 | INFO     | exitcode: 0
[2025-11-30 18:57:00] 2025-11-30 17:56:28,477 | INFO     | exitmsg: OK
[2025-11-30 18:57:00] 2025-11-30 17:56:28,478 | INFO     | cpuconsumptiontime: 496399 s
[2025-11-30 18:57:00] 2025-11-30 17:56:28,478 | INFO     | nevents: 1000
[2025-11-30 18:57:00] 2025-11-30 17:56:28,478 | INFO     | neventsw: 0
[2025-11-30 18:57:00] 2025-11-30 17:56:28,478 | INFO     | pid: 402714
[2025-11-30 18:57:00] 2025-11-30 17:56:28,478 | INFO     | pgrp: 402714
[2025-11-30 18:57:00] 2025-11-30 17:56:28,478 | INFO     | corecount: 12
[2025-11-30 18:57:00] 2025-11-30 17:56:28,479 | INFO     | event service: False
[2025-11-30 18:57:00] 2025-11-30 17:56:28,479 | INFO     | sizes: {0: 2284133, 1: 2284332, 6: 2284594, 12: 2284622, 42688: 2328421, 42689: 2328420, 42691: 2337598, 42692: 2337654, 42701: 2337900}
[2025-11-30 18:57:00] 2025-11-30 17:56:28,479 | INFO     | --------------------------------------------------
[2025-11-30 18:57:00] 2025-11-30 17:56:28,479 | INFO     | 
[2025-11-30 18:57:00] 2025-11-30 17:56:28,479 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-30 18:57:00] 2025-11-30 17:56:28,500 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,500 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,500 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,501 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,501 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,501 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,501 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,501 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,501 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,502 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,502 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,502 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,502 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,502 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,502 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,503 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,503 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,503 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 18:57:00] 2025-11-30 17:56:28,503 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,503 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 18:57:00] 2025-11-30 17:56:28,503 | INFO     | job 6892546755 has completed (purged errors)
[2025-11-30 18:57:00] 2025-11-30 17:56:28,504 | INFO     | overall cleanup function is called
[2025-11-30 18:57:00] 2025-11-30 17:56:29,527 | INFO     | --- collectZombieJob: --- 10, [402714]
[2025-11-30 18:57:00] 2025-11-30 17:56:29,527 | INFO     | zombie collector waiting for pid 402714
[2025-11-30 18:57:00] 2025-11-30 17:56:29,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 18:57:00] 2025-11-30 17:56:29,527 | INFO     | collected zombie processes
[2025-11-30 18:57:00] 2025-11-30 17:56:29,528 | INFO     | will attempt to kill all subprocesses of pid=402714
[2025-11-30 18:57:00] 2025-11-30 17:56:29,731 | INFO     | process IDs to be killed: [402714] (in reverse order)
[2025-11-30 18:57:00] 2025-11-30 17:56:29,795 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 18:57:00] 2025-11-30 17:56:29,796 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 18:57:00] 2025-11-30 17:56:29,802 | INFO     | did not find any defunct processes belonging to 402714
[2025-11-30 18:57:00] 2025-11-30 17:56:29,808 | INFO     | did not find any defunct processes belonging to 402714
[2025-11-30 18:57:00] 2025-11-30 17:56:29,810 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 18:57:00] 2025-11-30 17:56:29,810 | INFO     | ready for new job
[2025-11-30 18:57:00] 2025-11-30 17:56:29,810 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 18:57:00] 2025-11-30 17:56:29,812 | INFO     | ***************************************
[2025-11-30 18:57:00] 2025-11-30 17:56:29,813 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 18:57:00] 2025-11-30 17:56:29,813 | INFO     | ***************************************
[2025-11-30 18:57:00] 2025-11-30 17:56:29,813 | INFO     | 
[2025-11-30 18:57:00] 2025-11-30 17:56:29,814 | INFO     | architecture information:
[2025-11-30 18:57:00] 2025-11-30 17:56:29,815 | INFO     | executing command: cat /etc/os-release
[2025-11-30 18:57:00] 2025-11-30 17:56:29,827 | INFO     | cat /etc/os-release:
[2025-11-30 18:57:00] NAME="CentOS Linux"
[2025-11-30 18:57:00] VERSION="7 (Core)"
[2025-11-30 18:57:00] ID="centos"
[2025-11-30 18:57:00] ID_LIKE="rhel fedora"
[2025-11-30 18:57:00] VERSION_ID="7"
[2025-11-30 18:57:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 18:57:00] ANSI_COLOR="0;31"
[2025-11-30 18:57:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 18:57:00] HOME_URL="https://www.centos.org/"
[2025-11-30 18:57:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 18:57:00] 
[2025-11-30 18:57:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 18:57:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 18:57:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 18:57:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 18:57:00] 
[2025-11-30 18:57:00] 2025-11-30 17:56:29,827 | INFO     | ***************************************
[2025-11-30 18:57:00] 2025-11-30 17:56:30,330 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-30 18:57:00] 2025-11-30 17:56:30,347 | INFO     | sufficient remaining disk space (865509310464 B)
[2025-11-30 18:57:00] 2025-11-30 17:56:30,347 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 18:57:00] 2025-11-30 17:56:30,348 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 18:57:00] 2025-11-30 17:56:30,348 | INFO     | update_server=False
[2025-11-30 18:57:00] 2025-11-30 17:56:30,348 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 18:57:00] 2025-11-30 17:56:30,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 18:57:00] 2025-11-30 17:56:30,349 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 18:57:00] 2025-11-30 17:56:30,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 18:57:00] 2025-11-30 17:56:30,608 | INFO     | aborting loop
[2025-11-30 18:57:00] 2025-11-30 17:56:31,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 18:57:00] 2025-11-30 17:56:31,142 | INFO     | all payload control threads have been joined
[2025-11-30 18:57:00] 2025-11-30 17:56:31,243 | INFO     | all job control threads have been joined
[2025-11-30 18:57:00] 2025-11-30 17:56:31,309 | INFO     | all data control threads have been joined
[2025-11-30 18:57:00] 2025-11-30 17:56:31,353 | INFO     | [job] retrieve thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:31,355 | INFO     | [job] queue monitor thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:31,597 | INFO     | [payload] failed_post thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:31,613 | INFO     | [job] job monitor thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:31,694 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:31,694 | INFO     | [data] copytool_in thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:31,786 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:32,145 | INFO     | [payload] control thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:32,248 | INFO     | [job] control thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:32,314 | INFO     | [data] control thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:32,372 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:32,430 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:32,602 | INFO     | [job] validate thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:32,828 | INFO     | [payload] validate_post thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:33,058 | INFO     | [data] copytool_out thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:34,354 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 18:57:00] 2025-11-30 17:56:41,225 | INFO     | [monitor] cgroup control has ended
[2025-11-30 18:57:00] 2025-11-30 17:56:42,187 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139786084616000)>', '<ExcThread(monitor, started 139785406506752)>']
[2025-11-30 18:57:00] 2025-11-30 17:56:47,213 | INFO     | all workflow threads have been joined
[2025-11-30 18:57:00] 2025-11-30 17:56:47,213 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 18:57:00] 2025-11-30 17:56:47,214 | INFO     | traces error code: 0
[2025-11-30 18:57:00] 2025-11-30 17:56:47,214 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 18:57:00] 2025-11-30 17:57:00,145 | INFO     | PID=395052 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-30 18:57:00] 2025-11-30 17:57:00,145 | INFO     | .. there are 2 such processes running
[2025-11-30 18:57:00] 2025-11-30 17:57:00,146 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 18:57:00] 2025-11-30 17:57:00,146 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 18:57:00] 2025-11-30 17:57:00,147 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 18:57:00] 2025-11-30 17:57:00,147 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 18:57:00] 2025-11-30 17:57:00,147 | CRITICAL | thread 'MainThread' is not alive
[2025-11-30 18:57:00] 2025-11-30 17:57:00,147 | INFO     | [monitor] control thread has ended
[2025-11-30 18:57:00] 2025-11-30 17:57:00,256 [wrapper] ==== pilot stdout END ====
[2025-11-30 18:57:00] 2025-11-30 17:57:00,258 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 18:57:00] 2025-11-30 17:57:00,261 [wrapper] pilotpid: 395052
[2025-11-30 18:57:00] 2025-11-30 17:57:00,264 [wrapper] Pilot exit status: 0
[2025-11-30 18:57:00] 2025-11-30 17:57:00,274 [wrapper] pandaids: 6892546755
[2025-11-30 18:57:00] 2025-11-30 17:57:00,312 [wrapper] cleanup supervisor_pilot  646743 395053
[2025-11-30 18:57:00] 2025-11-30 17:57:00,315 [wrapper] Test setup, not cleaning
[2025-11-30 18:57:00] 2025-11-30 17:57:00,317 [wrapper] apfmon messages muted
[2025-11-30 18:57:00] 2025-11-30 17:57:00,320 [wrapper] ==== wrapper stdout END ====
[2025-11-30 18:57:00] 2025-11-30 17:57:00,322 [wrapper] ==== wrapper stderr END ====
[2025-11-30 18:57:00]  *** Error codes and diagnostics ***
[2025-11-30 18:57:00]     "exeErrorCode": 0,
[2025-11-30 18:57:00]     "exeErrorDiag": "",
[2025-11-30 18:57:00]     "pilotErrorCode": 0,
[2025-11-30 18:57:00]     "pilotErrorDiag": "",
[2025-11-30 18:57:00]  *** Listing of results directory ***
[2025-11-30 18:57:00] total 1309296
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc    576529 Nov 19 09:32 pilot3.tar.gz
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc      5112 Nov 19 09:33 queuedata.json
[2025-11-30 18:57:00] -rwx------. 1 boinc boinc     36292 Nov 19 09:33 runpilot2-wrapper.sh
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc       100 Nov 30 07:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 18:57:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 07:04 run_atlas
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc       105 Nov 30 07:04 job.xml
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc      6293 Nov 30 07:04 init_data.xml
[2025-11-30 18:57:00] -rw-r--r--. 2 boinc boinc 408740864 Nov 30 07:04 EVNT.47493027._000306.pool.root.1
[2025-11-30 18:57:00] -rw-r--r--. 2 boinc boinc     15120 Nov 30 07:04 start_atlas.sh
[2025-11-30 18:57:00] drwxrwx--x. 2 boinc boinc        68 Nov 30 07:04 shared
[2025-11-30 18:57:00] -rw-r--r--. 2 boinc boinc    590089 Nov 30 07:04 input.tar.gz
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc         0 Nov 30 07:04 boinc_lockfile
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc      2773 Nov 30 07:04 pandaJob.out
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc    991116 Nov 30 07:04 agis_schedconf.cvmfs.json
[2025-11-30 18:57:00] drwx------. 5 boinc boinc      4096 Nov 30 07:04 pilot3
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc       533 Nov 30 18:47 boinc_task_state.xml
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc 911465024 Nov 30 18:55 HITS.47493029._003012.pool.root.1
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc      1034 Nov 30 18:56 memory_monitor_summary.json
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc   1516240 Nov 30 18:56 agis_ddmendpoints.agis.ALL.json
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc   2405363 Nov 30 18:56 log.47493029._003012.job.log.tgz.1
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc      8612 Nov 30 18:56 heartbeat.json
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc      8192 Nov 30 18:56 boinc_mmap_file
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc        29 Nov 30 18:56 wrapper_checkpoint.txt
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc        95 Nov 30 18:57 pilot_heartbeat.json
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc       891 Nov 30 18:57 pilotlog.txt
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc   5901133 Nov 30 18:57 log.47493029._003012.job.log.1
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc       353 Nov 30 18:57 output.list
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc       620 Nov 30 18:57 runtime_log
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc   8325120 Nov 30 18:57 result.tar.gz
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc       665 Nov 30 18:57 rZYMDmXosf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmK2GKDmwxX7So.diag
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc      8728 Nov 30 18:57 runtime_log.err
[2025-11-30 18:57:00] -rw-r--r--. 1 boinc boinc     21416 Nov 30 18:57 stderr.txt
[2025-11-30 18:57:00] HITS file was successfully produced:
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc 911465024 Nov 30 18:55 shared/HITS.pool.root.1
[2025-11-30 18:57:00]  *** Contents of shared directory: ***
[2025-11-30 18:57:00] total 1297996
[2025-11-30 18:57:00] -rw-r--r--. 2 boinc boinc 408740864 Nov 30 07:04 ATLAS.root_0
[2025-11-30 18:57:00] -rw-r--r--. 2 boinc boinc     15120 Nov 30 07:04 start_atlas.sh
[2025-11-30 18:57:00] -rw-r--r--. 2 boinc boinc    590089 Nov 30 07:04 input.tar.gz
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc 911465024 Nov 30 18:55 HITS.pool.root.1
[2025-11-30 18:57:00] -rw-------. 1 boinc boinc   8325120 Nov 30 18:57 result.tar.gz
18:57:01 (391196): run_atlas exited; CPU time 496752.688577
18:57:01 (391196): called boinc_finish(0)

</stderr_txt>
]]>

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