Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:35:18 (13072): wrapper (7.7.26015): starting
09:35:18 (13072): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 09:35:18] Arguments: --nthreads 12
[2025-11-29 09:35:18] Threads: 12
[2025-11-29 09:35:18] Checking for CVMFS
[2025-11-29 09:35:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 09:35:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 09:35:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 09:35:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 09:35:19] 2.11.2.0 10903 10593 89792 153445 2 68 14977920 20275201 1 130560 0 4621254 99.834 1061528 41474 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 09:35:19] CVMFS is ok
[2025-11-29 09:35:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 09:35:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 09:35:19] Further information can be found at the LHC@home message board.
[2025-11-29 09:35:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 09:35:19] Checking for apptainer binary...
[2025-11-29 09:35:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 09:35:19] Running /usr/bin/apptainer --version
[2025-11-29 09:35:19] apptainer version 1.3.2-1.el7
[2025-11-29 09:35:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 09:35:20] c-205-22.aglt2.org
[2025-11-29 09:35:20] apptainer works
[2025-11-29 09:35:20] Set ATHENA_PROC_NUMBER=12
[2025-11-29 09:35:20] Set ATHENA_CORE_NUMBER=12
[2025-11-29 09:35:20] Starting ATLAS job with PandaID=6899106310
[2025-11-29 09:35:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 16:48:35]  *** The last 200 lines of the pilot log: ***
[2025-11-29 16:48:35] 2025-11-29 21:48:02,437 | INFO     | monitor loop #1948: job 0:6899106310 is in state 'finished'
[2025-11-29 16:48:35] 2025-11-29 21:48:02,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 16:48:35] 2025-11-29 21:48:03,233 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-29 16:48:35] 2025-11-29 21:48:03,237 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-11-29 16:48:35] 2025-11-29 21:48:03,239 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6899106310/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 16:48:35] 2025-11-29 21:48:03,240 | INFO     | extracted standard info from prmon json
[2025-11-29 16:48:35] 2025-11-29 21:48:03,241 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 16:48:35] 2025-11-29 21:48:03,241 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 16:48:35] 2025-11-29 21:48:03,249 | INFO     | fitting pss+swap vs Time
[2025-11-29 16:48:35] 2025-11-29 21:48:03,249 | INFO     | sum of square deviations: 23803507639.3505
[2025-11-29 16:48:35] 2025-11-29 21:48:03,253 | INFO     | sum of deviations: 409185669022.4092
[2025-11-29 16:48:35] 2025-11-29 21:48:03,253 | INFO     | mean x: 1764439897.1152942
[2025-11-29 16:48:35] 2025-11-29 21:48:03,254 | INFO     | mean y: 3424625.6447058823
[2025-11-29 16:48:35] 2025-11-29 21:48:03,254 | INFO     | intersect: -30327547207.994366
[2025-11-29 16:48:35] 2025-11-29 21:48:03,254 | INFO     | chi2: 5.400663311969474
[2025-11-29 16:48:35] 2025-11-29 21:48:03,255 | INFO     | sum of square deviations: 22973237249.283394
[2025-11-29 16:48:35] 2025-11-29 21:48:03,258 | INFO     | sum of deviations: 558189910489.1003
[2025-11-29 16:48:35] 2025-11-29 21:48:03,259 | INFO     | mean x: 1764439744.6166666
[2025-11-29 16:48:35] 2025-11-29 21:48:03,259 | INFO     | mean y: 3451963.5285714287
[2025-11-29 16:48:35] 2025-11-29 21:48:03,259 | INFO     | intersect: -42867844424.69421
[2025-11-29 16:48:35] 2025-11-29 21:48:03,259 | INFO     | chi2: 2.8325592709067857
[2025-11-29 16:48:35] 2025-11-29 21:48:03,260 | INFO     | current chi2=2.8325592709067857 (change=47.551641209904844 %)
[2025-11-29 16:48:35] 2025-11-29 21:48:03,260 | INFO     | sum of square deviations: 22162502109.214455
[2025-11-29 16:48:35] 2025-11-29 21:48:03,264 | INFO     | sum of deviations: 582522493017.3422
[2025-11-29 16:48:35] 2025-11-29 21:48:03,264 | INFO     | mean x: 1764439592.1180723
[2025-11-29 16:48:35] 2025-11-29 21:48:03,264 | INFO     | mean y: 3456506.7277108436
[2025-11-29 16:48:35] 2025-11-29 21:48:03,264 | INFO     | intersect: -46373335468.93034
[2025-11-29 16:48:35] 2025-11-29 21:48:03,265 | INFO     | chi2: 2.6112230905699465
[2025-11-29 16:48:35] 2025-11-29 21:48:03,265 | INFO     | current chi2=2.6112230905699465 (change=7.813999961454751 %)
[2025-11-29 16:48:35] 2025-11-29 21:48:03,265 | INFO     | right removable region: 414
[2025-11-29 16:48:35] 2025-11-29 21:48:03,265 | INFO     | sum of square deviations: 22973207359.28338
[2025-11-29 16:48:35] 2025-11-29 21:48:03,269 | INFO     | sum of deviations: 263325169124.24997
[2025-11-29 16:48:35] 2025-11-29 21:48:03,269 | INFO     | mean x: 1764440049.6166666
[2025-11-29 16:48:35] 2025-11-29 21:48:03,269 | INFO     | mean y: 3451341.8214285714
[2025-11-29 16:48:35] 2025-11-29 21:48:03,269 | INFO     | intersect: -20221041790.92162
[2025-11-29 16:48:35] 2025-11-29 21:48:03,270 | INFO     | chi2: 2.940381884567823
[2025-11-29 16:48:35] 2025-11-29 21:48:03,270 | INFO     | current chi2=2.940381884567823 (change=45.55517137957733 %)
[2025-11-29 16:48:35] 2025-11-29 21:48:03,271 | INFO     | sum of square deviations: 22162442329.21445
[2025-11-29 16:48:35] 2025-11-29 21:48:03,274 | INFO     | sum of deviations: 229252180782.26285
[2025-11-29 16:48:35] 2025-11-29 21:48:03,274 | INFO     | mean x: 1764440202.1180723
[2025-11-29 16:48:35] 2025-11-29 21:48:03,274 | INFO     | mean y: 3457744.178313253
[2025-11-29 16:48:35] 2025-11-29 21:48:03,275 | INFO     | intersect: -18248220396.107334
[2025-11-29 16:48:35] 2025-11-29 21:48:03,275 | INFO     | chi2: 2.8812379975574696
[2025-11-29 16:48:35] 2025-11-29 21:48:03,275 | INFO     | current chi2=2.8812379975574696 (change=2.0114355662698657 %)
[2025-11-29 16:48:35] 2025-11-29 21:48:03,275 | INFO     | left removable region: 20
[2025-11-29 16:48:35] 2025-11-29 21:48:03,276 | INFO     | sum of square deviations: 18965421316.893578
[2025-11-29 16:48:35] 2025-11-29 21:48:03,279 | INFO     | sum of deviations: 360428572928.5936
[2025-11-29 16:48:35] 2025-11-29 21:48:03,279 | INFO     | mean x: 1764440171.6192894
[2025-11-29 16:48:35] 2025-11-29 21:48:03,279 | INFO     | mean y: 3499041.263959391
[2025-11-29 16:48:35] 2025-11-29 21:48:03,279 | INFO     | intersect: -33528824994.59294
[2025-11-29 16:48:35] 2025-11-29 21:48:03,280 | INFO     | chi2: 0.04719702263225023
[2025-11-29 16:48:35] 2025-11-29 21:48:03,280 | INFO     | current memory leak: 19.00 B/s (using 394 data points, chi2=0.05)
[2025-11-29 16:48:35] 2025-11-29 21:48:03,280 | INFO     | could have reported an average CPU frequency of 2407 MHz (18 samples)
[2025-11-29 16:48:35] 2025-11-29 21:48:03,281 | INFO     | ..............................
[2025-11-29 16:48:35] 2025-11-29 21:48:03,281 | INFO     | . Timing measurements:
[2025-11-29 16:48:35] 2025-11-29 21:48:03,281 | INFO     | . get job = 0 s
[2025-11-29 16:48:35] 2025-11-29 21:48:03,281 | INFO     | . initial setup = 2 s
[2025-11-29 16:48:35] 2025-11-29 21:48:03,281 | INFO     | . payload setup = 7 s
[2025-11-29 16:48:35] 2025-11-29 21:48:03,281 | INFO     | . stage-in = 0 s
[2025-11-29 16:48:35] 2025-11-29 21:48:03,281 | INFO     | . payload execution = 25911 s
[2025-11-29 16:48:35] 2025-11-29 21:48:03,281 | INFO     | . stage-out = 3 s
[2025-11-29 16:48:35] 2025-11-29 21:48:03,282 | INFO     | . log creation = 0 s
[2025-11-29 16:48:35] 2025-11-29 21:48:03,282 | INFO     | ..............................
[2025-11-29 16:48:35] 2025-11-29 21:48:03,364 | INFO     | 
[2025-11-29 16:48:35] 2025-11-29 21:48:03,365 | INFO     | job summary report
[2025-11-29 16:48:35] 2025-11-29 21:48:03,365 | INFO     | --------------------------------------------------
[2025-11-29 16:48:35] 2025-11-29 21:48:03,365 | INFO     | PanDA job id: 6899106310
[2025-11-29 16:48:35] 2025-11-29 21:48:03,365 | INFO     | task id: 47556173
[2025-11-29 16:48:35] 2025-11-29 21:48:03,365 | INFO     | errors: (none)
[2025-11-29 16:48:35] 2025-11-29 21:48:03,365 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 16:48:35] 2025-11-29 21:48:03,366 | INFO     | pilot state: finished 
[2025-11-29 16:48:35] 2025-11-29 21:48:03,366 | INFO     | transexitcode: 0
[2025-11-29 16:48:35] 2025-11-29 21:48:03,366 | INFO     | exeerrorcode: 0
[2025-11-29 16:48:35] 2025-11-29 21:48:03,366 | INFO     | exeerrordiag: 
[2025-11-29 16:48:35] 2025-11-29 21:48:03,366 | INFO     | exitcode: 0
[2025-11-29 16:48:35] 2025-11-29 21:48:03,366 | INFO     | exitmsg: OK
[2025-11-29 16:48:35] 2025-11-29 21:48:03,367 | INFO     | cpuconsumptiontime: 297157 s
[2025-11-29 16:48:35] 2025-11-29 21:48:03,367 | INFO     | nevents: 1000
[2025-11-29 16:48:35] 2025-11-29 21:48:03,367 | INFO     | neventsw: 0
[2025-11-29 16:48:35] 2025-11-29 21:48:03,367 | INFO     | pid: 23145
[2025-11-29 16:48:35] 2025-11-29 21:48:03,367 | INFO     | pgrp: 23145
[2025-11-29 16:48:35] 2025-11-29 21:48:03,367 | INFO     | corecount: 12
[2025-11-29 16:48:35] 2025-11-29 21:48:03,367 | INFO     | event service: False
[2025-11-29 16:48:35] 2025-11-29 21:48:03,368 | INFO     | sizes: {0: 2284316, 5: 2284578, 11: 2284634, 25919: 2321927, 25923: 2330921, 25925: 2330977, 25931: 2331351}
[2025-11-29 16:48:35] 2025-11-29 21:48:03,368 | INFO     | --------------------------------------------------
[2025-11-29 16:48:35] 2025-11-29 21:48:03,368 | INFO     | 
[2025-11-29 16:48:35] 2025-11-29 21:48:03,368 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-29 16:48:35] 2025-11-29 21:48:03,393 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,393 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,393 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,393 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,393 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,394 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,394 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,394 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,394 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,395 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,395 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,395 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,396 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 16:48:35] 2025-11-29 21:48:03,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 16:48:35] 2025-11-29 21:48:03,396 | INFO     | job 6899106310 has completed (purged errors)
[2025-11-29 16:48:35] 2025-11-29 21:48:03,397 | INFO     | overall cleanup function is called
[2025-11-29 16:48:35] 2025-11-29 21:48:04,413 | INFO     | --- collectZombieJob: --- 10, [23145]
[2025-11-29 16:48:35] 2025-11-29 21:48:04,414 | INFO     | zombie collector waiting for pid 23145
[2025-11-29 16:48:35] 2025-11-29 21:48:04,414 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 16:48:35] 2025-11-29 21:48:04,414 | INFO     | collected zombie processes
[2025-11-29 16:48:35] 2025-11-29 21:48:04,414 | INFO     | will attempt to kill all subprocesses of pid=23145
[2025-11-29 16:48:35] 2025-11-29 21:48:04,503 | INFO     | process IDs to be killed: [23145] (in reverse order)
[2025-11-29 16:48:35] 2025-11-29 21:48:04,557 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 16:48:35] 2025-11-29 21:48:04,557 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 16:48:35] 2025-11-29 21:48:04,561 | INFO     | did not find any defunct processes belonging to 23145
[2025-11-29 16:48:35] 2025-11-29 21:48:04,564 | INFO     | did not find any defunct processes belonging to 23145
[2025-11-29 16:48:35] 2025-11-29 21:48:04,566 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 16:48:35] 2025-11-29 21:48:04,567 | INFO     | ready for new job
[2025-11-29 16:48:35] 2025-11-29 21:48:04,567 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 16:48:35] 2025-11-29 21:48:04,569 | INFO     | ***************************************
[2025-11-29 16:48:35] 2025-11-29 21:48:04,569 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 16:48:35] 2025-11-29 21:48:04,569 | INFO     | ***************************************
[2025-11-29 16:48:35] 2025-11-29 21:48:04,569 | INFO     | 
[2025-11-29 16:48:35] 2025-11-29 21:48:04,570 | INFO     | architecture information:
[2025-11-29 16:48:35] 2025-11-29 21:48:04,570 | INFO     | executing command: cat /etc/os-release
[2025-11-29 16:48:35] 2025-11-29 21:48:04,585 | INFO     | cat /etc/os-release:
[2025-11-29 16:48:35] NAME="CentOS Linux"
[2025-11-29 16:48:35] VERSION="7 (Core)"
[2025-11-29 16:48:35] ID="centos"
[2025-11-29 16:48:35] ID_LIKE="rhel fedora"
[2025-11-29 16:48:35] VERSION_ID="7"
[2025-11-29 16:48:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 16:48:35] ANSI_COLOR="0;31"
[2025-11-29 16:48:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 16:48:35] HOME_URL="https://www.centos.org/"
[2025-11-29 16:48:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 16:48:35] 
[2025-11-29 16:48:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 16:48:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 16:48:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 16:48:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 16:48:35] 
[2025-11-29 16:48:35] 2025-11-29 21:48:04,585 | INFO     | ***************************************
[2025-11-29 16:48:35] 2025-11-29 21:48:05,088 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-29 16:48:35] 2025-11-29 21:48:05,105 | INFO     | sufficient remaining disk space (28253880320 B)
[2025-11-29 16:48:35] 2025-11-29 21:48:05,106 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 16:48:35] 2025-11-29 21:48:05,106 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 16:48:35] 2025-11-29 21:48:05,106 | INFO     | update_server=False
[2025-11-29 16:48:35] 2025-11-29 21:48:05,106 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 16:48:35] 2025-11-29 21:48:05,106 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 16:48:35] 2025-11-29 21:48:05,188 | INFO     | all job control threads have been joined
[2025-11-29 16:48:35] 2025-11-29 21:48:05,423 | INFO     | all data control threads have been joined
[2025-11-29 16:48:35] 2025-11-29 21:48:05,838 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 16:48:35] 2025-11-29 21:48:05,943 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 16:48:35] 2025-11-29 21:48:05,943 | INFO     | aborting loop
[2025-11-29 16:48:35] 2025-11-29 21:48:06,111 | INFO     | [job] retrieve thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:06,112 | INFO     | [job] queue monitor thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:06,139 | INFO     | [job] validate thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:06,167 | INFO     | [payload] failed_post thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:06,193 | INFO     | [job] control thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:06,208 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:06,398 | INFO     | all payload control threads have been joined
[2025-11-29 16:48:35] 2025-11-29 21:48:06,427 | INFO     | [data] control thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:06,433 | INFO     | [payload] validate_post thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:06,790 | INFO     | [data] copytool_in thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:06,948 | INFO     | [job] job monitor thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:06,951 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:07,094 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 16:48:35] 2025-11-29 21:48:07,401 | INFO     | [payload] control thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:07,457 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:07,844 | INFO     | [data] copytool_out thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:11,100 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:15,715 | INFO     | job.realtimelogging is not enabled
[2025-11-29 16:48:35] 2025-11-29 21:48:16,720 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 16:48:35] 2025-11-29 21:48:17,564 | INFO     | [monitor] cgroup control has ended
[2025-11-29 16:48:35] 2025-11-29 21:48:19,554 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139627250734912)>', '<ExcThread(monitor, started 139626232674048)>']
[2025-11-29 16:48:35] 2025-11-29 21:48:24,562 | INFO     | all workflow threads have been joined
[2025-11-29 16:48:35] 2025-11-29 21:48:24,562 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 16:48:35] 2025-11-29 21:48:24,566 | INFO     | traces error code: 0
[2025-11-29 16:48:35] 2025-11-29 21:48:24,567 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 16:48:35] 2025-11-29 21:48:35,241 | INFO     | PID=16765 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 16:48:35] 2025-11-29 21:48:35,242 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 16:48:35] 2025-11-29 21:48:35,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 16:48:35] 2025-11-29 21:48:35,242 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 16:48:35] 2025-11-29 21:48:35,242 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 16:48:35] 2025-11-29 21:48:35,242 | CRITICAL | thread 'MainThread' is not alive
[2025-11-29 16:48:35] 2025-11-29 21:48:35,242 | INFO     | [monitor] control thread has ended
[2025-11-29 16:48:35] 2025-11-29 21:48:35,325 [wrapper] ==== pilot stdout END ====
[2025-11-29 16:48:35] 2025-11-29 21:48:35,329 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 16:48:35] 2025-11-29 21:48:35,333 [wrapper] pilotpid: 16765
[2025-11-29 16:48:35] 2025-11-29 21:48:35,337 [wrapper] Pilot exit status: 0
[2025-11-29 16:48:35] 2025-11-29 21:48:35,351 [wrapper] pandaids: 6899106310
[2025-11-29 16:48:35] 2025-11-29 21:48:35,390 [wrapper] cleanup supervisor_pilot 23588 16766
[2025-11-29 16:48:35] 2025-11-29 21:48:35,394 [wrapper] Test setup, not cleaning
[2025-11-29 16:48:35] 2025-11-29 21:48:35,398 [wrapper] apfmon messages muted
[2025-11-29 16:48:35] 2025-11-29 21:48:35,402 [wrapper] ==== wrapper stdout END ====
[2025-11-29 16:48:35] 2025-11-29 21:48:35,406 [wrapper] ==== wrapper stderr END ====
[2025-11-29 16:48:35]  *** Error codes and diagnostics ***
[2025-11-29 16:48:35]     "exeErrorCode": 0,
[2025-11-29 16:48:35]     "exeErrorDiag": "",
[2025-11-29 16:48:35]     "pilotErrorCode": 0,
[2025-11-29 16:48:35]     "pilotErrorDiag": "",
[2025-11-29 16:48:35]  *** Listing of results directory ***
[2025-11-29 16:48:35] total 1306252
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 20:09 pilot3.tar.gz
[2025-11-29 16:48:35] -rwx------ 1 boincer umatlas     36292 Nov 26 20:26 runpilot2-wrapper.sh
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 20:26 queuedata.json
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas       100 Nov 29 09:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 16:48:35] -rwxr-xr-x 1 boincer umatlas      7986 Nov 29 09:35 run_atlas
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas       105 Nov 29 09:35 job.xml
[2025-11-29 16:48:35] -rw-r--r-- 2 boincer umatlas 408292675 Nov 29 09:35 EVNT.47483658._003257.pool.root.1
[2025-11-29 16:48:35] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 09:35 start_atlas.sh
[2025-11-29 16:48:35] drwxrwx--x 2 boincer umatlas      4096 Nov 29 09:35 shared
[2025-11-29 16:48:35] -rw-r--r-- 2 boincer umatlas    590110 Nov 29 09:35 input.tar.gz
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas         0 Nov 29 09:35 boinc_lockfile
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas      2787 Nov 29 09:35 pandaJob.out
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas        57 Nov 29 09:35 setup.sh.local
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas    991826 Nov 29 09:35 agis_schedconf.cvmfs.json
[2025-11-29 16:48:35] drwx------ 5 boincer umatlas      4096 Nov 29 09:35 pilot3
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas       532 Nov 29 16:38 boinc_task_state.xml
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas      5956 Nov 29 16:45 init_data.xml
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas 913795337 Nov 29 16:47 HITS.47556173._002132.pool.root.1
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas      1064 Nov 29 16:47 memory_monitor_summary.json
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas   1516240 Nov 29 16:47 agis_ddmendpoints.agis.ALL.json
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas   2166908 Nov 29 16:47 log.47556173._002132.job.log.tgz.1
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas      8668 Nov 29 16:48 heartbeat.json
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas        29 Nov 29 16:48 wrapper_checkpoint.txt
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas      8192 Nov 29 16:48 boinc_mmap_file
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas       815 Nov 29 16:48 pilotlog.txt
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas        95 Nov 29 16:48 pilot_heartbeat.json
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas   3633136 Nov 29 16:48 log.47556173._002132.job.log.1
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas       353 Nov 29 16:48 output.list
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas       620 Nov 29 16:48 runtime_log
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas   5816320 Nov 29 16:48 result.tar.gz
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas      9345 Nov 29 16:48 runtime_log.err
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas       670 Nov 29 16:48 pHyNDmTxfi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSNKKDmToy22n.diag
[2025-11-29 16:48:35] -rw-r--r-- 1 boincer umatlas     21268 Nov 29 16:48 stderr.txt
[2025-11-29 16:48:35] HITS file was successfully produced:
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas 913795337 Nov 29 16:47 shared/HITS.pool.root.1
[2025-11-29 16:48:35]  *** Contents of shared directory: ***
[2025-11-29 16:48:35] total 1297388
[2025-11-29 16:48:35] -rw-r--r-- 2 boincer umatlas 408292675 Nov 29 09:35 ATLAS.root_0
[2025-11-29 16:48:35] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 09:35 start_atlas.sh
[2025-11-29 16:48:35] -rw-r--r-- 2 boincer umatlas    590110 Nov 29 09:35 input.tar.gz
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas 913795337 Nov 29 16:47 HITS.pool.root.1
[2025-11-29 16:48:35] -rw------- 1 boincer umatlas   5816320 Nov 29 16:48 result.tar.gz
16:48:37 (13072): run_atlas exited; CPU time 289484.281917
16:48:37 (13072): called boinc_finish(0)

</stderr_txt>
]]>

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