Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:16:00 (21446): wrapper (7.7.26015): starting
10:16:00 (21446): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 10:16:00] Arguments: --nthreads 12
[2025-11-29 10:16:00] Threads: 12
[2025-11-29 10:16:00] Checking for CVMFS
[2025-11-29 10:16:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 10:16:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 10:16:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 10:16:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 10:16:00] 2.11.2.0 2913 292170 98088 153447 3 1 15831422 20275200 1 130560 1 131916347 99.962 17658171 13941 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 10:16:00] CVMFS is ok
[2025-11-29 10:16:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 10:16:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 10:16:00] Further information can be found at the LHC@home message board.
[2025-11-29 10:16:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 10:16:00] Checking for apptainer binary...
[2025-11-29 10:16:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 10:16:00] Running /usr/bin/apptainer --version
[2025-11-29 10:16:00] apptainer version 1.3.2-1.el7
[2025-11-29 10:16:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 10:16:02] c-205-6.aglt2.org
[2025-11-29 10:16:02] apptainer works
[2025-11-29 10:16:02] Set ATHENA_PROC_NUMBER=12
[2025-11-29 10:16:02] Set ATHENA_CORE_NUMBER=12
[2025-11-29 10:16:02] Starting ATLAS job with PandaID=6897863912
[2025-11-29 10:16:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:11:46 (12979): wrapper (7.7.26015): starting
12:11:46 (12979): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 12:11:46] Arguments: --nthreads 12
[2025-11-29 12:11:46] Threads: 12
[2025-11-29 12:11:46] This job has been restarted, cleaning up previous attempt
[2025-11-29 12:11:46] Checking for CVMFS
[2025-11-29 12:11:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 12:11:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 12:11:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 12:11:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 12:11:46] 2.11.2.0 2913 292285 98176 153450 1 1 15969496 20275201 1 130560 1 132008337 99.962 17662229 13943 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 12:11:46] CVMFS is ok
[2025-11-29 12:11:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 12:11:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 12:11:46] Further information can be found at the LHC@home message board.
[2025-11-29 12:11:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 12:11:46] Checking for apptainer binary...
[2025-11-29 12:11:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 12:11:46] Running /usr/bin/apptainer --version
[2025-11-29 12:11:46] apptainer version 1.3.2-1.el7
[2025-11-29 12:11:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 12:11:48] c-205-6.aglt2.org
[2025-11-29 12:11:48] apptainer works
[2025-11-29 12:11:48] Set ATHENA_PROC_NUMBER=12
[2025-11-29 12:11:48] Set ATHENA_CORE_NUMBER=12
[2025-11-29 12:11:48] Starting ATLAS job with PandaID=6897863912
[2025-11-29 12:11:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 19:25:51]  *** The last 200 lines of the pilot log: ***
[2025-11-29 19:25:51] 2025-11-30 00:25:14,075 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-29 19:25:51] 2025-11-30 00:25:14,079 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-29 19:25:51] 2025-11-30 00:25:14,080 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897863912/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 19:25:51] 2025-11-30 00:25:14,081 | INFO     | extracted standard info from prmon json
[2025-11-29 19:25:51] 2025-11-30 00:25:14,081 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 19:25:51] 2025-11-30 00:25:14,081 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 19:25:51] 2025-11-30 00:25:14,088 | INFO     | fitting pss+swap vs Time
[2025-11-29 19:25:51] 2025-11-30 00:25:14,088 | INFO     | sum of square deviations: 23971947609.75805
[2025-11-29 19:25:51] 2025-11-30 00:25:14,092 | INFO     | sum of deviations: 384253650441.6412
[2025-11-29 19:25:51] 2025-11-30 00:25:14,092 | INFO     | mean x: 1764449313.7206573
[2025-11-29 19:25:51] 2025-11-30 00:25:14,092 | INFO     | mean y: 3410179.7112676054
[2025-11-29 19:25:51] 2025-11-30 00:25:14,093 | INFO     | intersect: -28279485346.909405
[2025-11-29 19:25:51] 2025-11-30 00:25:14,093 | INFO     | chi2: 6.859227085461058
[2025-11-29 19:25:51] 2025-11-30 00:25:14,094 | INFO     | sum of square deviations: 23137755987.011913
[2025-11-29 19:25:51] 2025-11-30 00:25:14,097 | INFO     | sum of deviations: 560325257769.5577
[2025-11-29 19:25:51] 2025-11-30 00:25:14,097 | INFO     | mean x: 1764449161.2232778
[2025-11-29 19:25:51] 2025-11-30 00:25:14,098 | INFO     | mean y: 3442340.494061758
[2025-11-29 19:25:51] 2025-11-30 00:25:14,098 | INFO     | intersect: -42726087335.53363
[2025-11-29 19:25:51] 2025-11-30 00:25:14,098 | INFO     | chi2: 3.3302757094201905
[2025-11-29 19:25:51] 2025-11-30 00:25:14,098 | INFO     | current chi2=3.3302757094201905 (change=51.44823654433161 %)
[2025-11-29 19:25:51] 2025-11-30 00:25:14,099 | INFO     | sum of square deviations: 22323146126.759686
[2025-11-29 19:25:51] 2025-11-30 00:25:14,103 | INFO     | sum of deviations: 624554229034.0623
[2025-11-29 19:25:51] 2025-11-30 00:25:14,103 | INFO     | mean x: 1764449008.7259614
[2025-11-29 19:25:51] 2025-11-30 00:25:14,103 | INFO     | mean y: 3454318.78125
[2025-11-29 19:25:51] 2025-11-30 00:25:14,103 | INFO     | intersect: -49362082423.09188
[2025-11-29 19:25:51] 2025-11-30 00:25:14,103 | INFO     | chi2: 2.593794862217748
[2025-11-29 19:25:51] 2025-11-30 00:25:14,103 | INFO     | current chi2=2.593794862217748 (change=22.114710956789395 %)
[2025-11-29 19:25:51] 2025-11-30 00:25:14,104 | INFO     | right removable region: 415
[2025-11-29 19:25:51] 2025-11-30 00:25:14,104 | INFO     | sum of square deviations: 23137698647.01192
[2025-11-29 19:25:51] 2025-11-30 00:25:14,108 | INFO     | sum of deviations: 241375065828.00696
[2025-11-29 19:25:51] 2025-11-30 00:25:14,108 | INFO     | mean x: 1764449466.2232778
[2025-11-29 19:25:51] 2025-11-30 00:25:14,108 | INFO     | mean y: 3436223.733966746
[2025-11-29 19:25:51] 2025-11-30 00:25:14,108 | INFO     | intersect: -18403498387.925728
[2025-11-29 19:25:51] 2025-11-30 00:25:14,109 | INFO     | chi2: 4.506168252780391
[2025-11-29 19:25:51] 2025-11-30 00:25:14,109 | INFO     | current chi2=4.506168252780391 (change=34.305014302096126 %)
[2025-11-29 19:25:51] 2025-11-30 00:25:14,109 | INFO     | sum of square deviations: 22323031446.75969
[2025-11-29 19:25:51] 2025-11-30 00:25:14,113 | INFO     | sum of deviations: 200602580806.49533
[2025-11-29 19:25:51] 2025-11-30 00:25:14,113 | INFO     | mean x: 1764449618.7259614
[2025-11-29 19:25:51] 2025-11-30 00:25:14,113 | INFO     | mean y: 3443849.574519231
[2025-11-29 19:25:51] 2025-11-30 00:25:14,113 | INFO     | intersect: -15852518547.98967
[2025-11-29 19:25:51] 2025-11-30 00:25:14,114 | INFO     | chi2: 4.411193334793074
[2025-11-29 19:25:51] 2025-11-30 00:25:14,114 | INFO     | current chi2=4.411193334793074 (change=2.107664708895759 %)
[2025-11-29 19:25:51] 2025-11-30 00:25:14,114 | INFO     | left removable region: 20
[2025-11-29 19:25:51] 2025-11-30 00:25:14,115 | INFO     | sum of square deviations: 19110238059.49355
[2025-11-29 19:25:51] 2025-11-30 00:25:14,118 | INFO     | sum of deviations: 380084739279.37946
[2025-11-29 19:25:51] 2025-11-30 00:25:14,118 | INFO     | mean x: 1764449588.227848
[2025-11-29 19:25:51] 2025-11-30 00:25:14,118 | INFO     | mean y: 3500945.729113924
[2025-11-29 19:25:51] 2025-11-30 00:25:14,118 | INFO     | intersect: -35089749050.70569
[2025-11-29 19:25:51] 2025-11-30 00:25:14,119 | INFO     | chi2: 0.05161096796410905
[2025-11-29 19:25:51] 2025-11-30 00:25:14,119 | INFO     | current memory leak: 19.89 B/s (using 395 data points, chi2=0.05)
[2025-11-29 19:25:51] 2025-11-30 00:25:14,119 | INFO     | monitor loop #1949: job 0:6897863912 is in state 'finished'
[2025-11-29 19:25:51] 2025-11-30 00:25:14,120 | INFO     | could have reported an average CPU frequency of 2397 MHz (18 samples)
[2025-11-29 19:25:51] 2025-11-30 00:25:14,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 19:25:51] 2025-11-30 00:25:14,120 | INFO     | ..............................
[2025-11-29 19:25:51] 2025-11-30 00:25:14,120 | INFO     | . Timing measurements:
[2025-11-29 19:25:51] 2025-11-30 00:25:14,120 | INFO     | . get job = 0 s
[2025-11-29 19:25:51] 2025-11-30 00:25:14,121 | INFO     | . initial setup = 1 s
[2025-11-29 19:25:51] 2025-11-30 00:25:14,121 | INFO     | . payload setup = 7 s
[2025-11-29 19:25:51] 2025-11-30 00:25:14,121 | INFO     | . stage-in = 0 s
[2025-11-29 19:25:51] 2025-11-30 00:25:14,121 | INFO     | . payload execution = 25954 s
[2025-11-29 19:25:51] 2025-11-30 00:25:14,121 | INFO     | . stage-out = 3 s
[2025-11-29 19:25:51] 2025-11-30 00:25:14,121 | INFO     | . log creation = 0 s
[2025-11-29 19:25:51] 2025-11-30 00:25:14,121 | INFO     | ..............................
[2025-11-29 19:25:51] 2025-11-30 00:25:14,381 | INFO     | 
[2025-11-29 19:25:51] 2025-11-30 00:25:14,381 | INFO     | job summary report
[2025-11-29 19:25:51] 2025-11-30 00:25:14,381 | INFO     | --------------------------------------------------
[2025-11-29 19:25:51] 2025-11-30 00:25:14,381 | INFO     | PanDA job id: 6897863912
[2025-11-29 19:25:51] 2025-11-30 00:25:14,381 | INFO     | task id: 47556173
[2025-11-29 19:25:51] 2025-11-30 00:25:14,381 | INFO     | errors: (none)
[2025-11-29 19:25:51] 2025-11-30 00:25:14,382 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 19:25:51] 2025-11-30 00:25:14,382 | INFO     | pilot state: finished 
[2025-11-29 19:25:51] 2025-11-30 00:25:14,382 | INFO     | transexitcode: 0
[2025-11-29 19:25:51] 2025-11-30 00:25:14,382 | INFO     | exeerrorcode: 0
[2025-11-29 19:25:51] 2025-11-30 00:25:14,382 | INFO     | exeerrordiag: 
[2025-11-29 19:25:51] 2025-11-30 00:25:14,382 | INFO     | exitcode: 0
[2025-11-29 19:25:51] 2025-11-30 00:25:14,383 | INFO     | exitmsg: OK
[2025-11-29 19:25:51] 2025-11-30 00:25:14,383 | INFO     | cpuconsumptiontime: 297486 s
[2025-11-29 19:25:51] 2025-11-30 00:25:14,383 | INFO     | nevents: 1000
[2025-11-29 19:25:51] 2025-11-30 00:25:14,383 | INFO     | neventsw: 0
[2025-11-29 19:25:51] 2025-11-30 00:25:14,383 | INFO     | pid: 23120
[2025-11-29 19:25:51] 2025-11-30 00:25:14,383 | INFO     | pgrp: 23120
[2025-11-29 19:25:51] 2025-11-30 00:25:14,384 | INFO     | corecount: 12
[2025-11-29 19:25:51] 2025-11-30 00:25:14,384 | INFO     | event service: False
[2025-11-29 19:25:51] 2025-11-30 00:25:14,384 | INFO     | sizes: {0: 2284092, 1: 2284291, 6: 2284553, 12: 2284581, 25966: 2321872, 25970: 2330866, 25971: 2331050, 25976: 2331296}
[2025-11-29 19:25:51] 2025-11-30 00:25:14,384 | INFO     | --------------------------------------------------
[2025-11-29 19:25:51] 2025-11-30 00:25:14,384 | INFO     | 
[2025-11-29 19:25:51] 2025-11-30 00:25:14,384 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-29 19:25:51] 2025-11-30 00:25:14,409 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,409 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,409 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,410 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,410 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,410 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,410 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,410 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,411 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,411 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,411 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,411 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,411 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,411 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,412 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,412 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,412 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 19:25:51] 2025-11-30 00:25:14,412 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,412 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 19:25:51] 2025-11-30 00:25:14,413 | INFO     | job 6897863912 has completed (purged errors)
[2025-11-29 19:25:51] 2025-11-30 00:25:14,413 | INFO     | overall cleanup function is called
[2025-11-29 19:25:51] 2025-11-30 00:25:15,429 | INFO     | --- collectZombieJob: --- 10, [23120]
[2025-11-29 19:25:51] 2025-11-30 00:25:15,430 | INFO     | zombie collector waiting for pid 23120
[2025-11-29 19:25:51] 2025-11-30 00:25:15,430 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 19:25:51] 2025-11-30 00:25:15,430 | INFO     | collected zombie processes
[2025-11-29 19:25:51] 2025-11-30 00:25:15,430 | INFO     | will attempt to kill all subprocesses of pid=23120
[2025-11-29 19:25:51] 2025-11-30 00:25:15,524 | INFO     | process IDs to be killed: [23120] (in reverse order)
[2025-11-29 19:25:51] 2025-11-30 00:25:15,577 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 19:25:51] 2025-11-30 00:25:15,577 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 19:25:51] 2025-11-30 00:25:15,581 | INFO     | did not find any defunct processes belonging to 23120
[2025-11-29 19:25:51] 2025-11-30 00:25:15,584 | INFO     | did not find any defunct processes belonging to 23120
[2025-11-29 19:25:51] 2025-11-30 00:25:15,586 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 19:25:51] 2025-11-30 00:25:15,587 | INFO     | ready for new job
[2025-11-29 19:25:51] 2025-11-30 00:25:15,587 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 19:25:51] 2025-11-30 00:25:15,590 | INFO     | ***************************************
[2025-11-29 19:25:51] 2025-11-30 00:25:15,590 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 19:25:51] 2025-11-30 00:25:15,590 | INFO     | ***************************************
[2025-11-29 19:25:51] 2025-11-30 00:25:15,590 | INFO     | 
[2025-11-29 19:25:51] 2025-11-30 00:25:15,591 | INFO     | architecture information:
[2025-11-29 19:25:51] 2025-11-30 00:25:15,592 | INFO     | executing command: cat /etc/os-release
[2025-11-29 19:25:51] 2025-11-30 00:25:15,607 | INFO     | cat /etc/os-release:
[2025-11-29 19:25:51] NAME="CentOS Linux"
[2025-11-29 19:25:51] VERSION="7 (Core)"
[2025-11-29 19:25:51] ID="centos"
[2025-11-29 19:25:51] ID_LIKE="rhel fedora"
[2025-11-29 19:25:51] VERSION_ID="7"
[2025-11-29 19:25:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 19:25:51] ANSI_COLOR="0;31"
[2025-11-29 19:25:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 19:25:51] HOME_URL="https://www.centos.org/"
[2025-11-29 19:25:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 19:25:51] 
[2025-11-29 19:25:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 19:25:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 19:25:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 19:25:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 19:25:51] 
[2025-11-29 19:25:51] 2025-11-30 00:25:15,607 | INFO     | ***************************************
[2025-11-29 19:25:51] 2025-11-30 00:25:16,110 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-29 19:25:51] 2025-11-30 00:25:16,127 | INFO     | sufficient remaining disk space (28237103104 B)
[2025-11-29 19:25:51] 2025-11-30 00:25:16,127 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 19:25:51] 2025-11-30 00:25:16,128 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 19:25:51] 2025-11-30 00:25:16,128 | INFO     | update_server=False
[2025-11-29 19:25:51] 2025-11-30 00:25:16,128 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 19:25:51] 2025-11-30 00:25:16,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 19:25:51] 2025-11-30 00:25:16,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 19:25:51] 2025-11-30 00:25:16,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 19:25:51] 2025-11-30 00:25:16,182 | INFO     | all data control threads have been joined
[2025-11-29 19:25:51] 2025-11-30 00:25:16,623 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-29 19:25:51] 2025-11-30 00:25:16,624 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-29 19:25:51] 2025-11-30 00:25:16,624 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 19:25:51] 2025-11-30 00:25:16,624 | INFO     | will abort loop
[2025-11-29 19:25:51] 2025-11-30 00:25:17,080 | INFO     | all job control threads have been joined
[2025-11-29 19:25:51] 2025-11-30 00:25:17,131 | INFO     | [job] retrieve thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:17,135 | INFO     | [job] queue monitor thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:17,187 | INFO     | [data] control thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:17,426 | INFO     | all payload control threads have been joined
[2025-11-29 19:25:51] 2025-11-30 00:25:17,629 | INFO     | [job] job monitor thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:17,645 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:17,704 | INFO     | [payload] failed_post thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:17,740 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:17,761 | INFO     | [payload] validate_post thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:17,850 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:17,930 | INFO     | [data] copytool_in thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:18,085 | INFO     | [job] control thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:18,134 | INFO     | [data] copytool_out thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:18,370 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:18,431 | INFO     | [payload] control thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:18,617 | INFO     | [job] validate thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:20,135 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 19:25:51] 2025-11-30 00:25:44,194 | INFO     | [monitor] cgroup control has ended
[2025-11-29 19:25:51] 2025-11-30 00:25:45,814 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139993768093504)>', '<ExcThread(monitor, started 139992965830400)>']
[2025-11-29 19:25:51] 2025-11-30 00:25:46,645 | INFO     | PID=16689 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 19:25:51] 2025-11-30 00:25:46,645 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 19:25:51] 2025-11-30 00:25:46,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 19:25:51] 2025-11-30 00:25:46,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 19:25:51] 2025-11-30 00:25:46,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 19:25:51] 2025-11-30 00:25:46,646 | INFO     | [monitor] control thread has ended
[2025-11-29 19:25:51] 2025-11-30 00:25:50,832 | INFO     | all workflow threads have been joined
[2025-11-29 19:25:51] 2025-11-30 00:25:50,832 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 19:25:51] 2025-11-30 00:25:50,833 | INFO     | traces error code: 0
[2025-11-29 19:25:51] 2025-11-30 00:25:50,833 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 19:25:51] 2025-11-30 00:25:50,938 [wrapper] ==== pilot stdout END ====
[2025-11-29 19:25:51] 2025-11-30 00:25:50,942 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 19:25:51] 2025-11-30 00:25:50,945 [wrapper] pilotpid: 16689
[2025-11-29 19:25:51] 2025-11-30 00:25:50,949 [wrapper] Pilot exit status: 0
[2025-11-29 19:25:51] 2025-11-30 00:25:50,964 [wrapper] pandaids: 6897863912 6897863912
[2025-11-29 19:25:51] 2025-11-30 00:25:51,005 [wrapper] cleanup supervisor_pilot  5997 16690
[2025-11-29 19:25:51] 2025-11-30 00:25:51,009 [wrapper] Test setup, not cleaning
[2025-11-29 19:25:51] 2025-11-30 00:25:51,012 [wrapper] apfmon messages muted
[2025-11-29 19:25:51] 2025-11-30 00:25:51,016 [wrapper] ==== wrapper stdout END ====
[2025-11-29 19:25:51] 2025-11-30 00:25:51,020 [wrapper] ==== wrapper stderr END ====
[2025-11-29 19:25:51]  *** Error codes and diagnostics ***
[2025-11-29 19:25:51]     "exeErrorCode": 0,
[2025-11-29 19:25:51]     "exeErrorDiag": "",
[2025-11-29 19:25:51]     "pilotErrorCode": 0,
[2025-11-29 19:25:51]     "pilotErrorDiag": "",
[2025-11-29 19:25:51]  *** Listing of results directory ***
[2025-11-29 19:25:51] total 1720688
[2025-11-29 19:25:51] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-29 19:25:51] -rwx------ 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas       100 Nov 29 10:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 19:25:51] -rwxr-xr-x 1 boincer umatlas      7986 Nov 29 10:15 run_atlas
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas       105 Nov 29 10:15 job.xml
[2025-11-29 19:25:51] -rw-r--r-- 3 boincer umatlas 410734246 Nov 29 10:16 EVNT.47483658._003126.pool.root.1
[2025-11-29 19:25:51] -rw-r--r-- 3 boincer umatlas 410734246 Nov 29 10:16 ATLAS.root_0
[2025-11-29 19:25:51] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 10:16 start_atlas.sh
[2025-11-29 19:25:51] drwxrwx--x 2 boincer umatlas      4096 Nov 29 10:16 shared
[2025-11-29 19:25:51] -rw-r--r-- 2 boincer umatlas    590109 Nov 29 10:16 input.tar.gz
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas         0 Nov 29 10:16 boinc_lockfile
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas      2785 Nov 29 12:11 pandaJob.out
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas        57 Nov 29 12:11 setup.sh.local
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas    991834 Nov 29 12:12 agis_schedconf.cvmfs.json
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas       532 Nov 29 19:14 boinc_task_state.xml
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas      5955 Nov 29 19:20 init_data.xml
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas 924918006 Nov 29 19:24 HITS.47556173._000930.pool.root.1
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas      1061 Nov 29 19:25 memory_monitor_summary.json
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas   1516240 Nov 29 19:25 agis_ddmendpoints.agis.ALL.json
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas   2178747 Nov 29 19:25 log.47556173._000930.job.log.tgz.1
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas        96 Nov 29 19:25 pilot_heartbeat.json
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas      8661 Nov 29 19:25 heartbeat.json
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas        29 Nov 29 19:25 wrapper_checkpoint.txt
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas      8192 Nov 29 19:25 boinc_mmap_file
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas      4932 Nov 29 19:25 pilotlog.txt
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas   3657378 Nov 29 19:25 log.47556173._000930.job.log.1
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas       353 Nov 29 19:25 output.list
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas       620 Nov 29 19:25 runtime_log
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas   5857280 Nov 29 19:25 result.tar.gz
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas      9425 Nov 29 19:25 runtime_log.err
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas       794 Nov 29 19:25 nnJODmlbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdfMKDmqY7Cam.diag
[2025-11-29 19:25:51] -rw-r--r-- 1 boincer umatlas     23460 Nov 29 19:25 stderr.txt
[2025-11-29 19:25:51] HITS file was successfully produced:
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas 924918006 Nov 29 19:24 shared/HITS.pool.root.1
[2025-11-29 19:25:51]  *** Contents of shared directory: ***
[2025-11-29 19:25:51] total 1310676
[2025-11-29 19:25:51] -rw-r--r-- 3 boincer umatlas 410734246 Nov 29 10:16 ATLAS.root_0
[2025-11-29 19:25:51] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 10:16 start_atlas.sh
[2025-11-29 19:25:51] -rw-r--r-- 2 boincer umatlas    590109 Nov 29 10:16 input.tar.gz
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas 924918006 Nov 29 19:24 HITS.pool.root.1
[2025-11-29 19:25:51] -rw------- 1 boincer umatlas   5857280 Nov 29 19:25 result.tar.gz
19:25:53 (12979): run_atlas exited; CPU time 290849.555719
19:25:53 (12979): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN