Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
17:21:26 (2687081): wrapper (7.7.26015): starting
17:21:26 (2687081): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 17:21:26] Arguments: --nthreads 12
[2025-11-29 17:21:26] Threads: 12
[2025-11-29 17:21:26] Checking for CVMFS
[2025-11-29 17:21:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 17:21:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 17:21:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 17:21:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 17:21:27] 2.13.0.0 498242 15310 44944 153451 1 81 73387681 82903040 1302 130560 29 6681005 99.984 478731 218 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-29 17:21:27] CVMFS is ok
[2025-11-29 17:21:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 17:21:27] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-29 17:21:27] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-29 17:21:27] Further information can be found at the LHC@home message board.
[2025-11-29 17:21:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 17:21:27] Checking for apptainer binary...
[2025-11-29 17:21:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 17:21:27] Running /usr/bin/apptainer --version
[2025-11-29 17:21:27] apptainer version 1.4.4
[2025-11-29 17:21:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 17:21:27] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) torr
[2025-11-29 17:21:27] apptainer works
[2025-11-29 17:21:27] Set ATHENA_PROC_NUMBER=12
[2025-11-29 17:21:27] Set ATHENA_CORE_NUMBER=12
[2025-11-29 17:21:27] Starting ATLAS job with PandaID=6900297473
[2025-11-29 17:21:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 20:49:58]  *** The last 200 lines of the pilot log: ***
[2025-11-29 20:49:58] 2025-11-29 20:49:00,507 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6900297473/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 20:49:58] 2025-11-29 20:49:00,507 | INFO     | extracted standard info from prmon json
[2025-11-29 20:49:58] 2025-11-29 20:49:00,507 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 20:49:58] 2025-11-29 20:49:00,507 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 20:49:58] 2025-11-29 20:49:00,508 | INFO     | fitting pss+swap vs Time
[2025-11-29 20:49:58] 2025-11-29 20:49:00,509 | INFO     | sum of square deviations: 2632430769.426478
[2025-11-29 20:49:58] 2025-11-29 20:49:00,509 | INFO     | sum of deviations: 75803119670.1765
[2025-11-29 20:49:58] 2025-11-29 20:49:00,509 | INFO     | mean x: 1764443097.8676472
[2025-11-29 20:49:58] 2025-11-29 20:49:00,509 | INFO     | mean y: 3519616.117647059
[2025-11-29 20:49:58] 2025-11-29 20:49:00,509 | INFO     | intersect: -50805144699.87426
[2025-11-29 20:49:58] 2025-11-29 20:49:00,509 | INFO     | chi2: 2.4964188766139945
[2025-11-29 20:49:58] 2025-11-29 20:49:00,509 | INFO     | sum of square deviations: 2443581966.4824243
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | sum of deviations: 106833504709.43222
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | mean x: 1764442945.3718593
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | mean y: 3544308.2914572866
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | intersect: -77137974290.02269
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | chi2: 1.5576667686722416
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | current chi2=1.5576667686722416 (change=37.60395007167326 %)
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | sum of square deviations: 2263964628.5154624
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | sum of deviations: 101518237061.21648
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | mean x: 1764442792.8659794
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | mean y: 3539795.12371134
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | intersect: -79115682948.46606
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | chi2: 1.5581227753243136
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | current chi2=1.5581227753243136 (change=-0.029274981096291685 %)
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | right removable region: 193
[2025-11-29 20:49:58] 2025-11-29 20:49:00,510 | INFO     | sum of square deviations: 2443548538.733671
[2025-11-29 20:49:58] 2025-11-29 20:49:00,511 | INFO     | sum of deviations: 28410746113.572853
[2025-11-29 20:49:58] 2025-11-29 20:49:00,511 | INFO     | mean x: 1764443250.3768845
[2025-11-29 20:49:58] 2025-11-29 20:49:00,511 | INFO     | mean y: 3557498.472361809
[2025-11-29 20:49:58] 2025-11-29 20:49:00,511 | INFO     | intersect: -20511340578.503647
[2025-11-29 20:49:58] 2025-11-29 20:49:00,511 | INFO     | chi2: 0.9981012722642375
[2025-11-29 20:49:58] 2025-11-29 20:49:00,511 | INFO     | current chi2=0.9981012722642375 (change=60.01867789038644 %)
[2025-11-29 20:49:58] 2025-11-29 20:49:00,511 | INFO     | sum of square deviations: 2263958711.7783375
[2025-11-29 20:49:58] 2025-11-29 20:49:00,511 | INFO     | sum of deviations: 19292063602.22164
[2025-11-29 20:49:58] 2025-11-29 20:49:00,511 | INFO     | mean x: 1764443402.871134
[2025-11-29 20:49:58] 2025-11-29 20:49:00,511 | INFO     | mean y: 3565227.1288659796
[2025-11-29 20:49:58] 2025-11-29 20:49:00,511 | INFO     | intersect: -15031936159.719353
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | chi2: 0.9794122531415201
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | current chi2=0.9794122531415201 (change=1.8724571986889154 %)
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | left removable region: 20
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | sum of square deviations: 1605444644.578034
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | sum of deviations: 34990023892.271675
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | mean x: 1764443372.3757226
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | mean y: 3599400.8265895955
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | intersect: -38451738168.419716
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | chi2: 0.021878596642943587
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | current memory leak: 21.79 B/s (using 173 data points, chi2=0.02)
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | could have reported an average CPU frequency of 3493 MHz (10 samples)
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | ..............................
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | . Timing measurements:
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | . get job = 0 s
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | . initial setup = 1 s
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | . payload setup = 1 s
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | . stage-in = 0 s
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | . payload execution = 12429 s
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | . stage-out = 1 s
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | . log creation = 0 s
[2025-11-29 20:49:58] 2025-11-29 20:49:00,512 | INFO     | ..............................
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | 
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | job summary report
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | --------------------------------------------------
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | PanDA job id: 6900297473
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | task id: 47556173
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | errors: (none)
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | pilot state: finished 
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | transexitcode: 0
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | exeerrorcode: 0
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | exeerrordiag: 
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | exitcode: 0
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | exitmsg: OK
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | cpuconsumptiontime: 123180 s
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | nevents: 1000
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | neventsw: 0
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | pid: 2697392
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | pgrp: 2697392
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | corecount: 12
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | event service: False
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | sizes: {0: 2284323, 1: 2284585, 10: 2284613, 12435: 2315653, 12436: 2324661, 12437: 2324717, 12438: 2325091}
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | --------------------------------------------------
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | 
[2025-11-29 20:49:58] 2025-11-29 20:49:00,538 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | job 6900297473 has completed (purged errors)
[2025-11-29 20:49:58] 2025-11-29 20:49:00,546 | INFO     | overall cleanup function is called
[2025-11-29 20:49:58] 2025-11-29 20:49:01,002 | INFO     | PID=2690815 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 20:49:58] 2025-11-29 20:49:01,531 | WARNING  | process 2697392 can no longer be monitored (due to stat problems) - aborting
[2025-11-29 20:49:58] 2025-11-29 20:49:01,551 | INFO     | using path: /var/lib/boinc-client/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 20:49:58] 2025-11-29 20:49:01,555 | INFO     | --- collectZombieJob: --- 10, [2697392]
[2025-11-29 20:49:58] 2025-11-29 20:49:01,555 | INFO     | zombie collector waiting for pid 2697392
[2025-11-29 20:49:58] 2025-11-29 20:49:01,555 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 20:49:58] 2025-11-29 20:49:01,555 | INFO     | collected zombie processes
[2025-11-29 20:49:58] 2025-11-29 20:49:01,555 | INFO     | will attempt to kill all subprocesses of pid=2697392
[2025-11-29 20:49:58] 2025-11-29 20:49:01,609 | INFO     | number of running child processes to parent process 2697392: 1
[2025-11-29 20:49:58] 2025-11-29 20:49:01,610 | INFO     | maximum number of monitored processes: 18
[2025-11-29 20:49:58] 2025-11-29 20:49:01,610 | INFO     | aborting job monitoring since job object (job id=6900297473) has expired
[2025-11-29 20:49:58] 2025-11-29 20:49:01,612 | INFO     | process IDs to be killed: [2697392] (in reverse order)
[2025-11-29 20:49:58] 2025-11-29 20:49:01,627 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 20:49:58] 2025-11-29 20:49:01,627 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 20:49:58] 2025-11-29 20:49:01,628 | INFO     | did not find any defunct processes belonging to 2697392
[2025-11-29 20:49:58] 2025-11-29 20:49:01,629 | INFO     | did not find any defunct processes belonging to 2697392
[2025-11-29 20:49:58] 2025-11-29 20:49:01,629 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 20:49:58] 2025-11-29 20:49:01,629 | INFO     | ready for new job
[2025-11-29 20:49:58] 2025-11-29 20:49:01,629 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 20:49:58] 2025-11-29 20:49:01,639 | INFO     | ***************************************
[2025-11-29 20:49:58] 2025-11-29 20:49:01,639 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 20:49:58] 2025-11-29 20:49:01,639 | INFO     | ***************************************
[2025-11-29 20:49:58] 2025-11-29 20:49:01,639 | INFO     | 
[2025-11-29 20:49:58] 2025-11-29 20:49:01,639 | INFO     | architecture information:
[2025-11-29 20:49:58] 2025-11-29 20:49:01,639 | INFO     | executing command: cat /etc/os-release
[2025-11-29 20:49:58] 2025-11-29 20:49:01,643 | INFO     | cat /etc/os-release:
[2025-11-29 20:49:58] NAME="CentOS Linux"
[2025-11-29 20:49:58] VERSION="7 (Core)"
[2025-11-29 20:49:58] ID="centos"
[2025-11-29 20:49:58] ID_LIKE="rhel fedora"
[2025-11-29 20:49:58] VERSION_ID="7"
[2025-11-29 20:49:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 20:49:58] ANSI_COLOR="0;31"
[2025-11-29 20:49:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 20:49:58] HOME_URL="https://www.centos.org/"
[2025-11-29 20:49:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 20:49:58] 
[2025-11-29 20:49:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 20:49:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 20:49:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 20:49:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 20:49:58] 
[2025-11-29 20:49:58] 2025-11-29 20:49:01,643 | INFO     | ***************************************
[2025-11-29 20:49:58] 2025-11-29 20:49:02,144 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-11-29 20:49:58] 2025-11-29 20:49:02,150 | INFO     | sufficient remaining disk space (398197784576 B)
[2025-11-29 20:49:58] 2025-11-29 20:49:02,150 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 20:49:58] 2025-11-29 20:49:02,150 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 20:49:58] 2025-11-29 20:49:02,150 | INFO     | update_server=False
[2025-11-29 20:49:58] 2025-11-29 20:49:02,150 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 20:49:58] 2025-11-29 20:49:02,150 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 20:49:58] 2025-11-29 20:49:02,150 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 20:49:58] 2025-11-29 20:49:02,150 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 20:49:58] 2025-11-29 20:49:02,150 | INFO     | will abort loop
[2025-11-29 20:49:58] 2025-11-29 20:49:02,216 | INFO     | all payload control threads have been joined
[2025-11-29 20:49:58] 2025-11-29 20:49:03,116 | INFO     | all data control threads have been joined
[2025-11-29 20:49:58] 2025-11-29 20:49:03,154 | INFO     | [job] retrieve thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:03,155 | INFO     | [job] job monitor thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:03,155 | INFO     | [job] queue monitor thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:03,215 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:03,221 | INFO     | [payload] control thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:03,239 | INFO     | all job control threads have been joined
[2025-11-29 20:49:58] 2025-11-29 20:49:03,371 | INFO     | [payload] validate_post thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:03,540 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:04,121 | INFO     | [data] control thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:04,155 | INFO     | [data] copytool_out thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:04,244 | INFO     | [job] control thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:04,321 | INFO     | [payload] failed_post thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:04,431 | INFO     | [job] validate thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:04,432 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:04,439 | INFO     | [data] copytool_in thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:04,509 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:05,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 20:49:58] 2025-11-29 20:49:09,316 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 20:49:58] 2025-11-29 20:49:33,098 | INFO     | PID=2690815 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 20:49:58] 2025-11-29 20:49:33,098 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 20:49:58] 2025-11-29 20:49:33,098 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 20:49:58] 2025-11-29 20:49:33,098 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 20:49:58] 2025-11-29 20:49:51,276 | INFO     | [monitor] cgroup control has ended
[2025-11-29 20:49:58] 2025-11-29 20:49:53,045 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123669104863040)>', '<ExcThread(monitor, started 123668474619648)>']
[2025-11-29 20:49:58] 2025-11-29 20:49:53,181 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 20:49:58] 2025-11-29 20:49:53,181 | INFO     | [monitor] control thread has ended
[2025-11-29 20:49:58] 2025-11-29 20:49:58,065 | INFO     | all workflow threads have been joined
[2025-11-29 20:49:58] 2025-11-29 20:49:58,065 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 20:49:58] 2025-11-29 20:49:58,065 | INFO     | traces error code: 0
[2025-11-29 20:49:58] 2025-11-29 20:49:58,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 20:49:58] 2025-11-29 20:49:58,105 [wrapper] ==== pilot stdout END ====
[2025-11-29 20:49:58] 2025-11-29 20:49:58,106 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 20:49:58] 2025-11-29 20:49:58,107 [wrapper] pilotpid: 2690815
[2025-11-29 20:49:58] 2025-11-29 20:49:58,107 [wrapper] Pilot exit status: 0
[2025-11-29 20:49:58] 2025-11-29 20:49:58,111 [wrapper] pandaids: 6900297473
[2025-11-29 20:49:58] 2025-11-29 20:49:58,120 [wrapper] cleanup supervisor_pilot 2781614 2690816
[2025-11-29 20:49:58] 2025-11-29 20:49:58,121 [wrapper] Test setup, not cleaning
[2025-11-29 20:49:58] 2025-11-29 20:49:58,122 [wrapper] apfmon messages muted
[2025-11-29 20:49:58] 2025-11-29 20:49:58,122 [wrapper] ==== wrapper stdout END ====
[2025-11-29 20:49:58] 2025-11-29 20:49:58,123 [wrapper] ==== wrapper stderr END ====
[2025-11-29 20:49:58]  *** Error codes and diagnostics ***
[2025-11-29 20:49:58]     "exeErrorCode": 0,
[2025-11-29 20:49:58]     "exeErrorDiag": "",
[2025-11-29 20:49:58]     "pilotErrorCode": 0,
[2025-11-29 20:49:58]     "pilotErrorDiag": "",
[2025-11-29 20:49:58]  *** Listing of results directory ***
[2025-11-29 20:49:58] total 1308500
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc    576529 Nov 27 16:16 pilot3.tar.gz
[2025-11-29 20:49:58] -rwx------ 1 boinc boinc     36292 Nov 27 16:20 runpilot2-wrapper.sh
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc      5112 Nov 27 16:22 queuedata.json
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc       100 Nov 29 17:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 20:49:58] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 17:21 run_atlas
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc       105 Nov 29 17:21 job.xml
[2025-11-29 20:49:58] -rw-r--r-- 2 boinc boinc     15847 Nov 29 17:21 start_atlas.sh
[2025-11-29 20:49:58] drwxrwx--x 2 boinc boinc      4096 Nov 29 17:21 shared
[2025-11-29 20:49:58] -rw-r--r-- 2 boinc boinc    590107 Nov 29 17:21 input.tar.gz
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc      9907 Nov 29 17:21 init_data.xml
[2025-11-29 20:49:58] -rw-r--r-- 2 boinc boinc 411018545 Nov 29 17:21 EVNT.47483658._003441.pool.root.1
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc         0 Nov 29 17:21 boinc_lockfile
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc      2787 Nov 29 17:21 pandaJob.out
[2025-11-29 20:49:58] -rw------- 1 boinc boinc    991834 Nov 29 17:21 agis_schedconf.cvmfs.json
[2025-11-29 20:49:58] drwx------ 5 boinc boinc      4096 Nov 29 17:21 pilot3
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc       532 Nov 29 20:45 boinc_task_state.xml
[2025-11-29 20:49:58] -rw------- 1 boinc boinc 917489051 Nov 29 20:48 HITS.47556173._003980.pool.root.1
[2025-11-29 20:49:58] -rw------- 1 boinc boinc      1056 Nov 29 20:48 memory_monitor_summary.json
[2025-11-29 20:49:58] -rw------- 1 boinc boinc   1516240 Nov 29 20:48 agis_ddmendpoints.agis.ALL.json
[2025-11-29 20:49:58] -rw------- 1 boinc boinc   1948300 Nov 29 20:48 log.47556173._003980.job.log.tgz.1
[2025-11-29 20:49:58] -rw------- 1 boinc boinc      8602 Nov 29 20:49 heartbeat.json
[2025-11-29 20:49:58] -rw------- 1 boinc boinc        95 Nov 29 20:49 pilot_heartbeat.json
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc      8192 Nov 29 20:49 boinc_mmap_file
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc        29 Nov 29 20:49 wrapper_checkpoint.txt
[2025-11-29 20:49:58] -rw------- 1 boinc boinc      4758 Nov 29 20:49 pilotlog.txt
[2025-11-29 20:49:58] -rw------- 1 boinc boinc   1788265 Nov 29 20:49 log.47556173._003980.job.log.1
[2025-11-29 20:49:58] -rw------- 1 boinc boinc       353 Nov 29 20:49 output.list
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc       620 Nov 29 20:49 runtime_log
[2025-11-29 20:49:58] -rw------- 1 boinc boinc   3758080 Nov 29 20:49 result.tar.gz
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc      9048 Nov 29 20:49 runtime_log.err
[2025-11-29 20:49:58] -rw------- 1 boinc boinc       660 Nov 29 20:49 ldQODmLuti8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmv4NKDm5NATUn.diag
[2025-11-29 20:49:58] -rw-r--r-- 1 boinc boinc     21720 Nov 29 20:49 stderr.txt
[2025-11-29 20:49:58] HITS file was successfully produced:
[2025-11-29 20:49:58] -rw------- 1 boinc boinc 917489051 Nov 29 20:48 shared/HITS.pool.root.1
[2025-11-29 20:49:58]  *** Contents of shared directory: ***
[2025-11-29 20:49:58] total 1301648
[2025-11-29 20:49:58] -rw-r--r-- 2 boinc boinc     15847 Nov 29 17:21 start_atlas.sh
[2025-11-29 20:49:58] -rw-r--r-- 2 boinc boinc    590107 Nov 29 17:21 input.tar.gz
[2025-11-29 20:49:58] -rw-r--r-- 2 boinc boinc 411018545 Nov 29 17:21 ATLAS.root_0
[2025-11-29 20:49:58] -rw------- 1 boinc boinc 917489051 Nov 29 20:48 HITS.pool.root.1
[2025-11-29 20:49:58] -rw------- 1 boinc boinc   3758080 Nov 29 20:49 result.tar.gz
20:49:59 (2687081): run_atlas exited; CPU time 122748.859669
20:49:59 (2687081): called boinc_finish(0)

</stderr_txt>
]]>

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