Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:59:48 (2630197): wrapper (7.7.26015): starting
01:59:48 (2630197): wrapper: running run_atlas (--nthreads 3)
[2025-12-03 01:59:48] Arguments: --nthreads 3
[2025-12-03 01:59:48] Threads: 3
[2025-12-03 01:59:48] Checking for CVMFS
[2025-12-03 01:59:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 01:59:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 01:59:48] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 01:59:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 01:59:49] 2.9.2.0 2501968 960 60276 153575 1 81 35329578 36864001 0 130560 0 358282 99.984 26625 7681 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-03 01:59:49] CVMFS is ok
[2025-12-03 01:59:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-03 01:59:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-03 01:59:49] Further information can be found at the LHC@home message board.
[2025-12-03 01:59:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 01:59:49] Checking for apptainer binary...
[2025-12-03 01:59:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 01:59:49] Running /usr/bin/apptainer --version
[2025-12-03 01:59:49] apptainer version 1.4.1-1.1
[2025-12-03 01:59:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 01:59:49] thA385
[2025-12-03 01:59:49] apptainer works
[2025-12-03 01:59:49] Set ATHENA_PROC_NUMBER=3
[2025-12-03 01:59:49] Set ATHENA_CORE_NUMBER=3
[2025-12-03 01:59:49] Starting ATLAS job with PandaID=6892547882
[2025-12-03 01:59:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 10:02:43]  *** The last 200 lines of the pilot log: ***
[2025-12-03 10:02:43] 2025-12-03 09:02:12,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 10:02:43] 2025-12-03 09:02:12,053 | INFO     | collected zombie processes
[2025-12-03 10:02:43] 2025-12-03 09:02:12,053 | INFO     | will attempt to kill all subprocesses of pid=2640395
[2025-12-03 10:02:43] 2025-12-03 09:02:12,097 | INFO     | process IDs to be killed: [2640395] (in reverse order)
[2025-12-03 10:02:43] 2025-12-03 09:02:12,123 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 10:02:43] 2025-12-03 09:02:12,123 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 10:02:43] 2025-12-03 09:02:12,124 | INFO     | did not find any defunct processes belonging to 2640395
[2025-12-03 10:02:43] 2025-12-03 09:02:12,125 | INFO     | did not find any defunct processes belonging to 2640395
[2025-12-03 10:02:43] 2025-12-03 09:02:12,126 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 10:02:43] 2025-12-03 09:02:12,126 | INFO     | ready for new job
[2025-12-03 10:02:43] 2025-12-03 09:02:12,126 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 10:02:43] 2025-12-03 09:02:12,127 | INFO     | ***************************************
[2025-12-03 10:02:43] 2025-12-03 09:02:12,127 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 10:02:43] 2025-12-03 09:02:12,127 | INFO     | ***************************************
[2025-12-03 10:02:43] 2025-12-03 09:02:12,127 | INFO     | 
[2025-12-03 10:02:43] 2025-12-03 09:02:12,127 | INFO     | architecture information:
[2025-12-03 10:02:43] 2025-12-03 09:02:12,128 | INFO     | executing command: cat /etc/os-release
[2025-12-03 10:02:43] 2025-12-03 09:02:12,136 | INFO     | cat /etc/os-release:
[2025-12-03 10:02:43] NAME="CentOS Linux"
[2025-12-03 10:02:43] VERSION="7 (Core)"
[2025-12-03 10:02:43] ID="centos"
[2025-12-03 10:02:43] ID_LIKE="rhel fedora"
[2025-12-03 10:02:43] VERSION_ID="7"
[2025-12-03 10:02:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 10:02:43] ANSI_COLOR="0;31"
[2025-12-03 10:02:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 10:02:43] HOME_URL="https://www.centos.org/"
[2025-12-03 10:02:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 10:02:43] 
[2025-12-03 10:02:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 10:02:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 10:02:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 10:02:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 10:02:43] 
[2025-12-03 10:02:43] 2025-12-03 09:02:12,137 | INFO     | ***************************************
[2025-12-03 10:02:43] 2025-12-03 09:02:12,640 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-03 10:02:43] 2025-12-03 09:02:12,653 | INFO     | sufficient remaining disk space (366646132736 B)
[2025-12-03 10:02:43] 2025-12-03 09:02:12,653 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 10:02:43] 2025-12-03 09:02:12,653 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 10:02:43] 2025-12-03 09:02:12,653 | INFO     | update_server=False
[2025-12-03 10:02:43] 2025-12-03 09:02:12,653 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 10:02:43] 2025-12-03 09:02:12,653 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 10:02:43] 2025-12-03 09:02:12,653 | INFO     | aborting loop
[2025-12-03 10:02:43] 2025-12-03 09:02:12,758 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 10:02:43] 2025-12-03 09:02:13,015 | INFO     | all payload control threads have been joined
[2025-12-03 10:02:43] 2025-12-03 09:02:13,071 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 10:02:43] 2025-12-03 09:02:13,480 | INFO     | all data control threads have been joined
[2025-12-03 10:02:43] 2025-12-03 09:02:13,659 | INFO     | [job] retrieve thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:13,659 | INFO     | [job] job monitor thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:14,021 | INFO     | [payload] control thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:14,326 | INFO     | all job control threads have been joined
[2025-12-03 10:02:43] 2025-12-03 09:02:14,394 | INFO     | [payload] failed_post thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:14,453 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:14,485 | INFO     | [data] control thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:14,645 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:14,657 | INFO     | [data] copytool_in thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:14,728 | INFO     | [job] validate thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:14,764 | INFO     | [data] copytool_out thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:15,039 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:15,180 | INFO     | [payload] validate_post thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:15,332 | INFO     | [job] control thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:15,651 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 10:02:43] 2025-12-03 09:02:16,657 | INFO     | [job] queue monitor thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:17,078 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:22,899 | INFO     | job.realtimelogging is not enabled
[2025-12-03 10:02:43] 2025-12-03 09:02:23,900 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 10:02:43] 2025-12-03 09:02:29,844 | INFO     | [monitor] cgroup control has ended
[2025-12-03 10:02:43] 2025-12-03 09:02:31,074 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140544993687360)>', '<ExcThread(monitor, started 140544265148160)>']
[2025-12-03 10:02:43] 2025-12-03 09:02:36,075 | INFO     | all workflow threads have been joined
[2025-12-03 10:02:43] 2025-12-03 09:02:36,075 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 10:02:43] 2025-12-03 09:02:36,075 | INFO     | traces error code: 0
[2025-12-03 10:02:43] 2025-12-03 09:02:36,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 10:02:43] 2025-12-03 09:02:43,103 | INFO     | PID=2633914 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 10:02:43] 2025-12-03 09:02:43,103 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 10:02:43] 2025-12-03 09:02:43,103 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 10:02:43] 2025-12-03 09:02:43,103 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 10:02:43] 2025-12-03 09:02:43,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 10:02:43] 2025-12-03 09:02:43,103 | INFO     | [monitor] control thread has ended
[2025-12-03 10:02:43] 2025-12-03 09:02:43,150 [wrapper] ==== pilot stdout END ====
[2025-12-03 10:02:43] 2025-12-03 09:02:43,153 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 10:02:43] 2025-12-03 09:02:43,155 [wrapper] pilotpid: 2633914
[2025-12-03 10:02:43] 2025-12-03 09:02:43,157 [wrapper] Pilot exit status: 0
[2025-12-03 10:02:43] 2025-12-03 09:02:43,165 [wrapper] pandaids: 6892547882
[2025-12-03 10:02:43] 2025-12-03 09:02:43,182 [wrapper] cleanup supervisor_pilot 2691109 2633915
[2025-12-03 10:02:43] 2025-12-03 09:02:43,185 [wrapper] Test setup, not cleaning
[2025-12-03 10:02:43] 2025-12-03 09:02:43,187 [wrapper] apfmon messages muted
[2025-12-03 10:02:43] 2025-12-03 09:02:43,190 [wrapper] ==== wrapper stdout END ====
[2025-12-03 10:02:43] 2025-12-03 09:02:43,192 [wrapper] ==== wrapper stderr END ====
[2025-12-03 10:02:43]  *** Error codes and diagnostics ***
[2025-12-03 10:02:43]     "exeErrorCode": 0,
[2025-12-03 10:02:43]     "exeErrorDiag": "",
[2025-12-03 10:02:43]     "pilotErrorCode": 0,
[2025-12-03 10:02:43]     "pilotErrorDiag": "",
[2025-12-03 10:02:43]  *** Listing of results directory ***
[2025-12-03 10:02:43] total 1321640
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc    576529 Nov 19 09:32 pilot3.tar.gz
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc      5112 Nov 19 09:33 queuedata.json
[2025-12-03 10:02:43] -rwx------ 1 boinc boinc     36292 Nov 19 09:35 runpilot2-wrapper.sh
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc       100 Dec  3 01:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 10:02:43] -rwxr-xr-x 1 boinc boinc      7986 Dec  3 01:59 run_atlas
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc       105 Dec  3 01:59 job.xml
[2025-12-03 10:02:43] -rw-r--r-- 2 boinc boinc 408989317 Dec  3 01:59 EVNT.47493027._000318.pool.root.1
[2025-12-03 10:02:43] -rw-r--r-- 2 boinc boinc    590100 Dec  3 01:59 input.tar.gz
[2025-12-03 10:02:43] -rw-r--r-- 2 boinc boinc     15120 Dec  3 01:59 start_atlas.sh
[2025-12-03 10:02:43] drwxrwx--x 2 boinc boinc      4096 Dec  3 01:59 shared
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc         0 Dec  3 01:59 boinc_setup_complete
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc      6447 Dec  3 01:59 init_data.xml
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc         0 Dec  3 01:59 boinc_lockfile
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc      2773 Dec  3 01:59 pandaJob.out
[2025-12-03 10:02:43] -rw------- 1 boinc boinc    989284 Dec  3 01:59 agis_schedconf.cvmfs.json
[2025-12-03 10:02:43] drwx------ 5 boinc boinc      4096 Dec  3 01:59 pilot3
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc       531 Dec  3 09:58 boinc_task_state.xml
[2025-12-03 10:02:43] -rw------- 1 boinc boinc 929991528 Dec  3 10:01 HITS.47493029._003140.pool.root.1
[2025-12-03 10:02:43] -rw------- 1 boinc boinc      1027 Dec  3 10:01 memory_monitor_summary.json
[2025-12-03 10:02:43] -rw------- 1 boinc boinc   1516240 Dec  3 10:02 agis_ddmendpoints.agis.ALL.json
[2025-12-03 10:02:43] -rw------- 1 boinc boinc   1171216 Dec  3 10:02 log.47493029._003140.job.log.tgz.1
[2025-12-03 10:02:43] -rw------- 1 boinc boinc      8556 Dec  3 10:02 heartbeat.json
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc      8192 Dec  3 10:02 boinc_mmap_file
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc        28 Dec  3 10:02 wrapper_checkpoint.txt
[2025-12-03 10:02:43] -rw------- 1 boinc boinc       747 Dec  3 10:02 pilotlog.txt
[2025-12-03 10:02:43] -rw------- 1 boinc boinc        95 Dec  3 10:02 pilot_heartbeat.json
[2025-12-03 10:02:43] -rw------- 1 boinc boinc   4071667 Dec  3 10:02 log.47493029._003140.job.log.1
[2025-12-03 10:02:43] -rw------- 1 boinc boinc       353 Dec  3 10:02 output.list
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc       620 Dec  3 10:02 runtime_log
[2025-12-03 10:02:43] -rw------- 1 boinc boinc   5263360 Dec  3 10:02 result.tar.gz
[2025-12-03 10:02:43] -rw------- 1 boinc boinc       665 Dec  3 10:02 3iXLDm3psf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDml6FKDmJlc5Dm.diag
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc      8778 Dec  3 10:02 runtime_log.err
[2025-12-03 10:02:43] -rw-r--r-- 1 boinc boinc     10729 Dec  3 10:02 stderr.txt
[2025-12-03 10:02:43] HITS file was successfully produced:
[2025-12-03 10:02:43] -rw------- 1 boinc boinc 929991528 Dec  3 10:01 shared/HITS.pool.root.1
[2025-12-03 10:02:43]  *** Contents of shared directory: ***
[2025-12-03 10:02:43] total 1313340
[2025-12-03 10:02:43] -rw-r--r-- 2 boinc boinc 408989317 Dec  3 01:59 ATLAS.root_0
[2025-12-03 10:02:43] -rw-r--r-- 2 boinc boinc    590100 Dec  3 01:59 input.tar.gz
[2025-12-03 10:02:43] -rw-r--r-- 2 boinc boinc     15120 Dec  3 01:59 start_atlas.sh
[2025-12-03 10:02:43] -rw------- 1 boinc boinc 929991528 Dec  3 10:01 HITS.pool.root.1
[2025-12-03 10:02:43] -rw------- 1 boinc boinc   5263360 Dec  3 10:02 result.tar.gz
10:02:44 (2630197): run_atlas exited; CPU time 85392.391334
10:02:44 (2630197): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN