Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:23:09 (1087719): wrapper (7.7.26015): starting
09:23:09 (1087719): wrapper: running run_atlas (--nthreads 10)
[2025-11-29 09:23:09] Arguments: --nthreads 10
[2025-11-29 09:23:09] Threads: 10
[2025-11-29 09:23:09] Checking for CVMFS
[2025-11-29 09:23:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 09:23:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 09:23:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 09:23:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 09:23:11] 2.13.2.0 5795 38281 190284 153445 3 358 33932030 39288833 8853 16776704 0 29098299 99.555 31504912 37058 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 09:23:11] CVMFS is ok
[2025-11-29 09:23:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 09:23:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 09:23:11] Further information can be found at the LHC@home message board.
[2025-11-29 09:23:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 09:23:11] Checking for apptainer binary...
[2025-11-29 09:23:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 09:23:11] Running /usr/bin/apptainer --version
[2025-11-29 09:23:11] apptainer version 1.4.4-1.el9
[2025-11-29 09:23:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 09:23:11] c-210-27.aglt2.org
[2025-11-29 09:23:11] apptainer works
[2025-11-29 09:23:12] Set ATHENA_PROC_NUMBER=10
[2025-11-29 09:23:12] Set ATHENA_CORE_NUMBER=10
[2025-11-29 09:23:12] Starting ATLAS job with PandaID=6897782665
[2025-11-29 09:23:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 13:39:34]  *** The last 200 lines of the pilot log: ***
[2025-11-30 13:39:34] 2025-11-30 18:38:44,123 | INFO     | time since job start (101688s) is within the limit (172800.0s)
[2025-11-30 13:39:34] 2025-11-30 18:38:44,123 | INFO     | 101691s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-30 13:39:34] 2025-11-30 18:38:45,834 | INFO     | monitor loop #6229: job 0:6897782665 is in state 'finished'
[2025-11-30 13:39:34] 2025-11-30 18:38:45,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 13:39:34] 2025-11-30 18:38:46,139 | INFO     | time since job start (101690s) is within the limit (172800.0s)
[2025-11-30 13:39:34] 2025-11-30 18:38:48,148 | INFO     | time since job start (101692s) is within the limit (172800.0s)
[2025-11-30 13:39:34] 2025-11-30 18:38:48,339 | INFO     | monitor loop #6230: job 0:6897782665 is in state 'finished'
[2025-11-30 13:39:34] 2025-11-30 18:38:48,339 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 13:39:34] 2025-11-30 18:38:50,155 | INFO     | time since job start (101694s) is within the limit (172800.0s)
[2025-11-30 13:39:34] 2025-11-30 18:38:50,848 | INFO     | monitor loop #6231: job 0:6897782665 is in state 'finished'
[2025-11-30 13:39:34] 2025-11-30 18:38:50,852 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 13:39:34] 2025-11-30 18:38:52,170 | INFO     | time since job start (101696s) is within the limit (172800.0s)
[2025-11-30 13:39:34] 2025-11-30 18:38:53,358 | INFO     | monitor loop #6232: job 0:6897782665 is in state 'finished'
[2025-11-30 13:39:34] 2025-11-30 18:38:53,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 13:39:34] 2025-11-30 18:38:54,177 | INFO     | time since job start (101698s) is within the limit (172800.0s)
[2025-11-30 13:39:34] 2025-11-30 18:38:54,743 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 13:39:34] 2025-11-30 18:38:54,751 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1665
[2025-11-30 13:39:34] 2025-11-30 18:38:54,759 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897782665/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 13:39:34] 2025-11-30 18:38:54,760 | INFO     | extracted standard info from prmon json
[2025-11-30 13:39:34] 2025-11-30 18:38:54,760 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 13:39:34] 2025-11-30 18:38:54,760 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 13:39:34] 2025-11-30 18:38:54,791 | INFO     | fitting pss+swap vs Time
[2025-11-30 13:39:34] 2025-11-30 18:38:54,794 | INFO     | sum of square deviations: 1428533049973.2642
[2025-11-30 13:39:34] 2025-11-30 18:38:54,864 | INFO     | sum of deviations: 9548234455233.793
[2025-11-30 13:39:34] 2025-11-30 18:38:54,865 | INFO     | mean x: 1764477142.2133412
[2025-11-30 13:39:34] 2025-11-30 18:38:54,865 | INFO     | mean y: 3738278.197716346
[2025-11-30 13:39:34] 2025-11-30 18:38:54,865 | INFO     | intersect: -11789927570.183739
[2025-11-30 13:39:34] 2025-11-30 18:38:54,868 | INFO     | chi2: 21.369546082200795
[2025-11-30 13:39:34] 2025-11-30 18:38:54,870 | INFO     | sum of square deviations: 1415697812885.0972
[2025-11-30 13:39:34] 2025-11-30 18:38:54,939 | INFO     | sum of deviations: 10318068532853.205
[2025-11-30 13:39:34] 2025-11-30 18:38:54,940 | INFO     | mean x: 1764476989.742616
[2025-11-30 13:39:34] 2025-11-30 18:38:54,940 | INFO     | mean y: 3747423.9324894515
[2025-11-30 13:39:34] 2025-11-30 18:38:54,940 | INFO     | intersect: -12856337785.709982
[2025-11-30 13:39:34] 2025-11-30 18:38:54,942 | INFO     | chi2: 17.76159939156994
[2025-11-30 13:39:34] 2025-11-30 18:38:54,943 | INFO     | current chi2=17.76159939156994 (change=16.883590679710313 %)
[2025-11-30 13:39:34] 2025-11-30 18:38:54,943 | INFO     | right removable region: 1658
[2025-11-30 13:39:34] 2025-11-30 18:38:54,945 | INFO     | sum of square deviations: 1415687953455.099
[2025-11-30 13:39:34] 2025-11-30 18:38:55,153 | INFO     | sum of deviations: 8689519820998.254
[2025-11-30 13:39:34] 2025-11-30 18:38:55,154 | INFO     | mean x: 1764477294.742616
[2025-11-30 13:39:34] 2025-11-30 18:38:55,154 | INFO     | mean y: 3748474.1434599156
[2025-11-30 13:39:34] 2025-11-30 18:38:55,154 | INFO     | intersect: -10826647015.8706
[2025-11-30 13:39:34] 2025-11-30 18:38:55,156 | INFO     | chi2: 17.33290332924911
[2025-11-30 13:39:34] 2025-11-30 18:38:55,205 | INFO     | current chi2=17.33290332924911 (change=18.889698159353518 %)
[2025-11-30 13:39:34] 2025-11-30 18:38:55,205 | INFO     | left removable region: 10
[2025-11-30 13:39:34] 2025-11-30 18:38:55,208 | INFO     | sum of square deviations: 1387711963696.6377
[2025-11-30 13:39:34] 2025-11-30 18:38:55,789 | INFO     | sum of deviations: 8852749118226.463
[2025-11-30 13:39:34] 2025-11-30 18:38:55,790 | INFO     | mean x: 1764477264.3070388
[2025-11-30 13:39:34] 2025-11-30 18:38:55,790 | INFO     | mean y: 3769047.572208738
[2025-11-30 13:39:34] 2025-11-30 18:38:55,790 | INFO     | intersect: -11252511041.066929
[2025-11-30 13:39:34] 2025-11-30 18:38:55,792 | INFO     | chi2: 9.66048582983019
[2025-11-30 13:39:34] 2025-11-30 18:38:55,795 | INFO     | current memory leak: 6.38 B/s (using 1648 data points, chi2=9.66)
[2025-11-30 13:39:34] 2025-11-30 18:38:55,797 | INFO     | could have reported an average CPU frequency of 2598 MHz (58 samples)
[2025-11-30 13:39:34] 2025-11-30 18:38:55,797 | INFO     | ..............................
[2025-11-30 13:39:34] 2025-11-30 18:38:55,797 | INFO     | . Timing measurements:
[2025-11-30 13:39:34] 2025-11-30 18:38:55,797 | INFO     | . get job = 0 s
[2025-11-30 13:39:34] 2025-11-30 18:38:55,797 | INFO     | . initial setup = 3 s
[2025-11-30 13:39:34] 2025-11-30 18:38:55,798 | INFO     | . payload setup = 79 s
[2025-11-30 13:39:34] 2025-11-30 18:38:55,798 | INFO     | . stage-in = 0 s
[2025-11-30 13:39:34] 2025-11-30 18:38:55,798 | INFO     | . payload execution = 101500 s
[2025-11-30 13:39:34] 2025-11-30 18:38:55,798 | INFO     | . stage-out = 11 s
[2025-11-30 13:39:34] 2025-11-30 18:38:55,798 | INFO     | . log creation = 2 s
[2025-11-30 13:39:34] 2025-11-30 18:38:55,798 | INFO     | ..............................
[2025-11-30 13:39:34] 2025-11-30 18:38:56,279 | INFO     | 
[2025-11-30 13:39:34] 2025-11-30 18:38:56,279 | INFO     | job summary report
[2025-11-30 13:39:34] 2025-11-30 18:38:56,284 | INFO     | --------------------------------------------------
[2025-11-30 13:39:34] 2025-11-30 18:38:56,284 | INFO     | PanDA job id: 6897782665
[2025-11-30 13:39:34] 2025-11-30 18:38:56,284 | INFO     | task id: 47531058
[2025-11-30 13:39:34] 2025-11-30 18:38:56,284 | INFO     | errors: (none)
[2025-11-30 13:39:34] 2025-11-30 18:38:56,284 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 13:39:34] 2025-11-30 18:38:56,284 | INFO     | pilot state: finished 
[2025-11-30 13:39:34] 2025-11-30 18:38:56,285 | INFO     | transexitcode: 0
[2025-11-30 13:39:34] 2025-11-30 18:38:56,285 | INFO     | exeerrorcode: 0
[2025-11-30 13:39:34] 2025-11-30 18:38:56,285 | INFO     | exeerrordiag: 
[2025-11-30 13:39:34] 2025-11-30 18:38:56,285 | INFO     | exitcode: 0
[2025-11-30 13:39:34] 2025-11-30 18:38:56,285 | INFO     | exitmsg: OK
[2025-11-30 13:39:34] 2025-11-30 18:38:56,285 | INFO     | cpuconsumptiontime: 259412 s
[2025-11-30 13:39:34] 2025-11-30 18:38:56,285 | INFO     | nevents: 1000
[2025-11-30 13:39:34] 2025-11-30 18:38:56,285 | INFO     | neventsw: 0
[2025-11-30 13:39:34] 2025-11-30 18:38:56,285 | INFO     | pid: 1101537
[2025-11-30 13:39:34] 2025-11-30 18:38:56,285 | INFO     | pgrp: 1101537
[2025-11-30 13:39:34] 2025-11-30 18:38:56,286 | INFO     | corecount: 10
[2025-11-30 13:39:34] 2025-11-30 18:38:56,286 | INFO     | event service: False
[2025-11-30 13:39:34] 2025-11-30 18:38:56,286 | INFO     | sizes: {0: 2284222, 1: 2284306, 2: 2284505, 13: 2284505, 24: 2284851, 35: 2284851, 101585: 2375563, 101586: 2375562, 101599: 2384612, 101602: 2384668, 101634: 2384
[2025-11-30 13:39:34] 2025-11-30 18:38:56,286 | INFO     | --------------------------------------------------
[2025-11-30 13:39:34] 2025-11-30 18:38:56,286 | INFO     | 
[2025-11-30 13:39:34] 2025-11-30 18:38:56,286 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-30 13:39:34] 2025-11-30 18:38:56,312 | INFO     | time since job start (101700s) is within the limit (172800.0s)
[2025-11-30 13:39:34] 2025-11-30 18:38:56,599 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,599 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,599 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,600 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,600 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,600 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,600 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,600 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,600 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,600 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,600 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,600 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,600 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,601 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,601 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 13:39:34] 2025-11-30 18:38:56,601 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,601 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 13:39:34] 2025-11-30 18:38:56,601 | INFO     | job 6897782665 has completed (purged errors)
[2025-11-30 13:39:34] 2025-11-30 18:38:56,602 | INFO     | overall cleanup function is called
[2025-11-30 13:39:34] 2025-11-30 18:38:57,753 | INFO     | --- collectZombieJob: --- 10, [1101537]
[2025-11-30 13:39:34] 2025-11-30 18:38:57,753 | INFO     | zombie collector waiting for pid 1101537
[2025-11-30 13:39:34] 2025-11-30 18:38:57,753 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 13:39:34] 2025-11-30 18:38:57,753 | INFO     | collected zombie processes
[2025-11-30 13:39:34] 2025-11-30 18:38:57,753 | INFO     | will attempt to kill all subprocesses of pid=1101537
[2025-11-30 13:39:34] 2025-11-30 18:38:59,478 | INFO     | process IDs to be killed: [1101537] (in reverse order)
[2025-11-30 13:39:34] 2025-11-30 18:39:00,581 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 13:39:34] 2025-11-30 18:39:00,581 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 13:39:34] 2025-11-30 18:39:00,683 | INFO     | did not find any defunct processes belonging to 1101537
[2025-11-30 13:39:34] 2025-11-30 18:39:00,809 | INFO     | did not find any defunct processes belonging to 1101537
[2025-11-30 13:39:34] 2025-11-30 18:39:00,855 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 13:39:34] 2025-11-30 18:39:00,855 | INFO     | ready for new job
[2025-11-30 13:39:34] 2025-11-30 18:39:00,855 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 13:39:34] 2025-11-30 18:39:00,942 | INFO     | ***************************************
[2025-11-30 13:39:34] 2025-11-30 18:39:00,943 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 13:39:34] 2025-11-30 18:39:00,943 | INFO     | ***************************************
[2025-11-30 13:39:34] 2025-11-30 18:39:00,943 | INFO     | 
[2025-11-30 13:39:34] 2025-11-30 18:39:00,993 | INFO     | architecture information:
[2025-11-30 13:39:34] 2025-11-30 18:39:01,006 | INFO     | executing command: cat /etc/os-release
[2025-11-30 13:39:34] 2025-11-30 18:39:01,194 | INFO     | cat /etc/os-release:
[2025-11-30 13:39:34] NAME="CentOS Linux"
[2025-11-30 13:39:34] VERSION="7 (Core)"
[2025-11-30 13:39:34] ID="centos"
[2025-11-30 13:39:34] ID_LIKE="rhel fedora"
[2025-11-30 13:39:34] VERSION_ID="7"
[2025-11-30 13:39:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 13:39:34] ANSI_COLOR="0;31"
[2025-11-30 13:39:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 13:39:34] HOME_URL="https://www.centos.org/"
[2025-11-30 13:39:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 13:39:34] 
[2025-11-30 13:39:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 13:39:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 13:39:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 13:39:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 13:39:34] 
[2025-11-30 13:39:34] 2025-11-30 18:39:01,194 | INFO     | ***************************************
[2025-11-30 13:39:34] 2025-11-30 18:39:01,705 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-30 13:39:34] 2025-11-30 18:39:01,792 | INFO     | sufficient remaining disk space (51632930816 B)
[2025-11-30 13:39:34] 2025-11-30 18:39:01,792 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 13:39:34] 2025-11-30 18:39:01,792 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 13:39:34] 2025-11-30 18:39:01,792 | INFO     | update_server=False
[2025-11-30 13:39:34] 2025-11-30 18:39:01,792 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 13:39:34] 2025-11-30 18:39:01,793 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 13:39:34] 2025-11-30 18:39:01,904 | INFO     | all payload control threads have been joined
[2025-11-30 13:39:34] 2025-11-30 18:39:01,906 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 13:39:34] 2025-11-30 18:39:02,098 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 13:39:34] 2025-11-30 18:39:02,098 | INFO     | aborting loop
[2025-11-30 13:39:34] 2025-11-30 18:39:02,468 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 13:39:34] 2025-11-30 18:39:02,733 | INFO     | all data control threads have been joined
[2025-11-30 13:39:34] 2025-11-30 18:39:02,799 | INFO     | [job] retrieve thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:02,807 | INFO     | [job] queue monitor thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:02,911 | INFO     | [payload] control thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:03,093 | INFO     | [job] validate thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:03,104 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:03,111 | INFO     | [job] job monitor thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:03,115 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:03,208 | INFO     | all job control threads have been joined
[2025-11-30 13:39:34] 2025-11-30 18:39:03,520 | INFO     | [payload] validate_post thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:03,699 | INFO     | [data] copytool_in thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:03,739 | INFO     | [data] control thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:03,901 | INFO     | [payload] failed_post thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:03,913 | INFO     | [data] copytool_out thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:04,215 | INFO     | [job] control thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:04,282 | INFO     | [monitor] cgroup control has ended
[2025-11-30 13:39:34] 2025-11-30 18:39:04,290 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:04,294 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:06,477 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 13:39:34] 2025-11-30 18:39:06,543 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140524000790336)>', '<ExcThread(monitor, started 140523629156096)>']
[2025-11-30 13:39:34] 2025-11-30 18:39:11,569 | INFO     | all workflow threads have been joined
[2025-11-30 13:39:34] 2025-11-30 18:39:11,571 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 13:39:34] 2025-11-30 18:39:11,571 | INFO     | traces error code: 0
[2025-11-30 13:39:34] 2025-11-30 18:39:11,572 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 13:39:34] 2025-11-30 18:39:17,025 [wrapper] supervise_pilot (15 min periods counter: 114)
[2025-11-30 13:39:34] 2025-11-30 18:39:32,765 | INFO     | PID=1092856 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 13:39:34] 2025-11-30 18:39:32,767 | INFO     | .. there are 7 such processes running
[2025-11-30 13:39:34] 2025-11-30 18:39:32,767 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 13:39:34] 2025-11-30 18:39:32,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 13:39:34] 2025-11-30 18:39:32,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 13:39:34] 2025-11-30 18:39:32,767 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 13:39:34] 2025-11-30 18:39:32,767 | INFO     | [monitor] control thread has ended
[2025-11-30 13:39:34] 2025-11-30 18:39:33,521 [wrapper] ==== pilot stdout END ====
[2025-11-30 13:39:34] 2025-11-30 18:39:33,525 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 13:39:34] 2025-11-30 18:39:33,528 [wrapper] pilotpid: 1092856
[2025-11-30 13:39:34] 2025-11-30 18:39:33,532 [wrapper] Pilot exit status: 0
[2025-11-30 13:39:34] 2025-11-30 18:39:33,697 [wrapper] pandaids: 6897782665
[2025-11-30 13:39:34] 2025-11-30 18:39:33,781 [wrapper] cleanup supervisor_pilot 3454665 1092857
[2025-11-30 13:39:34] 2025-11-30 18:39:33,792 [wrapper] Test setup, not cleaning
[2025-11-30 13:39:34] 2025-11-30 18:39:33,796 [wrapper] apfmon messages muted
[2025-11-30 13:39:34] 2025-11-30 18:39:33,800 [wrapper] ==== wrapper stdout END ====
[2025-11-30 13:39:34] 2025-11-30 18:39:33,804 [wrapper] ==== wrapper stderr END ====
[2025-11-30 13:39:34]  *** Error codes and diagnostics ***
[2025-11-30 13:39:34]     "exeErrorCode": 0,
[2025-11-30 13:39:34]     "exeErrorDiag": "",
[2025-11-30 13:39:34]     "pilotErrorCode": 0,
[2025-11-30 13:39:34]     "pilotErrorDiag": "",
[2025-11-30 13:39:34]  *** Listing of results directory ***
[2025-11-30 13:39:34] total 1089772
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 05:28 pilot3.tar.gz
[2025-11-30 13:39:34] -rwx------. 1 boincer umatlas     36292 Nov 28 05:32 runpilot2-wrapper.sh
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 05:33 queuedata.json
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas       100 Nov 29 09:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 13:39:34] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 09:23 run_atlas
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas       105 Nov 29 09:23 job.xml
[2025-11-30 13:39:34] -rw-r--r--. 2 boincer umatlas 376344664 Nov 29 09:23 EVNT.47531050._000480.pool.root.1
[2025-11-30 13:39:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 09:23 start_atlas.sh
[2025-11-30 13:39:34] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 09:23 shared
[2025-11-30 13:39:34] -rw-r--r--. 2 boincer umatlas    590114 Nov 29 09:23 input.tar.gz
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas         0 Nov 29 09:23 boinc_lockfile
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas      2878 Nov 29 09:23 pandaJob.out
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas        57 Nov 29 09:23 setup.sh.local
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas    991826 Nov 29 09:23 agis_schedconf.cvmfs.json
[2025-11-30 13:39:34] drwx------. 5 boincer umatlas      4096 Nov 29 09:23 pilot3
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas       533 Nov 30 12:57 boinc_task_state.xml
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas      6663 Nov 30 13:36 init_data.xml
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas 703840072 Nov 30 13:37 HITS.47531058._000952.pool.root.1
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas      1065 Nov 30 13:38 memory_monitor_summary.json
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas   1516240 Nov 30 13:38 agis_ddmendpoints.agis.ALL.json
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas   2967733 Nov 30 13:38 log.47531058._000952.job.log.tgz.1
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas        95 Nov 30 13:38 pilot_heartbeat.json
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas     28373 Nov 30 13:38 heartbeat.json
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas      8192 Nov 30 13:39 boinc_mmap_file
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas        29 Nov 30 13:39 wrapper_checkpoint.txt
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas       822 Nov 30 13:39 pilotlog.txt
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas  12924828 Nov 30 13:39 log.47531058._000952.job.log.1
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas       353 Nov 30 13:39 output.list
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas       620 Nov 30 13:39 runtime_log
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas  15933440 Nov 30 13:39 result.tar.gz
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas      9346 Nov 30 13:39 runtime_log.err
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas       662 Nov 30 13:39 eWdLDmFxAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOhOKDmEZrcKn.diag
[2025-11-30 13:39:34] -rw-r--r--. 1 boincer umatlas     21741 Nov 30 13:39 stderr.txt
[2025-11-30 13:39:34] HITS file was successfully produced:
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas 703840072 Nov 30 13:37 shared/HITS.pool.root.1
[2025-11-30 13:39:34]  *** Contents of shared directory: ***
[2025-11-30 13:39:34] total 1071036
[2025-11-30 13:39:34] -rw-r--r--. 2 boincer umatlas 376344664 Nov 29 09:23 ATLAS.root_0
[2025-11-30 13:39:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 09:23 start_atlas.sh
[2025-11-30 13:39:34] -rw-r--r--. 2 boincer umatlas    590114 Nov 29 09:23 input.tar.gz
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas 703840072 Nov 30 13:37 HITS.pool.root.1
[2025-11-30 13:39:34] -rw-------. 1 boincer umatlas  15933440 Nov 30 13:39 result.tar.gz
13:39:36 (1087719): run_atlas exited; CPU time 260426.055000
13:39:36 (1087719): called boinc_finish(0)

</stderr_txt>
]]>

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