Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:28:09 (3870606): wrapper (7.7.26015): starting
02:28:09 (3870606): wrapper: running run_atlas (--nthreads 2)
[2025-12-02 02:28:09] Arguments: --nthreads 2
[2025-12-02 02:28:09] Threads: 2
[2025-12-02 02:28:09] Checking for CVMFS
[2025-12-02 02:28:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 02:28:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 02:28:09] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 02:28:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 02:28:09] 2.9.2.0 1656350 19074 64988 153539 3 81 33043607 36864001 0 130560 0 6139495 99.902 959340 1766 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-02 02:28:09] CVMFS is ok
[2025-12-02 02:28:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 02:28:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 02:28:09] Further information can be found at the LHC@home message board.
[2025-12-02 02:28:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 02:28:09] Checking for apptainer binary...
[2025-12-02 02:28:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 02:28:09] Running /usr/bin/apptainer --version
[2025-12-02 02:28:09] apptainer version 1.4.1-1.1
[2025-12-02 02:28:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 02:28:10] thA314b
[2025-12-02 02:28:10] apptainer works
[2025-12-02 02:28:10] Set ATHENA_PROC_NUMBER=2
[2025-12-02 02:28:10] Set ATHENA_CORE_NUMBER=2
[2025-12-02 02:28:10] Starting ATLAS job with PandaID=6897833960
[2025-12-02 02:28:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 12:59:23]  *** The last 200 lines of the pilot log: ***
[2025-12-02 12:59:23] 2025-12-02 11:58:51,863 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 12:59:23] 2025-12-02 11:58:51,863 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 12:59:23] 2025-12-02 11:58:52,282 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 12:59:23] 2025-12-02 11:58:52,283 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 12:59:23] 2025-12-02 11:58:52,283 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 12:59:23] 2025-12-02 11:58:52,283 | INFO     | will abort loop
[2025-12-02 12:59:23] 2025-12-02 11:58:52,712 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 12:59:23] 2025-12-02 11:58:52,819 | INFO     | all data control threads have been joined
[2025-12-02 12:59:23] 2025-12-02 11:58:52,869 | INFO     | [job] queue monitor thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:52,869 | INFO     | [job] retrieve thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:52,966 | INFO     | all job control threads have been joined
[2025-12-02 12:59:23] 2025-12-02 11:58:53,016 | INFO     | all payload control threads have been joined
[2025-12-02 12:59:23] 2025-12-02 11:58:53,290 | INFO     | [job] job monitor thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:53,377 | INFO     | [payload] failed_post thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:53,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:53,625 | INFO     | [data] copytool_in thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:53,825 | INFO     | [data] control thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:53,887 | INFO     | [payload] validate_post thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:53,913 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:53,972 | INFO     | [job] control thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:53,989 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:54,022 | INFO     | [payload] control thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:54,132 | INFO     | [job] validate thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:54,184 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:54,718 | INFO     | [data] copytool_out thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:58:55,870 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 12:59:23] 2025-12-02 11:59:17,060 | INFO     | [monitor] cgroup control has ended
[2025-12-02 12:59:23] 2025-12-02 11:59:17,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140162962401088)>', '<ExcThread(monitor, started 140162474428160)>']
[2025-12-02 12:59:23] 2025-12-02 11:59:22,097 | INFO     | PID=3874315 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 12:59:23] 2025-12-02 11:59:22,098 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 12:59:23] 2025-12-02 11:59:22,098 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 12:59:23] 2025-12-02 11:59:22,098 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 12:59:23] 2025-12-02 11:59:22,098 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 12:59:23] 2025-12-02 11:59:22,098 | INFO     | [monitor] control thread has ended
[2025-12-02 12:59:23] 2025-12-02 11:59:22,502 | INFO     | all workflow threads have been joined
[2025-12-02 12:59:23] 2025-12-02 11:59:22,502 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 12:59:23] 2025-12-02 11:59:22,503 | INFO     | traces error code: 0
[2025-12-02 12:59:23] 2025-12-02 11:59:22,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 12:59:23] 2025-12-02 11:59:22,544 [wrapper] ==== pilot stdout END ====
[2025-12-02 12:59:23] 2025-12-02 11:59:22,547 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 12:59:23] 2025-12-02 11:59:22,549 [wrapper] pilotpid: 3874315
[2025-12-02 12:59:23] 2025-12-02 11:59:22,552 [wrapper] Pilot exit status: 0
[2025-12-02 12:59:23] 2025-12-02 11:59:22,558 [wrapper] pandaids: 6897833960
[2025-12-02 12:59:23] 2025-12-02 11:59:22,567 [wrapper] cleanup supervisor_pilot 3946229 3874316
[2025-12-02 12:59:23] 2025-12-02 11:59:22,569 [wrapper] Test setup, not cleaning
[2025-12-02 12:59:23] 2025-12-02 11:59:22,571 [wrapper] apfmon messages muted
[2025-12-02 12:59:23] 2025-12-02 11:59:22,572 [wrapper] ==== wrapper stdout END ====
[2025-12-02 12:59:23] 2025-12-02 11:59:22,574 [wrapper] ==== wrapper stderr END ====
[2025-12-02 12:59:23]  *** Error codes and diagnostics ***
[2025-12-02 12:59:23]     "exeErrorCode": 0,
[2025-12-02 12:59:23]     "exeErrorDiag": "",
[2025-12-02 12:59:23]     "pilotErrorCode": 0,
[2025-12-02 12:59:23]     "pilotErrorDiag": "",
[2025-12-02 12:59:23]  *** Listing of results directory ***
[2025-12-02 12:59:23] total 1079584
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc    576529 Nov 28 11:28 pilot3.tar.gz
[2025-12-02 12:59:23] -rwx------ 1 boinc boinc     36292 Nov 28 11:32 runpilot2-wrapper.sh
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc      5112 Nov 28 11:33 queuedata.json
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc       100 Dec  2 02:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 12:59:23] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 02:28 run_atlas
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc       105 Dec  2 02:28 job.xml
[2025-12-02 12:59:23] -rw-r--r-- 2 boinc boinc 378050503 Dec  2 02:28 EVNT.47530775._000029.pool.root.1
[2025-12-02 12:59:23] -rw-r--r-- 2 boinc boinc    590120 Dec  2 02:28 input.tar.gz
[2025-12-02 12:59:23] drwxrwx--x 2 boinc boinc      4096 Dec  2 02:28 shared
[2025-12-02 12:59:23] -rw-r--r-- 2 boinc boinc     15847 Dec  2 02:28 start_atlas.sh
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc         0 Dec  2 02:28 boinc_setup_complete
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc      6208 Dec  2 02:28 init_data.xml
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc         0 Dec  2 02:28 boinc_lockfile
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc      2878 Dec  2 02:28 pandaJob.out
[2025-12-02 12:59:23] -rw------- 1 boinc boinc    992016 Dec  2 02:28 agis_schedconf.cvmfs.json
[2025-12-02 12:59:23] drwx------ 5 boinc boinc      4096 Dec  2 02:28 pilot3
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc       532 Dec  2 12:55 boinc_task_state.xml
[2025-12-02 12:59:23] -rw------- 1 boinc boinc 710439409 Dec  2 12:58 HITS.47530783._000289.pool.root.1
[2025-12-02 12:59:23] -rw------- 1 boinc boinc      1022 Dec  2 12:58 memory_monitor_summary.json
[2025-12-02 12:59:23] -rw------- 1 boinc boinc   1516240 Dec  2 12:58 agis_ddmendpoints.agis.ALL.json
[2025-12-02 12:59:23] -rw------- 1 boinc boinc   1218818 Dec  2 12:58 log.47530783._000289.job.log.tgz.1
[2025-12-02 12:59:23] -rw------- 1 boinc boinc     27367 Dec  2 12:58 heartbeat.json
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc      8192 Dec  2 12:59 boinc_mmap_file
[2025-12-02 12:59:23] -rw------- 1 boinc boinc        95 Dec  2 12:59 pilot_heartbeat.json
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc        28 Dec  2 12:59 wrapper_checkpoint.txt
[2025-12-02 12:59:23] -rw------- 1 boinc boinc      4938 Dec  2 12:59 pilotlog.txt
[2025-12-02 12:59:23] -rw------- 1 boinc boinc   5312094 Dec  2 12:59 log.47530783._000289.job.log.1
[2025-12-02 12:59:23] -rw------- 1 boinc boinc       353 Dec  2 12:59 output.list
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc       620 Dec  2 12:59 runtime_log
[2025-12-02 12:59:23] -rw------- 1 boinc boinc   6574080 Dec  2 12:59 result.tar.gz
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc      8903 Dec  2 12:59 runtime_log.err
[2025-12-02 12:59:23] -rw------- 1 boinc boinc       666 Dec  2 12:59 JrjKDmFxAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdgOKDmaYGNjm.diag
[2025-12-02 12:59:23] -rw-r--r-- 1 boinc boinc      7427 Dec  2 12:59 stderr.txt
[2025-12-02 12:59:23] HITS file was successfully produced:
[2025-12-02 12:59:23] -rw------- 1 boinc boinc 710439409 Dec  2 12:58 shared/HITS.pool.root.1
[2025-12-02 12:59:23]  *** Contents of shared directory: ***
[2025-12-02 12:59:23] total 1070008
[2025-12-02 12:59:23] -rw-r--r-- 2 boinc boinc 378050503 Dec  2 02:28 ATLAS.root_0
[2025-12-02 12:59:23] -rw-r--r-- 2 boinc boinc    590120 Dec  2 02:28 input.tar.gz
[2025-12-02 12:59:23] -rw-r--r-- 2 boinc boinc     15847 Dec  2 02:28 start_atlas.sh
[2025-12-02 12:59:23] -rw------- 1 boinc boinc 710439409 Dec  2 12:58 HITS.pool.root.1
[2025-12-02 12:59:23] -rw------- 1 boinc boinc   6574080 Dec  2 12:59 result.tar.gz
12:59:25 (3870606): run_atlas exited; CPU time 74752.806768
12:59:25 (3870606): called boinc_finish(0)

</stderr_txt>
]]>

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