Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:11:24 (3112522): wrapper (7.7.26015): starting
02:11:24 (3112522): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 02:11:24] Arguments: --nthreads 12
[2025-11-29 02:11:24] Threads: 12
[2025-11-29 02:11:24] Checking for CVMFS
[2025-11-29 02:11:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 02:11:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 02:11:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 02:11:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 02:11:26] 2.11.5.0 3953955 32469 154688 153437 3 370 37785798 45568000 20181 130560 0 298382718 99.799 176705918 27803 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-29 02:11:26] CVMFS is ok
[2025-11-29 02:11:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 02:11:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 02:11:26] Further information can be found at the LHC@home message board.
[2025-11-29 02:11:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 02:11:26] Checking for apptainer binary...
[2025-11-29 02:11:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 02:11:26] Running /usr/bin/apptainer --version
[2025-11-29 02:11:26] apptainer version 1.4.1-1.el9
[2025-11-29 02:11:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 02:11:27] wns0046.triumf.lcg
[2025-11-29 02:11:27] apptainer works
[2025-11-29 02:11:27] Set ATHENA_PROC_NUMBER=12
[2025-11-29 02:11:27] Set ATHENA_CORE_NUMBER=12
[2025-11-29 02:11:27] Starting ATLAS job with PandaID=6895232996
[2025-11-29 02:11:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 02:19:17]  *** The last 200 lines of the pilot log: ***
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | could have reported an average CPU frequency of 2696 MHz (4 samples)
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | ..............................
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . Timing measurements:
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . get job = 0 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . initial setup = 4 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . payload setup = 38 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . stage-in = 0 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . payload execution = 152 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . stage-out = 1 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . log creation = 0 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | ..............................
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895232996/pilotlog.txt
[2025-11-29 02:19:17] 2025-11-29 10:18:21,878 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-29 02:19:17] - Log from pilotlog.txt -
[2025-11-29 02:19:17] 2025-11-29 10:18:21,815 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895232996/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 02:19:17] 2025-11-29 10:18:21,816 | INFO     | extracted standard info from prmon json
[2025-11-29 02:19:17] 2025-11-29 10:18:21,816 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 02:19:17] 2025-11-29 10:18:21,816 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 02:19:17] 2025-11-29 10:18:21,822 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 02:19:17] 2025-11-29 10:18:21,823 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 02:19:17] 2025-11-29 10:18:21,823 | WARNING  | wrong length of table data, x=[1764411230.0, 1764411291.0, 1764411352.0], y=[1450.0, 636893.0, 710497.0] (must be same and length>=4)
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | could have reported an average CPU frequency of 2696 MHz (4 samples)
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | ..............................
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . Timing measurements:
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . get job = 0 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . initial setup = 4 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . payload setup = 38 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . stage-in = 0 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . payload execution = 152 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . stage-out = 1 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . log creation = 0 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | ..............................
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895232996/pilotlog.txt
[2025-11-29 02:19:17] 2025-11-29 10:18:21,878 | WARNING  | 
[2025-11-29 02:19:17] [begin log extracts]
[2025-11-29 02:19:17] - Log from pilotlog.txt -
[2025-11-29 02:19:17] 2025-11-29 10:18:21,815 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895232996/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 02:19:17] 2025-11-29 10:18:21,816 | INFO     | extracted standard info from prmon json
[2025-11-29 02:19:17] 2025-11-29 10:18:21,816 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 02:19:17] 2025-11-29 10:18:21,816 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 02:19:17] 2025-11-29 10:18:21,822 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 02:19:17] 2025-11-29 10:18:21,823 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 02:19:17] 2025-11-29 10:18:21,823 | WARNING  | wrong length of table data, x=[1764411230.0, 1764411291.0, 1764411352.0], y=[1450.0, 636893.0, 710497.0] (must be same and length>=4)
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | could have reported an average CPU frequency of 2696 MHz (4 samples)
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | ..............................
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . Timing measurements:
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . get job = 0 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . initial setup = 4 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . payload setup = 38 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . stage-in = 0 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . payload execution = 152 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . stage-out = 1 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | . log creation = 0 s
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | ..............................
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 02:19:17] 2025-11-29 10:18:21,824 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895232996/pilotlog.txt
[2025-11-29 02:19:17] [end log extracts]
[2025-11-29 02:19:17] 2025-11-29 10:18:21,878 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-29 02:19:17] 2025-11-29 10:18:21,879 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-29 02:19:17] 2025-11-29 10:18:22,141 | INFO     | 
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | job summary report
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | --------------------------------------------------
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | PanDA job id: 6895232996
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | task id: 47538113
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-29 02:15:56,661 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | pilot state: failed 
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | transexitcode: 65
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | exeerrorcode: 65
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | exitcode: 65
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | cpuconsumptiontime: 61 s
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | nevents: 0
[2025-11-29 02:19:17] 2025-11-29 10:18:22,143 | INFO     | neventsw: 0
[2025-11-29 02:19:17] 2025-11-29 10:18:22,144 | INFO     | pid: 3123959
[2025-11-29 02:19:17] 2025-11-29 10:18:22,144 | INFO     | pgrp: 3123959
[2025-11-29 02:19:17] 2025-11-29 10:18:22,144 | INFO     | corecount: 12
[2025-11-29 02:19:17] 2025-11-29 10:18:22,145 | INFO     | event service: False
[2025-11-29 02:19:17] 2025-11-29 10:18:22,145 | INFO     | sizes: {0: 2284452, 11: 2284452, 18: 2284742, 23: 2284770, 192: 2308332, 194: 2312622, 197: 2312778, 332: 2312944}
[2025-11-29 02:19:17] 2025-11-29 10:18:22,145 | INFO     | --------------------------------------------------
[2025-11-29 02:19:17] 2025-11-29 10:18:22,145 | INFO     | 
[2025-11-29 02:19:17] 2025-11-29 10:18:22,145 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-29 02:19:17] 2025-11-29 10:18:22,226 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,226 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,226 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,226 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,227 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,227 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,227 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,227 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,227 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,227 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,227 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,227 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,227 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,228 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,228 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,228 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,228 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,228 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 02:19:17] 2025-11-29 10:18:22,228 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,228 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 02:19:17] 2025-11-29 10:18:22,228 | INFO     | job 6895232996 has completed (purged errors)
[2025-11-29 02:19:17] 2025-11-29 10:18:22,241 | INFO     | overall cleanup function is called
[2025-11-29 02:19:17] 2025-11-29 10:18:23,250 | INFO     | PID=3116369 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 02:19:17] 2025-11-29 10:18:23,250 | INFO     | .. there are 42 such processes running
[2025-11-29 02:19:17] 2025-11-29 10:18:23,252 | INFO     | --- collectZombieJob: --- 10, [3123959]
[2025-11-29 02:19:17] 2025-11-29 10:18:23,252 | INFO     | zombie collector waiting for pid 3123959
[2025-11-29 02:19:17] 2025-11-29 10:18:23,253 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 02:19:17] 2025-11-29 10:18:23,253 | INFO     | collected zombie processes
[2025-11-29 02:19:17] 2025-11-29 10:18:23,253 | INFO     | will attempt to kill all subprocesses of pid=3123959
[2025-11-29 02:19:17] 2025-11-29 10:18:23,763 | INFO     | process IDs to be killed: [3123959] (in reverse order)
[2025-11-29 02:19:17] 2025-11-29 10:18:24,081 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 02:19:17] 2025-11-29 10:18:24,081 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 02:19:17] 2025-11-29 10:18:24,127 | INFO     | did not find any defunct processes belonging to 3123959
[2025-11-29 02:19:17] 2025-11-29 10:18:24,168 | INFO     | did not find any defunct processes belonging to 3123959
[2025-11-29 02:19:17] 2025-11-29 10:18:24,169 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 02:19:17] 2025-11-29 10:18:24,169 | INFO     | ready for new job
[2025-11-29 02:19:17] 2025-11-29 10:18:24,170 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 02:19:17] 2025-11-29 10:18:24,186 | INFO     | ***************************************
[2025-11-29 02:19:17] 2025-11-29 10:18:24,186 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 02:19:17] 2025-11-29 10:18:24,186 | INFO     | ***************************************
[2025-11-29 02:19:17] 2025-11-29 10:18:24,186 | INFO     | 
[2025-11-29 02:19:17] 2025-11-29 10:18:24,188 | INFO     | architecture information:
[2025-11-29 02:19:17] 2025-11-29 10:18:24,203 | INFO     | executing command: cat /etc/os-release
[2025-11-29 02:19:17] 2025-11-29 10:18:24,250 | INFO     | cat /etc/os-release:
[2025-11-29 02:19:17] NAME="CentOS Linux"
[2025-11-29 02:19:17] VERSION="7 (Core)"
[2025-11-29 02:19:17] ID="centos"
[2025-11-29 02:19:17] ID_LIKE="rhel fedora"
[2025-11-29 02:19:17] VERSION_ID="7"
[2025-11-29 02:19:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 02:19:17] ANSI_COLOR="0;31"
[2025-11-29 02:19:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 02:19:17] HOME_URL="https://www.centos.org/"
[2025-11-29 02:19:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 02:19:17] 
[2025-11-29 02:19:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 02:19:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 02:19:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 02:19:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 02:19:17] 
[2025-11-29 02:19:17] 2025-11-29 10:18:24,250 | INFO     | ***************************************
[2025-11-29 02:19:17] 2025-11-29 10:18:24,754 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-29 02:19:17] 2025-11-29 10:18:24,885 | INFO     | sufficient remaining disk space (2017755922432 B)
[2025-11-29 02:19:17] 2025-11-29 10:18:24,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 02:19:17] 2025-11-29 10:18:24,885 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 02:19:17] 2025-11-29 10:18:24,885 | INFO     | update_server=False
[2025-11-29 02:19:17] 2025-11-29 10:18:24,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 02:19:17] 2025-11-29 10:18:24,885 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 02:19:17] 2025-11-29 10:18:24,886 | INFO     | aborting loop
[2025-11-29 02:19:17] 2025-11-29 10:18:24,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 02:19:17] 2025-11-29 10:18:25,048 | INFO     | all job control threads have been joined
[2025-11-29 02:19:17] 2025-11-29 10:18:25,317 | INFO     | all data control threads have been joined
[2025-11-29 02:19:17] 2025-11-29 10:18:25,333 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 02:19:17] 2025-11-29 10:18:25,722 | INFO     | all payload control threads have been joined
[2025-11-29 02:19:17] 2025-11-29 10:18:25,904 | INFO     | [job] job monitor thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:25,905 | INFO     | [job] retrieve thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:25,981 | INFO     | [job] validate thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:25,998 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:26,053 | INFO     | [job] control thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:26,141 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:26,324 | INFO     | [data] control thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:26,427 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:26,448 | INFO     | [payload] validate_post thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:26,681 | INFO     | [payload] failed_post thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:26,728 | INFO     | [payload] control thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:26,819 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:27,161 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 02:19:17] 2025-11-29 10:18:27,343 | INFO     | [data] copytool_out thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:27,348 | INFO     | [data] copytool_in thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:28,167 | INFO     | [job] queue monitor thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:28,894 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 02:19:17] 2025-11-29 10:18:56,019 | INFO     | PID=3116369 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 02:19:17] 2025-11-29 10:18:56,020 | INFO     | .. there are 42 such processes running
[2025-11-29 02:19:17] 2025-11-29 10:18:56,021 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 02:19:17] 2025-11-29 10:18:56,021 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 02:19:17] 2025-11-29 10:18:56,021 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 02:19:17] 2025-11-29 10:19:09,753 | INFO     | [monitor] cgroup control has ended
[2025-11-29 02:19:17] 2025-11-29 10:19:10,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140039892621120)>', '<ExcThread(monitor, started 140039572920064)>']
[2025-11-29 02:19:17] 2025-11-29 10:19:11,120 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 02:19:17] 2025-11-29 10:19:11,120 | INFO     | [monitor] control thread has ended
[2025-11-29 02:19:17] 2025-11-29 10:19:15,792 | INFO     | all workflow threads have been joined
[2025-11-29 02:19:17] 2025-11-29 10:19:15,793 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 02:19:17] 2025-11-29 10:19:15,794 | INFO     | traces error code: 0
[2025-11-29 02:19:17] 2025-11-29 10:19:15,795 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 02:19:17] 2025-11-29 10:19:16,140 [wrapper] ==== pilot stdout END ====
[2025-11-29 02:19:17] 2025-11-29 10:19:16,156 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 02:19:17] 2025-11-29 10:19:16,197 [wrapper] pilotpid: 3116369
[2025-11-29 02:19:17] 2025-11-29 10:19:16,215 [wrapper] Pilot exit status: 0
[2025-11-29 02:19:17] 2025-11-29 10:19:16,316 [wrapper] pandaids: 6895232996
[2025-11-29 02:19:17] 2025-11-29 10:19:16,700 [wrapper] cleanup supervisor_pilot 3116375 3116370
[2025-11-29 02:19:17] 2025-11-29 10:19:16,713 [wrapper] Test setup, not cleaning
[2025-11-29 02:19:17] 2025-11-29 10:19:16,746 [wrapper] apfmon messages muted
[2025-11-29 02:19:17] 2025-11-29 10:19:16,763 [wrapper] ==== wrapper stdout END ====
[2025-11-29 02:19:17] 2025-11-29 10:19:16,778 [wrapper] ==== wrapper stderr END ====
[2025-11-29 02:19:17]  *** Error codes and diagnostics ***
[2025-11-29 02:19:17]     "exeErrorCode": 65,
[2025-11-29 02:19:17]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-29 02:19:17]     "pilotErrorCode": 1305,
[2025-11-29 02:19:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-29 02:19:17]  *** Listing of results directory ***
[2025-11-29 02:19:17] total 371756
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc    576529 Nov 28 02:28 pilot3.tar.gz
[2025-11-29 02:19:17] -rwx------. 1 boinc boinc     36292 Nov 28 02:31 runpilot2-wrapper.sh
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc      5112 Nov 28 02:33 queuedata.json
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc       100 Nov 29 02:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 02:19:17] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 02:11 run_atlas
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc       105 Nov 29 02:11 job.xml
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc      6596 Nov 29 02:11 init_data.xml
[2025-11-29 02:19:17] -rw-r--r--. 2 boinc boinc 376435876 Nov 29 02:11 EVNT.47528871._000142.pool.root.1
[2025-11-29 02:19:17] -rw-r--r--. 2 boinc boinc     15847 Nov 29 02:11 start_atlas.sh
[2025-11-29 02:19:17] drwxrwx--x. 2 boinc boinc      4096 Nov 29 02:11 shared
[2025-11-29 02:19:17] -rw-r--r--. 2 boinc boinc    590126 Nov 29 02:11 input.tar.gz
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc         0 Nov 29 02:11 boinc_lockfile
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc      2882 Nov 29 02:11 pandaJob.out
[2025-11-29 02:19:17] -rw-------. 1 boinc boinc    991834 Nov 29 02:12 agis_schedconf.cvmfs.json
[2025-11-29 02:19:17] -rw-------. 1 boinc boinc   1516240 Nov 29 02:12 agis_ddmendpoints.agis.ALL.json
[2025-11-29 02:19:17] drwx------. 5 boinc boinc      4096 Nov 29 02:12 pilot3
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc       525 Nov 29 02:15 boinc_task_state.xml
[2025-11-29 02:19:17] -rw-------. 1 boinc boinc      1001 Nov 29 02:16 memory_monitor_summary.json
[2025-11-29 02:19:17] -rw-------. 1 boinc boinc     51863 Nov 29 02:16 log.47538113._001415.job.log.tgz.1
[2025-11-29 02:19:17] -rw-------. 1 boinc boinc        95 Nov 29 02:18 pilot_heartbeat.json
[2025-11-29 02:19:17] -rw-------. 1 boinc boinc      9899 Nov 29 02:18 heartbeat.json
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc      8192 Nov 29 02:19 boinc_mmap_file
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc        23 Nov 29 02:19 wrapper_checkpoint.txt
[2025-11-29 02:19:17] -rw-------. 1 boinc boinc      4823 Nov 29 02:19 pilotlog.txt
[2025-11-29 02:19:17] -rw-------. 1 boinc boinc    111827 Nov 29 02:19 log.47538113._001415.job.log.1
[2025-11-29 02:19:17] -rw-------. 1 boinc boinc       186 Nov 29 02:19 output.list
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc       620 Nov 29 02:19 runtime_log
[2025-11-29 02:19:17] -rw-------. 1 boinc boinc    184320 Nov 29 02:19 result.tar.gz
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc      8636 Nov 29 02:19 runtime_log.err
[2025-11-29 02:19:17] -rw-------. 1 boinc boinc       647 Nov 29 02:19 pWbNDmMwAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6NLKDmxvFI6n.diag
[2025-11-29 02:19:17] -rw-r--r--. 1 boinc boinc     22588 Nov 29 02:19 stderr.txt
[2025-11-29 02:19:17] No HITS result produced
[2025-11-29 02:19:17]  *** Contents of shared directory: ***
[2025-11-29 02:19:17] total 368396
[2025-11-29 02:19:17] -rw-r--r--. 2 boinc boinc 376435876 Nov 29 02:11 ATLAS.root_0
[2025-11-29 02:19:17] -rw-r--r--. 2 boinc boinc     15847 Nov 29 02:11 start_atlas.sh
[2025-11-29 02:19:17] -rw-r--r--. 2 boinc boinc    590126 Nov 29 02:11 input.tar.gz
[2025-11-29 02:19:17] -rw-------. 1 boinc boinc    184320 Nov 29 02:19 result.tar.gz
02:19:18 (3112522): run_atlas exited; CPU time 67.148413
02:19:18 (3112522): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN