Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:21:32 (3967823): wrapper (7.7.26015): starting
02:21:32 (3967823): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 02:21:32] Arguments: --nthreads 12
[2025-11-29 02:21:32] Threads: 12
[2025-11-29 02:21:32] Checking for CVMFS
[2025-11-29 02:21:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 02:21:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 02:21:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 02:21:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 02:21:34] 2.11.5.0 4138901 32447 233644 153439 2 67 44028244 45568000 20211 130560 0 306051932 99.766 206995497 26699 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-29 02:21:34] CVMFS is ok
[2025-11-29 02:21:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 02:21:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 02:21:34] Further information can be found at the LHC@home message board.
[2025-11-29 02:21:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 02:21:34] Checking for apptainer binary...
[2025-11-29 02:21:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 02:21:34] Running /usr/bin/apptainer --version
[2025-11-29 02:21:34] apptainer version 1.4.1-1.el9
[2025-11-29 02:21:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 02:21:35] wns0087.triumf.lcg
[2025-11-29 02:21:35] apptainer works
[2025-11-29 02:21:35] Set ATHENA_PROC_NUMBER=12
[2025-11-29 02:21:35] Set ATHENA_CORE_NUMBER=12
[2025-11-29 02:21:36] Starting ATLAS job with PandaID=6895234472
[2025-11-29 02:21:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 02:30:32]  *** The last 200 lines of the pilot log: ***
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | could have reported an average CPU frequency of 2758 MHz (4 samples)
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | ..............................
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . Timing measurements:
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . get job = 0 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . initial setup = 4 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . payload setup = 54 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . stage-in = 0 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . payload execution = 168 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . stage-out = 0 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . log creation = 0 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,559 | INFO     | ..............................
[2025-11-29 02:30:32] 2025-11-29 10:29:28,559 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 02:30:32] 2025-11-29 10:29:28,559 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895234472/pilotlog.txt
[2025-11-29 02:30:32] 2025-11-29 10:29:28,570 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-29 02:30:32] - Log from pilotlog.txt -
[2025-11-29 02:30:32] 2025-11-29 10:29:28,556 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895234472/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 02:30:32] 2025-11-29 10:29:28,556 | INFO     | extracted standard info from prmon json
[2025-11-29 02:30:32] 2025-11-29 10:29:28,556 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 02:30:32] 2025-11-29 10:29:28,556 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 02:30:32] 2025-11-29 10:29:28,557 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 02:30:32] 2025-11-29 10:29:28,557 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 02:30:32] 2025-11-29 10:29:28,557 | WARNING  | wrong length of table data, x=[1764411882.0, 1764411943.0, 1764412004.0], y=[1899.0, 509508.0, 741839.0] (must be same and length>=4)
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | could have reported an average CPU frequency of 2758 MHz (4 samples)
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | ..............................
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . Timing measurements:
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . get job = 0 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . initial setup = 4 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . payload setup = 54 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . stage-in = 0 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . payload execution = 168 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . stage-out = 0 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . log creation = 0 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,559 | INFO     | ..............................
[2025-11-29 02:30:32] 2025-11-29 10:29:28,559 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 02:30:32] 2025-11-29 10:29:28,559 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895234472/pilotlog.txt
[2025-11-29 02:30:32] 2025-11-29 10:29:28,570 | WARNING  | 
[2025-11-29 02:30:32] [begin log extracts]
[2025-11-29 02:30:32] - Log from pilotlog.txt -
[2025-11-29 02:30:32] 2025-11-29 10:29:28,556 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895234472/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 02:30:32] 2025-11-29 10:29:28,556 | INFO     | extracted standard info from prmon json
[2025-11-29 02:30:32] 2025-11-29 10:29:28,556 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 02:30:32] 2025-11-29 10:29:28,556 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 02:30:32] 2025-11-29 10:29:28,557 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 02:30:32] 2025-11-29 10:29:28,557 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 02:30:32] 2025-11-29 10:29:28,557 | WARNING  | wrong length of table data, x=[1764411882.0, 1764411943.0, 1764412004.0], y=[1899.0, 509508.0, 741839.0] (must be same and length>=4)
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | could have reported an average CPU frequency of 2758 MHz (4 samples)
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | ..............................
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . Timing measurements:
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . get job = 0 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . initial setup = 4 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . payload setup = 54 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . stage-in = 0 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . payload execution = 168 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . stage-out = 0 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,558 | INFO     | . log creation = 0 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,559 | INFO     | ..............................
[2025-11-29 02:30:32] 2025-11-29 10:29:28,559 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 02:30:32] 2025-11-29 10:29:28,559 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895234472/pilotlog.txt
[2025-11-29 02:30:32] [end log extracts]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,570 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-29 02:30:32] 2025-11-29 10:29:28,571 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-29 02:30:32] 2025-11-29 10:29:28,744 | INFO     | 
[2025-11-29 02:30:32] 2025-11-29 10:29:28,745 | INFO     | job summary report
[2025-11-29 02:30:32] 2025-11-29 10:29:28,745 | INFO     | --------------------------------------------------
[2025-11-29 02:30:32] 2025-11-29 10:29:28,745 | INFO     | PanDA job id: 6895234472
[2025-11-29 02:30:32] 2025-11-29 10:29:28,745 | INFO     | task id: 47530725
[2025-11-29 02:30:32] 2025-11-29 10:29:28,745 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-29 02:26:55,836 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-29 02:30:32] 2025-11-29 10:29:28,745 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | pilot state: failed 
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | transexitcode: 65
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | exeerrorcode: 65
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | exitcode: 65
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | cpuconsumptiontime: 61 s
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | nevents: 0
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | neventsw: 0
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | pid: 3979666
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | pgrp: 3979666
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | corecount: 12
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | event service: False
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | sizes: {0: 2284288, 1: 2284487, 2: 2284487, 13: 2284515, 22: 2284833, 24: 2284861, 226: 2308651, 227: 2312941, 230: 2312969, 371: 2313135}
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | --------------------------------------------------
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | 
[2025-11-29 02:30:32] 2025-11-29 10:29:28,746 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-29 02:30:32] 2025-11-29 10:29:28,810 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,811 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,812 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,812 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,812 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,812 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 02:30:32] 2025-11-29 10:29:28,812 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,812 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 02:30:32] 2025-11-29 10:29:28,812 | INFO     | job 6895234472 has completed (purged errors)
[2025-11-29 02:30:32] 2025-11-29 10:29:28,812 | INFO     | overall cleanup function is called
[2025-11-29 02:30:32] 2025-11-29 10:29:29,875 | INFO     | --- collectZombieJob: --- 10, [3979666]
[2025-11-29 02:30:32] 2025-11-29 10:29:29,875 | INFO     | zombie collector waiting for pid 3979666
[2025-11-29 02:30:32] 2025-11-29 10:29:29,875 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 02:30:32] 2025-11-29 10:29:29,875 | INFO     | collected zombie processes
[2025-11-29 02:30:32] 2025-11-29 10:29:29,875 | INFO     | will attempt to kill all subprocesses of pid=3979666
[2025-11-29 02:30:32] 2025-11-29 10:29:30,964 | INFO     | PID=3971802 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 02:30:32] 2025-11-29 10:29:30,964 | INFO     | .. there are 42 such processes running
[2025-11-29 02:30:32] 2025-11-29 10:29:31,211 | INFO     | process IDs to be killed: [3979666] (in reverse order)
[2025-11-29 02:30:32] 2025-11-29 10:29:31,545 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 02:30:32] 2025-11-29 10:29:31,546 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 02:30:32] 2025-11-29 10:29:31,668 | INFO     | did not find any defunct processes belonging to 3979666
[2025-11-29 02:30:32] 2025-11-29 10:29:31,732 | INFO     | did not find any defunct processes belonging to 3979666
[2025-11-29 02:30:32] 2025-11-29 10:29:31,733 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 02:30:32] 2025-11-29 10:29:31,733 | INFO     | ready for new job
[2025-11-29 02:30:32] 2025-11-29 10:29:31,734 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 02:30:32] 2025-11-29 10:29:31,780 | INFO     | ***************************************
[2025-11-29 02:30:32] 2025-11-29 10:29:31,780 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 02:30:32] 2025-11-29 10:29:31,780 | INFO     | ***************************************
[2025-11-29 02:30:32] 2025-11-29 10:29:31,780 | INFO     | 
[2025-11-29 02:30:32] 2025-11-29 10:29:31,803 | INFO     | architecture information:
[2025-11-29 02:30:32] 2025-11-29 10:29:31,830 | INFO     | executing command: cat /etc/os-release
[2025-11-29 02:30:32] 2025-11-29 10:29:31,869 | INFO     | cat /etc/os-release:
[2025-11-29 02:30:32] NAME="CentOS Linux"
[2025-11-29 02:30:32] VERSION="7 (Core)"
[2025-11-29 02:30:32] ID="centos"
[2025-11-29 02:30:32] ID_LIKE="rhel fedora"
[2025-11-29 02:30:32] VERSION_ID="7"
[2025-11-29 02:30:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 02:30:32] ANSI_COLOR="0;31"
[2025-11-29 02:30:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 02:30:32] HOME_URL="https://www.centos.org/"
[2025-11-29 02:30:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 02:30:32] 
[2025-11-29 02:30:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 02:30:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 02:30:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 02:30:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 02:30:32] 
[2025-11-29 02:30:32] 2025-11-29 10:29:31,870 | INFO     | ***************************************
[2025-11-29 02:30:32] 2025-11-29 10:29:32,373 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-29 02:30:32] 2025-11-29 10:29:32,431 | INFO     | sufficient remaining disk space (2005154136064 B)
[2025-11-29 02:30:32] 2025-11-29 10:29:32,432 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 02:30:32] 2025-11-29 10:29:32,432 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 02:30:32] 2025-11-29 10:29:32,432 | INFO     | update_server=False
[2025-11-29 02:30:32] 2025-11-29 10:29:32,432 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 02:30:32] 2025-11-29 10:29:32,608 | INFO     | all job control threads have been joined
[2025-11-29 02:30:32] 2025-11-29 10:29:33,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 02:30:32] 2025-11-29 10:29:33,224 | INFO     | aborting loop
[2025-11-29 02:30:32] 2025-11-29 10:29:33,438 | INFO     | [job] retrieve thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:33,507 | INFO     | all data control threads have been joined
[2025-11-29 02:30:32] 2025-11-29 10:29:33,604 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 02:30:32] 2025-11-29 10:29:33,615 | INFO     | [job] control thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:33,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 02:30:32] 2025-11-29 10:29:33,710 | INFO     | all payload control threads have been joined
[2025-11-29 02:30:32] 2025-11-29 10:29:33,787 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:33,855 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:33,972 | INFO     | [payload] validate_post thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:34,230 | INFO     | [job] job monitor thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:34,350 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 02:30:32] 2025-11-29 10:29:34,513 | INFO     | [data] control thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:34,616 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:34,620 | INFO     | [data] copytool_in thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:34,700 | INFO     | [job] queue monitor thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:34,716 | INFO     | [payload] control thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:34,846 | INFO     | [job] validate thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:34,898 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:35,024 | INFO     | [payload] failed_post thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:35,614 | INFO     | [data] copytool_out thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:29:38,368 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 02:30:32] 2025-11-29 10:30:03,365 | INFO     | PID=3971802 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 02:30:32] 2025-11-29 10:30:03,365 | INFO     | .. there are 42 such processes running
[2025-11-29 02:30:32] 2025-11-29 10:30:03,365 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 02:30:32] 2025-11-29 10:30:03,365 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 02:30:32] 2025-11-29 10:30:03,365 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 02:30:32] 2025-11-29 10:30:26,305 | INFO     | [monitor] cgroup control has ended
[2025-11-29 02:30:32] 2025-11-29 10:30:26,527 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139837317936960)>', '<ExcThread(monitor, started 139836451174144)>']
[2025-11-29 02:30:32] 2025-11-29 10:30:27,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 02:30:32] 2025-11-29 10:30:27,516 | INFO     | [monitor] control thread has ended
[2025-11-29 02:30:32] 2025-11-29 10:30:31,553 | INFO     | all workflow threads have been joined
[2025-11-29 02:30:32] 2025-11-29 10:30:31,553 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 02:30:32] 2025-11-29 10:30:31,553 | INFO     | traces error code: 0
[2025-11-29 02:30:32] 2025-11-29 10:30:31,554 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 02:30:32] 2025-11-29 10:30:31,890 [wrapper] ==== pilot stdout END ====
[2025-11-29 02:30:32] 2025-11-29 10:30:31,892 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 02:30:32] 2025-11-29 10:30:31,893 [wrapper] pilotpid: 3971802
[2025-11-29 02:30:32] 2025-11-29 10:30:31,895 [wrapper] Pilot exit status: 0
[2025-11-29 02:30:32] 2025-11-29 10:30:31,937 [wrapper] pandaids: 6895234472
[2025-11-29 02:30:32] 2025-11-29 10:30:32,010 [wrapper] cleanup supervisor_pilot 3971808 3971803
[2025-11-29 02:30:32] 2025-11-29 10:30:32,044 [wrapper] Test setup, not cleaning
[2025-11-29 02:30:32] 2025-11-29 10:30:32,057 [wrapper] apfmon messages muted
[2025-11-29 02:30:32] 2025-11-29 10:30:32,071 [wrapper] ==== wrapper stdout END ====
[2025-11-29 02:30:32] 2025-11-29 10:30:32,108 [wrapper] ==== wrapper stderr END ====
[2025-11-29 02:30:32]  *** Error codes and diagnostics ***
[2025-11-29 02:30:32]     "exeErrorCode": 65,
[2025-11-29 02:30:32]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-29 02:30:32]     "pilotErrorCode": 1305,
[2025-11-29 02:30:32]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-29 02:30:32]  *** Listing of results directory ***
[2025-11-29 02:30:32] total 370660
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc    576529 Nov 28 02:28 pilot3.tar.gz
[2025-11-29 02:30:32] -rwx------. 1 boinc boinc     36292 Nov 28 02:31 runpilot2-wrapper.sh
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc      5112 Nov 28 02:33 queuedata.json
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc       100 Nov 29 02:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 02:30:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 02:21 run_atlas
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc       105 Nov 29 02:21 job.xml
[2025-11-29 02:30:32] -rw-r--r--. 2 boinc boinc 375308564 Nov 29 02:21 EVNT.47530720._000134.pool.root.1
[2025-11-29 02:30:32] -rw-r--r--. 2 boinc boinc    590118 Nov 29 02:21 input.tar.gz
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc      6596 Nov 29 02:21 init_data.xml
[2025-11-29 02:30:32] -rw-r--r--. 2 boinc boinc     15847 Nov 29 02:21 start_atlas.sh
[2025-11-29 02:30:32] drwxrwx--x. 2 boinc boinc      4096 Nov 29 02:21 shared
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc         0 Nov 29 02:21 boinc_lockfile
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc      2889 Nov 29 02:21 pandaJob.out
[2025-11-29 02:30:32] -rw-------. 1 boinc boinc    991834 Nov 29 02:22 agis_schedconf.cvmfs.json
[2025-11-29 02:30:32] -rw-------. 1 boinc boinc   1516240 Nov 29 02:22 agis_ddmendpoints.agis.ALL.json
[2025-11-29 02:30:32] drwx------. 5 boinc boinc      4096 Nov 29 02:22 pilot3
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc       524 Nov 29 02:26 boinc_task_state.xml
[2025-11-29 02:30:32] -rw-------. 1 boinc boinc      1000 Nov 29 02:27 memory_monitor_summary.json
[2025-11-29 02:30:32] -rw-------. 1 boinc boinc     51014 Nov 29 02:27 log.47530725._001333.job.log.tgz.1
[2025-11-29 02:30:32] -rw-------. 1 boinc boinc      9884 Nov 29 02:29 heartbeat.json
[2025-11-29 02:30:32] -rw-------. 1 boinc boinc        95 Nov 29 02:29 pilot_heartbeat.json
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc      8192 Nov 29 02:30 boinc_mmap_file
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc        23 Nov 29 02:30 wrapper_checkpoint.txt
[2025-11-29 02:30:32] -rw-------. 1 boinc boinc      4823 Nov 29 02:30 pilotlog.txt
[2025-11-29 02:30:32] -rw-------. 1 boinc boinc    116503 Nov 29 02:30 log.47530725._001333.job.log.1
[2025-11-29 02:30:32] -rw-------. 1 boinc boinc       186 Nov 29 02:30 output.list
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc       620 Nov 29 02:30 runtime_log
[2025-11-29 02:30:32] -rw-------. 1 boinc boinc    184320 Nov 29 02:30 result.tar.gz
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc      8636 Nov 29 02:30 runtime_log.err
[2025-11-29 02:30:32] -rw-------. 1 boinc boinc       647 Nov 29 02:30 15hNDm9vAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6LLKDmjsBLIo.diag
[2025-11-29 02:30:32] -rw-r--r--. 1 boinc boinc     22611 Nov 29 02:30 stderr.txt
[2025-11-29 02:30:32] No HITS result produced
[2025-11-29 02:30:32]  *** Contents of shared directory: ***
[2025-11-29 02:30:32] total 367296
[2025-11-29 02:30:32] -rw-r--r--. 2 boinc boinc 375308564 Nov 29 02:21 ATLAS.root_0
[2025-11-29 02:30:32] -rw-r--r--. 2 boinc boinc    590118 Nov 29 02:21 input.tar.gz
[2025-11-29 02:30:32] -rw-r--r--. 2 boinc boinc     15847 Nov 29 02:21 start_atlas.sh
[2025-11-29 02:30:32] -rw-------. 1 boinc boinc    184320 Nov 29 02:30 result.tar.gz
02:30:33 (3967823): run_atlas exited; CPU time 68.900754
02:30:33 (3967823): called boinc_finish(0)

</stderr_txt>
]]>

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