Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:42:35 (379374): wrapper (7.7.26015): starting
00:42:35 (379374): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 00:42:35] Arguments: --nthreads 8
[2025-11-29 00:42:35] Threads: 8
[2025-11-29 00:42:35] Checking for CVMFS
[2025-11-29 00:42:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 00:42:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 00:42:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 00:42:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 00:42:40] 2.11.3.0 920209 32479 199432 153436 2 438 29597146 45568000 13087 130560 0 215195403 99.796 128815108 21312 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-29 00:42:40] CVMFS is ok
[2025-11-29 00:42:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 00:42:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 00:42:40] Further information can be found at the LHC@home message board.
[2025-11-29 00:42:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 00:42:40] Checking for apptainer binary...
[2025-11-29 00:42:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 00:42:40] Running /usr/bin/apptainer --version
[2025-11-29 00:42:41] apptainer version 1.4.1-1.el9
[2025-11-29 00:42:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 00:42:43] wns0020.triumf.lcg
[2025-11-29 00:42:43] apptainer works
[2025-11-29 00:42:43] Set ATHENA_PROC_NUMBER=8
[2025-11-29 00:42:43] Set ATHENA_CORE_NUMBER=8
[2025-11-29 00:42:43] Starting ATLAS job with PandaID=6896912354
[2025-11-29 00:42:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 00:56:06]  *** The last 200 lines of the pilot log: ***
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | ..............................
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . Timing measurements:
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . get job = 1 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . initial setup = 9 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . payload setup = 107 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . stage-in = 0 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . payload execution = 324 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . stage-out = 1 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . log creation = 0 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,483 | INFO     | ..............................
[2025-11-29 00:56:06] 2025-11-29 08:55:07,483 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 00:56:06] 2025-11-29 08:55:07,483 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896912354/pilotlog.txt
[2025-11-29 00:56:06] 2025-11-29 08:55:07,588 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-29 00:56:06] - Log from pilotlog.txt -
[2025-11-29 00:56:06] 2025-11-29 08:55:07,458 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896912354/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 00:56:06] 2025-11-29 08:55:07,480 | INFO     | extracted standard info from prmon json
[2025-11-29 00:56:06] 2025-11-29 08:55:07,480 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 00:56:06] 2025-11-29 08:55:07,480 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 00:56:06] 2025-11-29 08:55:07,481 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 00:56:06] 2025-11-29 08:55:07,481 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 00:56:06] 2025-11-29 08:55:07,481 | WARNING  | wrong length of table data, x=[1764406071.0, 1764406132.0, 1764406193.0, 1764406254.0, 1764406315.0], y=[1799.0, 504261.0, 755147.0, 329077.0, 742294.0] (must be s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | ..............................
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . Timing measurements:
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . get job = 1 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . initial setup = 9 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . payload setup = 107 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . stage-in = 0 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . payload execution = 324 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . stage-out = 1 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . log creation = 0 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,483 | INFO     | ..............................
[2025-11-29 00:56:06] 2025-11-29 08:55:07,483 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 00:56:06] 2025-11-29 08:55:07,483 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896912354/pilotlog.txt
[2025-11-29 00:56:06] 2025-11-29 08:55:07,588 | WARNING  | 
[2025-11-29 00:56:06] [begin log extracts]
[2025-11-29 00:56:06] - Log from pilotlog.txt -
[2025-11-29 00:56:06] 2025-11-29 08:55:07,458 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896912354/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 00:56:06] 2025-11-29 08:55:07,480 | INFO     | extracted standard info from prmon json
[2025-11-29 00:56:06] 2025-11-29 08:55:07,480 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 00:56:06] 2025-11-29 08:55:07,480 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 00:56:06] 2025-11-29 08:55:07,481 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-29 00:56:06] 2025-11-29 08:55:07,481 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-29 00:56:06] 2025-11-29 08:55:07,481 | WARNING  | wrong length of table data, x=[1764406071.0, 1764406132.0, 1764406193.0, 1764406254.0, 1764406315.0], y=[1799.0, 504261.0, 755147.0, 329077.0, 742294.0] (must be s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | ..............................
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . Timing measurements:
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . get job = 1 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . initial setup = 9 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . payload setup = 107 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . stage-in = 0 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . payload execution = 324 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . stage-out = 1 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,482 | INFO     | . log creation = 0 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,483 | INFO     | ..............................
[2025-11-29 00:56:06] 2025-11-29 08:55:07,483 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-29 00:56:06] 2025-11-29 08:55:07,483 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896912354/pilotlog.txt
[2025-11-29 00:56:06] [end log extracts]
[2025-11-29 00:56:06] 2025-11-29 08:55:07,589 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-29 00:56:06] 2025-11-29 08:55:07,589 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-29 00:56:06] 2025-11-29 08:55:07,872 | INFO     | time since job start (668s) is within the limit (172800.0s)
[2025-11-29 00:56:06] 2025-11-29 08:55:07,936 | INFO     | 
[2025-11-29 00:56:06] 2025-11-29 08:55:07,936 | INFO     | job summary report
[2025-11-29 00:56:06] 2025-11-29 08:55:07,936 | INFO     | --------------------------------------------------
[2025-11-29 00:56:06] 2025-11-29 08:55:07,936 | INFO     | PanDA job id: 6896912354
[2025-11-29 00:56:06] 2025-11-29 08:55:07,936 | INFO     | task id: 47538121
[2025-11-29 00:56:06] 2025-11-29 08:55:07,936 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-29 00:52:37,930 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | pilot state: failed 
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | transexitcode: 65
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | exeerrorcode: 65
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | exitcode: 65
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | cpuconsumptiontime: 74 s
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | nevents: 0
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | neventsw: 0
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | pid: 391603
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | pgrp: 391603
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | corecount: 8
[2025-11-29 00:56:06] 2025-11-29 08:55:07,937 | INFO     | event service: False
[2025-11-29 00:56:06] 2025-11-29 08:55:07,938 | INFO     | sizes: {0: 2284447, 11: 2284447, 22: 2284475, 33: 2284503, 42: 2284821, 44: 2284877, 435: 2308775, 438: 2313065, 440: 2313121, 577: 2313315}
[2025-11-29 00:56:06] 2025-11-29 08:55:07,938 | INFO     | --------------------------------------------------
[2025-11-29 00:56:06] 2025-11-29 08:55:07,938 | INFO     | 
[2025-11-29 00:56:06] 2025-11-29 08:55:07,938 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-29 00:56:06] 2025-11-29 08:55:08,197 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,198 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,199 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,199 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,199 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,199 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 00:56:06] 2025-11-29 08:55:08,199 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,199 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 00:56:06] 2025-11-29 08:55:08,199 | INFO     | job 6896912354 has completed (purged errors)
[2025-11-29 00:56:06] 2025-11-29 08:55:08,199 | INFO     | overall cleanup function is called
[2025-11-29 00:56:06] 2025-11-29 08:55:09,238 | INFO     | --- collectZombieJob: --- 10, [391603]
[2025-11-29 00:56:06] 2025-11-29 08:55:09,238 | INFO     | zombie collector waiting for pid 391603
[2025-11-29 00:56:06] 2025-11-29 08:55:09,238 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 00:56:06] 2025-11-29 08:55:09,238 | INFO     | collected zombie processes
[2025-11-29 00:56:06] 2025-11-29 08:55:09,238 | INFO     | will attempt to kill all subprocesses of pid=391603
[2025-11-29 00:56:06] 2025-11-29 08:55:10,100 | INFO     | PID=383590 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-29 00:56:06] 2025-11-29 08:55:10,101 | INFO     | .. there are 33 such processes running
[2025-11-29 00:56:06] 2025-11-29 08:55:10,123 | INFO     | process IDs to be killed: [391603] (in reverse order)
[2025-11-29 00:56:06] 2025-11-29 08:55:10,535 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 00:56:06] 2025-11-29 08:55:10,536 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 00:56:06] 2025-11-29 08:55:10,567 | INFO     | did not find any defunct processes belonging to 391603
[2025-11-29 00:56:06] 2025-11-29 08:55:10,588 | INFO     | did not find any defunct processes belonging to 391603
[2025-11-29 00:56:06] 2025-11-29 08:55:10,589 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 00:56:06] 2025-11-29 08:55:10,590 | INFO     | ready for new job
[2025-11-29 00:56:06] 2025-11-29 08:55:10,590 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 00:56:06] 2025-11-29 08:55:10,591 | INFO     | ***************************************
[2025-11-29 00:56:06] 2025-11-29 08:55:10,591 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 00:56:06] 2025-11-29 08:55:10,591 | INFO     | ***************************************
[2025-11-29 00:56:06] 2025-11-29 08:55:10,591 | INFO     | 
[2025-11-29 00:56:06] 2025-11-29 08:55:10,593 | INFO     | architecture information:
[2025-11-29 00:56:06] 2025-11-29 08:55:10,594 | INFO     | executing command: cat /etc/os-release
[2025-11-29 00:56:06] 2025-11-29 08:55:10,608 | INFO     | cat /etc/os-release:
[2025-11-29 00:56:06] NAME="CentOS Linux"
[2025-11-29 00:56:06] VERSION="7 (Core)"
[2025-11-29 00:56:06] ID="centos"
[2025-11-29 00:56:06] ID_LIKE="rhel fedora"
[2025-11-29 00:56:06] VERSION_ID="7"
[2025-11-29 00:56:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 00:56:06] ANSI_COLOR="0;31"
[2025-11-29 00:56:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 00:56:06] HOME_URL="https://www.centos.org/"
[2025-11-29 00:56:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 00:56:06] 
[2025-11-29 00:56:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 00:56:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 00:56:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 00:56:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 00:56:06] 
[2025-11-29 00:56:06] 2025-11-29 08:55:10,608 | INFO     | ***************************************
[2025-11-29 00:56:06] 2025-11-29 08:55:11,113 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-29 00:56:06] 2025-11-29 08:55:11,186 | INFO     | sufficient remaining disk space (1377414676480 B)
[2025-11-29 00:56:06] 2025-11-29 08:55:11,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 00:56:06] 2025-11-29 08:55:11,186 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 00:56:06] 2025-11-29 08:55:11,187 | INFO     | update_server=False
[2025-11-29 00:56:06] 2025-11-29 08:55:11,187 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 00:56:06] 2025-11-29 08:55:11,192 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 00:56:06] 2025-11-29 08:55:11,360 | INFO     | all job control threads have been joined
[2025-11-29 00:56:06] 2025-11-29 08:55:11,457 | INFO     | all data control threads have been joined
[2025-11-29 00:56:06] 2025-11-29 08:55:11,977 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 00:56:06] 2025-11-29 08:55:11,977 | INFO     | aborting loop
[2025-11-29 00:56:06] 2025-11-29 08:55:12,193 | INFO     | [job] retrieve thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:12,352 | INFO     | [job] validate thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:12,367 | INFO     | [job] control thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:12,437 | INFO     | [payload] failed_post thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:12,464 | INFO     | [data] control thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:12,573 | INFO     | all payload control threads have been joined
[2025-11-29 00:56:06] 2025-11-29 08:55:12,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 00:56:06] 2025-11-29 08:55:12,983 | INFO     | [job] job monitor thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:12,994 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:13,001 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:13,002 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 00:56:06] 2025-11-29 08:55:13,037 | INFO     | [payload] validate_post thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:13,210 | INFO     | [data] copytool_out thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:13,235 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:13,245 | INFO     | [data] copytool_in thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:13,579 | INFO     | [payload] control thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:13,648 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:14,008 | INFO     | [job] queue monitor thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:16,696 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 00:56:06] 2025-11-29 08:55:44,153 | INFO     | PID=383590 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-29 00:56:06] 2025-11-29 08:55:44,154 | INFO     | .. there are 33 such processes running
[2025-11-29 00:56:06] 2025-11-29 08:55:44,154 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 00:56:06] 2025-11-29 08:55:44,154 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 00:56:06] 2025-11-29 08:55:44,154 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 00:56:06] 2025-11-29 08:55:59,649 | INFO     | [monitor] cgroup control has ended
[2025-11-29 00:56:06] 2025-11-29 08:56:00,373 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140712942520128)>', '<ExcThread(monitor, started 140712154740480)>']
[2025-11-29 00:56:06] 2025-11-29 08:56:01,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 00:56:06] 2025-11-29 08:56:01,268 | INFO     | [monitor] control thread has ended
[2025-11-29 00:56:06] 2025-11-29 08:56:05,399 | INFO     | all workflow threads have been joined
[2025-11-29 00:56:06] 2025-11-29 08:56:05,400 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 00:56:06] 2025-11-29 08:56:05,400 | INFO     | traces error code: 0
[2025-11-29 00:56:06] 2025-11-29 08:56:05,400 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 00:56:06] 2025-11-29 08:56:05,588 [wrapper] ==== pilot stdout END ====
[2025-11-29 00:56:06] 2025-11-29 08:56:05,622 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 00:56:06] 2025-11-29 08:56:05,670 [wrapper] pilotpid: 383590
[2025-11-29 00:56:06] 2025-11-29 08:56:05,686 [wrapper] Pilot exit status: 0
[2025-11-29 00:56:06] 2025-11-29 08:56:05,817 [wrapper] pandaids: 6896912354
[2025-11-29 00:56:06] 2025-11-29 08:56:05,956 [wrapper] cleanup supervisor_pilot  383596 383591
[2025-11-29 00:56:06] 2025-11-29 08:56:05,959 [wrapper] Test setup, not cleaning
[2025-11-29 00:56:06] 2025-11-29 08:56:05,961 [wrapper] apfmon messages muted
[2025-11-29 00:56:06] 2025-11-29 08:56:05,963 [wrapper] ==== wrapper stdout END ====
[2025-11-29 00:56:06] 2025-11-29 08:56:05,964 [wrapper] ==== wrapper stderr END ====
[2025-11-29 00:56:06]  *** Error codes and diagnostics ***
[2025-11-29 00:56:06]     "exeErrorCode": 65,
[2025-11-29 00:56:06]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-29 00:56:06]     "pilotErrorCode": 1305,
[2025-11-29 00:56:06]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-29 00:56:06]  *** Listing of results directory ***
[2025-11-29 00:56:06] total 374040
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc    576529 Nov 28 02:28 pilot3.tar.gz
[2025-11-29 00:56:06] -rwx------. 1 boinc boinc     36292 Nov 28 02:28 runpilot2-wrapper.sh
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc      5112 Nov 28 02:32 queuedata.json
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc       100 Nov 29 00:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 00:56:06] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 00:42 run_atlas
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc       105 Nov 29 00:42 job.xml
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc      6447 Nov 29 00:42 init_data.xml
[2025-11-29 00:56:06] -rw-r--r--. 2 boinc boinc 378709772 Nov 29 00:42 EVNT.47528880._000014.pool.root.1
[2025-11-29 00:56:06] -rw-r--r--. 2 boinc boinc     15847 Nov 29 00:42 start_atlas.sh
[2025-11-29 00:56:06] drwxrwx--x. 2 boinc boinc      4096 Nov 29 00:42 shared
[2025-11-29 00:56:06] -rw-r--r--. 2 boinc boinc    590122 Nov 29 00:42 input.tar.gz
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc         0 Nov 29 00:42 boinc_lockfile
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc      2879 Nov 29 00:42 pandaJob.out
[2025-11-29 00:56:06] -rw-------. 1 boinc boinc    991818 Nov 29 00:43 agis_schedconf.cvmfs.json
[2025-11-29 00:56:06] -rw-------. 1 boinc boinc   1516240 Nov 29 00:43 agis_ddmendpoints.agis.ALL.json
[2025-11-29 00:56:06] drwx------. 5 boinc boinc      4096 Nov 29 00:44 pilot3
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc       525 Nov 29 00:52 boinc_task_state.xml
[2025-11-29 00:56:06] -rw-------. 1 boinc boinc       997 Nov 29 00:52 memory_monitor_summary.json
[2025-11-29 00:56:06] -rw-------. 1 boinc boinc     55385 Nov 29 00:52 log.47538121._000134.job.log.tgz.1
[2025-11-29 00:56:06] -rw-------. 1 boinc boinc        95 Nov 29 00:54 pilot_heartbeat.json
[2025-11-29 00:56:06] -rw-------. 1 boinc boinc      9914 Nov 29 00:55 heartbeat.json
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc        23 Nov 29 00:56 wrapper_checkpoint.txt
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc      8192 Nov 29 00:56 boinc_mmap_file
[2025-11-29 00:56:06] -rw-------. 1 boinc boinc      4822 Nov 29 00:56 pilotlog.txt
[2025-11-29 00:56:06] -rw-------. 1 boinc boinc    143288 Nov 29 00:56 log.47538121._000134.job.log.1
[2025-11-29 00:56:06] -rw-------. 1 boinc boinc       186 Nov 29 00:56 output.list
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc       620 Nov 29 00:56 runtime_log
[2025-11-29 00:56:06] -rw-------. 1 boinc boinc    215040 Nov 29 00:56 result.tar.gz
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc      8634 Nov 29 00:56 runtime_log.err
[2025-11-29 00:56:06] -rw-------. 1 boinc boinc       645 Nov 29 00:56 7SgMDmttAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQWOKDmxf86Ro.diag
[2025-11-29 00:56:06] -rw-r--r--. 1 boinc boinc     22649 Nov 29 00:56 stderr.txt
[2025-11-29 00:56:06] No HITS result produced
[2025-11-29 00:56:06]  *** Contents of shared directory: ***
[2025-11-29 00:56:06] total 370648
[2025-11-29 00:56:06] -rw-r--r--. 2 boinc boinc 378709772 Nov 29 00:42 ATLAS.root_0
[2025-11-29 00:56:06] -rw-r--r--. 2 boinc boinc     15847 Nov 29 00:42 start_atlas.sh
[2025-11-29 00:56:06] -rw-r--r--. 2 boinc boinc    590122 Nov 29 00:42 input.tar.gz
[2025-11-29 00:56:06] -rw-------. 1 boinc boinc    215040 Nov 29 00:56 result.tar.gz
00:56:07 (379374): run_atlas exited; CPU time 89.037744
00:56:07 (379374): called boinc_finish(0)

</stderr_txt>
]]>

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