Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:23:52 (13123): wrapper (7.7.26015): starting
09:23:52 (13123): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 09:23:52] Arguments: --nthreads 8
[2025-12-01 09:23:52] Threads: 8
[2025-12-01 09:23:52] Checking for CVMFS
[2025-12-01 09:23:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 09:23:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 09:23:53] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 09:23:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 09:23:55] 2.11.2.0 4058 292298 139948 153511 1 75 19751880 25165825 2504 130560 8 149005619 99.879 87167470 2986 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 09:23:55] CVMFS is ok
[2025-12-01 09:23:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 09:23:55] Checking for apptainer binary...
[2025-12-01 09:23:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 09:23:55] Running /usr/bin/apptainer --version
[2025-12-01 09:23:55] apptainer version 1.3.2-1.el7
[2025-12-01 09:23:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 09:24:00] cg-vwn233.simple-grid.lan
[2025-12-01 09:24:00] apptainer works
[2025-12-01 09:24:00] Set ATHENA_PROC_NUMBER=8
[2025-12-01 09:24:00] Set ATHENA_CORE_NUMBER=8
[2025-12-01 09:24:01] Starting ATLAS job with PandaID=6896598015
[2025-12-01 09:24:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 05:44:23]  *** The last 200 lines of the pilot log: ***
[2025-12-02 05:44:23] 2025-12-02 04:43:34,670 | INFO     | sum of square deviations: 509477379090.8342
[2025-12-02 05:44:23] 2025-12-02 04:43:34,711 | INFO     | sum of deviations: 4999589102312.326
[2025-12-02 05:44:23] 2025-12-02 04:43:34,711 | INFO     | mean x: 1764614291.5118644
[2025-12-02 05:44:23] 2025-12-02 04:43:34,711 | INFO     | mean y: 3347500.833898305
[2025-12-02 05:44:23] 2025-12-02 04:43:34,717 | INFO     | intersect: -17313115886.354836
[2025-12-02 05:44:23] 2025-12-02 04:43:34,718 | INFO     | chi2: 18.415096565804145
[2025-12-02 05:44:23] 2025-12-02 04:43:34,719 | INFO     | current chi2=18.415096565804145 (change=12.488983345081305 %)
[2025-12-02 05:44:23] 2025-12-02 04:43:34,719 | INFO     | right removable region: 1179
[2025-12-02 05:44:23] 2025-12-02 04:43:34,721 | INFO     | sum of square deviations: 509476650750.83405
[2025-12-02 05:44:23] 2025-12-02 04:43:34,762 | INFO     | sum of deviations: 3972244965395.622
[2025-12-02 05:44:23] 2025-12-02 04:43:34,763 | INFO     | mean x: 1764614596.5118644
[2025-12-02 05:44:23] 2025-12-02 04:43:34,763 | INFO     | mean y: 3351664.955932203
[2025-12-02 05:44:23] 2025-12-02 04:43:34,763 | INFO     | intersect: -13754847923.83338
[2025-12-02 05:44:23] 2025-12-02 04:43:34,765 | INFO     | chi2: 15.692655456503035
[2025-12-02 05:44:23] 2025-12-02 04:43:34,765 | INFO     | current chi2=15.692655456503035 (change=25.426389804327926 %)
[2025-12-02 05:44:23] 2025-12-02 04:43:34,766 | INFO     | sum of square deviations: 503027291240.69305
[2025-12-02 05:44:23] 2025-12-02 04:43:34,806 | INFO     | sum of deviations: 3403732872137.5845
[2025-12-02 05:44:23] 2025-12-02 04:43:34,806 | INFO     | mean x: 1764614749.0161703
[2025-12-02 05:44:23] 2025-12-02 04:43:34,806 | INFO     | mean y: 3365107.653617021
[2025-12-02 05:44:23] 2025-12-02 04:43:34,807 | INFO     | intersect: -11936896052.075813
[2025-12-02 05:44:23] 2025-12-02 04:43:34,808 | INFO     | chi2: 11.079052350533948
[2025-12-02 05:44:23] 2025-12-02 04:43:34,808 | INFO     | current chi2=11.079052350533948 (change=29.399760408664367 %)
[2025-12-02 05:44:23] 2025-12-02 04:43:34,810 | INFO     | sum of square deviations: 496632583918.00824
[2025-12-02 05:44:23] 2025-12-02 04:43:34,859 | INFO     | sum of deviations: 2878717097142.606
[2025-12-02 05:44:23] 2025-12-02 04:43:34,860 | INFO     | mean x: 1764614901.5205128
[2025-12-02 05:44:23] 2025-12-02 04:43:34,860 | INFO     | mean y: 3377628.058119658
[2025-12-02 05:44:23] 2025-12-02 04:43:34,860 | INFO     | intersect: -10225164057.234066
[2025-12-02 05:44:23] 2025-12-02 04:43:34,862 | INFO     | chi2: 7.256372411537319
[2025-12-02 05:44:23] 2025-12-02 04:43:34,862 | INFO     | current chi2=7.256372411537319 (change=34.50367249878008 %)
[2025-12-02 05:44:23] 2025-12-02 04:43:34,864 | INFO     | sum of square deviations: 490292296220.27844
[2025-12-02 05:44:23] 2025-12-02 04:43:34,904 | INFO     | sum of deviations: 2383003659591.421
[2025-12-02 05:44:23] 2025-12-02 04:43:34,904 | INFO     | mean x: 1764615054.0248928
[2025-12-02 05:44:23] 2025-12-02 04:43:34,904 | INFO     | mean y: 3389549.3648068667
[2025-12-02 05:44:23] 2025-12-02 04:43:34,904 | INFO     | intersect: -8573298609.778067
[2025-12-02 05:44:23] 2025-12-02 04:43:34,906 | INFO     | chi2: 3.9306522554437997
[2025-12-02 05:44:23] 2025-12-02 04:43:34,906 | INFO     | current chi2=3.9306522554437997 (change=45.83171821233661 %)
[2025-12-02 05:44:23] 2025-12-02 04:43:34,908 | INFO     | sum of square deviations: 484006479481.22437
[2025-12-02 05:44:23] 2025-12-02 04:43:34,949 | INFO     | sum of deviations: 2206558089808.861
[2025-12-02 05:44:23] 2025-12-02 04:43:34,949 | INFO     | mean x: 1764615206.525862
[2025-12-02 05:44:23] 2025-12-02 04:43:34,949 | INFO     | mean y: 3393824.6379310344
[2025-12-02 05:44:23] 2025-12-02 04:43:34,950 | INFO     | intersect: -8041386822.788135
[2025-12-02 05:44:23] 2025-12-02 04:43:34,951 | INFO     | chi2: 3.4435452847780064
[2025-12-02 05:44:23] 2025-12-02 04:43:34,951 | INFO     | current chi2=3.4435452847780064 (change=12.392522640260767 %)
[2025-12-02 05:44:23] 2025-12-02 04:43:34,951 | INFO     | left removable region: 50
[2025-12-02 05:44:23] 2025-12-02 04:43:34,953 | INFO     | sum of square deviations: 446230628953.9157
[2025-12-02 05:44:23] 2025-12-02 04:43:35,001 | INFO     | sum of deviations: 2349264628196.7466
[2025-12-02 05:44:23] 2025-12-02 04:43:35,002 | INFO     | mean x: 1764615786.0310009
[2025-12-02 05:44:23] 2025-12-02 04:43:35,002 | INFO     | mean y: 3413658.97874225
[2025-12-02 05:44:23] 2025-12-02 04:43:35,002 | INFO     | intersect: -9286736275.817326
[2025-12-02 05:44:23] 2025-12-02 04:43:35,003 | INFO     | chi2: 0.4180678503913907
[2025-12-02 05:44:23] 2025-12-02 04:43:35,003 | INFO     | current memory leak: 5.26 B/s (using 1129 data points, chi2=0.42)
[2025-12-02 05:44:23] 2025-12-02 04:43:35,005 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-12-02 05:44:23] 2025-12-02 04:43:35,005 | INFO     | ..............................
[2025-12-02 05:44:23] 2025-12-02 04:43:35,005 | INFO     | . Timing measurements:
[2025-12-02 05:44:23] 2025-12-02 04:43:35,005 | INFO     | . get job = 26 s
[2025-12-02 05:44:23] 2025-12-02 04:43:35,005 | INFO     | . initial setup = 35 s
[2025-12-02 05:44:23] 2025-12-02 04:43:35,005 | INFO     | . payload setup = 293 s
[2025-12-02 05:44:23] 2025-12-02 04:43:35,005 | INFO     | . stage-in = 0 s
[2025-12-02 05:44:23] 2025-12-02 04:43:35,006 | INFO     | . payload execution = 72417 s
[2025-12-02 05:44:23] 2025-12-02 04:43:35,006 | INFO     | . stage-out = 3 s
[2025-12-02 05:44:23] 2025-12-02 04:43:35,006 | INFO     | . log creation = 1 s
[2025-12-02 05:44:23] 2025-12-02 04:43:35,006 | INFO     | ..............................
[2025-12-02 05:44:23] 2025-12-02 04:43:35,134 | INFO     | 
[2025-12-02 05:44:23] 2025-12-02 04:43:35,135 | INFO     | job summary report
[2025-12-02 05:44:23] 2025-12-02 04:43:35,135 | INFO     | --------------------------------------------------
[2025-12-02 05:44:23] 2025-12-02 04:43:35,135 | INFO     | PanDA job id: 6896598015
[2025-12-02 05:44:23] 2025-12-02 04:43:35,135 | INFO     | task id: 47538121
[2025-12-02 05:44:23] 2025-12-02 04:43:35,135 | INFO     | errors: (none)
[2025-12-02 05:44:23] 2025-12-02 04:43:35,135 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 05:44:23] 2025-12-02 04:43:35,136 | INFO     | pilot state: finished 
[2025-12-02 05:44:23] 2025-12-02 04:43:35,136 | INFO     | transexitcode: 0
[2025-12-02 05:44:23] 2025-12-02 04:43:35,136 | INFO     | exeerrorcode: 0
[2025-12-02 05:44:23] 2025-12-02 04:43:35,136 | INFO     | exeerrordiag: 
[2025-12-02 05:44:23] 2025-12-02 04:43:35,136 | INFO     | exitcode: 0
[2025-12-02 05:44:23] 2025-12-02 04:43:35,136 | INFO     | exitmsg: OK
[2025-12-02 05:44:23] 2025-12-02 04:43:35,136 | INFO     | cpuconsumptiontime: 270483 s
[2025-12-02 05:44:23] 2025-12-02 04:43:35,137 | INFO     | nevents: 1000
[2025-12-02 05:44:23] 2025-12-02 04:43:35,137 | INFO     | neventsw: 0
[2025-12-02 05:44:23] 2025-12-02 04:43:35,137 | INFO     | pid: 24231
[2025-12-02 05:44:23] 2025-12-02 04:43:35,137 | INFO     | pgrp: 24231
[2025-12-02 05:44:23] 2025-12-02 04:43:35,137 | INFO     | corecount: 8
[2025-12-02 05:44:23] 2025-12-02 04:43:35,137 | INFO     | event service: False
[2025-12-02 05:44:23] 2025-12-02 04:43:35,137 | INFO     | sizes: {0: 2284220, 1: 2284475, 12: 2284475, 23: 2284503, 34: 2284531, 44: 2284559, 55: 2284715, 66: 2284743, 77: 2284771, 84: 2285089, 87: 2285117, 72714: 2359399
[2025-12-02 05:44:23] 2025-12-02 04:43:35,137 | INFO     | --------------------------------------------------
[2025-12-02 05:44:23] 2025-12-02 04:43:35,138 | INFO     | 
[2025-12-02 05:44:23] 2025-12-02 04:43:35,138 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-12-02 05:44:23] 2025-12-02 04:43:35,189 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,189 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,189 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,189 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,189 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,190 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,190 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,190 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,190 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,190 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,190 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,190 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,190 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,190 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,190 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,191 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,191 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,191 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 05:44:23] 2025-12-02 04:43:35,191 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,191 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 05:44:23] 2025-12-02 04:43:35,191 | INFO     | job 6896598015 has completed (purged errors)
[2025-12-02 05:44:23] 2025-12-02 04:43:35,192 | INFO     | overall cleanup function is called
[2025-12-02 05:44:23] 2025-12-02 04:43:36,208 | INFO     | --- collectZombieJob: --- 10, [24231]
[2025-12-02 05:44:23] 2025-12-02 04:43:36,209 | INFO     | zombie collector waiting for pid 24231
[2025-12-02 05:44:23] 2025-12-02 04:43:36,209 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 05:44:23] 2025-12-02 04:43:36,209 | INFO     | collected zombie processes
[2025-12-02 05:44:23] 2025-12-02 04:43:36,209 | INFO     | will attempt to kill all subprocesses of pid=24231
[2025-12-02 05:44:23] 2025-12-02 04:43:36,308 | INFO     | process IDs to be killed: [24231] (in reverse order)
[2025-12-02 05:44:23] 2025-12-02 04:43:36,420 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 05:44:23] 2025-12-02 04:43:36,420 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 05:44:23] 2025-12-02 04:43:36,423 | INFO     | did not find any defunct processes belonging to 24231
[2025-12-02 05:44:23] 2025-12-02 04:43:36,426 | INFO     | did not find any defunct processes belonging to 24231
[2025-12-02 05:44:23] 2025-12-02 04:43:36,428 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 05:44:23] 2025-12-02 04:43:36,428 | INFO     | ready for new job
[2025-12-02 05:44:23] 2025-12-02 04:43:36,429 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 05:44:23] 2025-12-02 04:43:36,433 | INFO     | ***************************************
[2025-12-02 05:44:23] 2025-12-02 04:43:36,434 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 05:44:23] 2025-12-02 04:43:36,434 | INFO     | ***************************************
[2025-12-02 05:44:23] 2025-12-02 04:43:36,434 | INFO     | 
[2025-12-02 05:44:23] 2025-12-02 04:43:36,435 | INFO     | pilot is running in a VM
[2025-12-02 05:44:23] 2025-12-02 04:43:36,435 | INFO     | architecture information:
[2025-12-02 05:44:23] 2025-12-02 04:43:36,436 | INFO     | executing command: cat /etc/os-release
[2025-12-02 05:44:23] 2025-12-02 04:43:36,464 | INFO     | cat /etc/os-release:
[2025-12-02 05:44:23] NAME="CentOS Linux"
[2025-12-02 05:44:23] VERSION="7 (Core)"
[2025-12-02 05:44:23] ID="centos"
[2025-12-02 05:44:23] ID_LIKE="rhel fedora"
[2025-12-02 05:44:23] VERSION_ID="7"
[2025-12-02 05:44:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 05:44:23] ANSI_COLOR="0;31"
[2025-12-02 05:44:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 05:44:23] HOME_URL="https://www.centos.org/"
[2025-12-02 05:44:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 05:44:23] 
[2025-12-02 05:44:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 05:44:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 05:44:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 05:44:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 05:44:23] 
[2025-12-02 05:44:23] 2025-12-02 04:43:36,465 | INFO     | ***************************************
[2025-12-02 05:44:23] 2025-12-02 04:43:36,969 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-12-02 05:44:23] 2025-12-02 04:43:37,001 | INFO     | sufficient remaining disk space (489541337088 B)
[2025-12-02 05:44:23] 2025-12-02 04:43:37,002 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 05:44:23] 2025-12-02 04:43:37,002 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 05:44:23] 2025-12-02 04:43:37,002 | INFO     | update_server=False
[2025-12-02 05:44:23] 2025-12-02 04:43:37,002 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 05:44:23] 2025-12-02 04:43:37,002 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 05:44:23] 2025-12-02 04:43:37,002 | INFO     | aborting loop
[2025-12-02 05:44:23] 2025-12-02 04:43:37,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 05:44:23] 2025-12-02 04:43:37,304 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 05:44:23] 2025-12-02 04:43:37,616 | INFO     | all job control threads have been joined
[2025-12-02 05:44:23] 2025-12-02 04:43:37,664 | INFO     | all payload control threads have been joined
[2025-12-02 05:44:23] 2025-12-02 04:43:38,007 | INFO     | [job] retrieve thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:38,007 | INFO     | [job] job monitor thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:38,008 | INFO     | [job] queue monitor thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:38,068 | INFO     | all data control threads have been joined
[2025-12-02 05:44:23] 2025-12-02 04:43:38,210 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:38,482 | INFO     | [job] validate thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:38,623 | INFO     | [job] control thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:38,671 | INFO     | [payload] control thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:38,803 | INFO     | [data] copytool_in thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:38,812 | INFO     | [payload] failed_post thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:38,860 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:38,929 | INFO     | [payload] validate_post thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:39,074 | INFO     | [data] control thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:39,290 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:39,311 | INFO     | [data] copytool_out thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:39,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 05:44:23] 2025-12-02 04:43:43,770 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:43:47,249 | INFO     | job.realtimelogging is not enabled
[2025-12-02 05:44:23] 2025-12-02 04:43:48,257 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 05:44:23] 2025-12-02 04:44:07,734 | INFO     | PID=16940 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 05:44:23] 2025-12-02 04:44:07,734 | INFO     | .. there are 9 such processes running
[2025-12-02 05:44:23] 2025-12-02 04:44:07,734 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 05:44:23] 2025-12-02 04:44:07,734 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 05:44:23] 2025-12-02 04:44:07,734 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 05:44:23] 2025-12-02 04:44:11,394 | INFO     | [monitor] cgroup control has ended
[2025-12-02 05:44:23] 2025-12-02 04:44:12,832 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140320944879424)>', '<ExcThread(monitor, started 140320499017472)>']
[2025-12-02 05:44:23] 2025-12-02 04:44:13,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 05:44:23] 2025-12-02 04:44:13,772 | INFO     | [monitor] control thread has ended
[2025-12-02 05:44:23] 2025-12-02 04:44:17,857 | INFO     | all workflow threads have been joined
[2025-12-02 05:44:23] 2025-12-02 04:44:17,858 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 05:44:23] 2025-12-02 04:44:17,858 | INFO     | traces error code: 0
[2025-12-02 05:44:23] 2025-12-02 04:44:17,858 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 05:44:23] 2025-12-02 04:44:18,188 [wrapper] ==== pilot stdout END ====
[2025-12-02 05:44:23] 2025-12-02 04:44:18,299 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 05:44:23] 2025-12-02 04:44:18,386 [wrapper] pilotpid: 16940
[2025-12-02 05:44:23] 2025-12-02 04:44:18,457 [wrapper] Pilot exit status: 0
[2025-12-02 05:44:23] 2025-12-02 04:44:18,866 [wrapper] pandaids: 6896598015
[2025-12-02 05:44:23] 2025-12-02 04:44:19,810 [wrapper] cleanup supervisor_pilot  9391 16941
[2025-12-02 05:44:23] 2025-12-02 04:44:19,905 [wrapper] Test setup, not cleaning
[2025-12-02 05:44:23] 2025-12-02 04:44:20,035 [wrapper] apfmon messages muted
[2025-12-02 05:44:23] 2025-12-02 04:44:20,134 [wrapper] ==== wrapper stdout END ====
[2025-12-02 05:44:23] 2025-12-02 04:44:20,240 [wrapper] ==== wrapper stderr END ====
[2025-12-02 05:44:23]  *** Error codes and diagnostics ***
[2025-12-02 05:44:23]     "exeErrorCode": 0,
[2025-12-02 05:44:23]     "exeErrorDiag": "",
[2025-12-02 05:44:23]     "pilotErrorCode": 0,
[2025-12-02 05:44:23]     "pilotErrorDiag": "",
[2025-12-02 05:44:23]  *** Listing of results directory ***
[2025-12-02 05:44:23] total 1081952
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc    576529 Nov 28 11:28 pilot3.tar.gz
[2025-12-02 05:44:23] -rwx------. 1 boinc boinc     36292 Nov 28 11:28 runpilot2-wrapper.sh
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc      5112 Nov 28 11:32 queuedata.json
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc       100 Dec  1 09:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 05:44:23] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 09:23 run_atlas
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc       105 Dec  1 09:23 job.xml
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc      6392 Dec  1 09:23 init_data.xml
[2025-12-02 05:44:23] -rw-r--r--. 2 boinc boinc 375191483 Dec  1 09:23 EVNT.47528880._000004.pool.root.1
[2025-12-02 05:44:23] -rw-r--r--. 2 boinc boinc     15847 Dec  1 09:23 start_atlas.sh
[2025-12-02 05:44:23] drwxrwx--x. 2 boinc boinc        68 Dec  1 09:23 shared
[2025-12-02 05:44:23] -rw-r--r--. 2 boinc boinc    590121 Dec  1 09:23 input.tar.gz
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc         0 Dec  1 09:23 boinc_lockfile
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc      2878 Dec  1 09:24 pandaJob.out
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc      4726 Dec  1 09:27 agis_schedconf.agis.BOINC_MCORE.json
[2025-12-02 05:44:23] drwx------. 5 boinc boinc      4096 Dec  1 09:28 pilot3
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc       533 Dec  2 05:33 boinc_task_state.xml
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc 705518438 Dec  2 05:42 HITS.47538121._000033.pool.root.1
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc      1032 Dec  2 05:43 memory_monitor_summary.json
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc   1516240 Dec  2 05:43 agis_ddmendpoints.agis.ALL.json
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc   2405608 Dec  2 05:43 log.47538121._000033.job.log.tgz.1
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc        95 Dec  2 05:43 pilot_heartbeat.json
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc     26980 Dec  2 05:43 heartbeat.json
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc      8192 Dec  2 05:43 boinc_mmap_file
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc        29 Dec  2 05:43 wrapper_checkpoint.txt
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc      4956 Dec  2 05:44 pilotlog.txt
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc   9725326 Dec  2 05:44 log.47538121._000033.job.log.1
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc       353 Dec  2 05:44 output.list
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc       620 Dec  2 05:44 runtime_log
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc  12165120 Dec  2 05:44 result.tar.gz
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc      8817 Dec  2 05:44 runtime_log.err
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc       661 Dec  2 05:44 M1pKDmrtAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2GLKDmfvDI6m.diag
[2025-12-02 05:44:23] -rw-r--r--. 1 boinc boinc     20866 Dec  2 05:44 stderr.txt
[2025-12-02 05:44:23] HITS file was successfully produced:
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc 705518438 Dec  2 05:42 shared/HITS.pool.root.1
[2025-12-02 05:44:23]  *** Contents of shared directory: ***
[2025-12-02 05:44:23] total 1067860
[2025-12-02 05:44:23] -rw-r--r--. 2 boinc boinc 375191483 Dec  1 09:23 ATLAS.root_0
[2025-12-02 05:44:23] -rw-r--r--. 2 boinc boinc     15847 Dec  1 09:23 start_atlas.sh
[2025-12-02 05:44:23] -rw-r--r--. 2 boinc boinc    590121 Dec  1 09:23 input.tar.gz
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc 705518438 Dec  2 05:42 HITS.pool.root.1
[2025-12-02 05:44:23] -rw-------. 1 boinc boinc  12165120 Dec  2 05:44 result.tar.gz
05:44:24 (13123): run_atlas exited; CPU time 270896.438645
05:44:24 (13123): called boinc_finish(0)

</stderr_txt>
]]>

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