Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:10:14 (24539): wrapper (7.7.26015): starting
04:10:14 (24539): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 04:10:14] Arguments: --nthreads 8
[2025-12-01 04:10:14] Threads: 8
[2025-12-01 04:10:14] Checking for CVMFS
[2025-12-01 04:10:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 04:10:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 04:10:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 04:10:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 04:10:17] 2.11.2.0 14339 292032 143240 153502 3 75 20316325 25165824 2504 130560 18 158226609 99.890 82876507 3591 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 04:10:17] CVMFS is ok
[2025-12-01 04:10:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 04:10:17] Checking for apptainer binary...
[2025-12-01 04:10:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 04:10:17] Running /usr/bin/apptainer --version
[2025-12-01 04:10:17] apptainer version 1.3.2-1.el7
[2025-12-01 04:10:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 04:10:22] cg-vwn496.simple-grid.lan
[2025-12-01 04:10:22] apptainer works
[2025-12-01 04:10:22] Set ATHENA_PROC_NUMBER=8
[2025-12-01 04:10:22] Set ATHENA_CORE_NUMBER=8
[2025-12-01 04:10:22] Starting ATLAS job with PandaID=6897016302
[2025-12-01 04:10:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 22:14:14]  *** The last 200 lines of the pilot log: ***
[2025-12-01 22:14:14] 2025-12-01 21:13:24,176 | INFO     | monitor loop #4410: job 0:6897016302 is in state 'finished'
[2025-12-01 22:14:14] 2025-12-01 21:13:24,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 22:14:14] 2025-12-01 21:13:25,456 | INFO     | time since job start (64755s) is within the limit (172800.0s)
[2025-12-01 22:14:14] 2025-12-01 21:13:26,682 | INFO     | monitor loop #4411: job 0:6897016302 is in state 'finished'
[2025-12-01 22:14:14] 2025-12-01 21:13:26,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 22:14:14] 2025-12-01 21:13:27,471 | INFO     | time since job start (64757s) is within the limit (172800.0s)
[2025-12-01 22:14:14] 2025-12-01 21:13:28,613 | INFO     | PID=28342 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 22:14:14] 2025-12-01 21:13:28,613 | INFO     | .. there are 9 such processes running
[2025-12-01 22:14:14] 2025-12-01 21:13:29,196 | INFO     | monitor loop #4412: job 0:6897016302 is in state 'finished'
[2025-12-01 22:14:14] 2025-12-01 21:13:29,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 22:14:14] 2025-12-01 21:13:29,614 | INFO     | time since job start (64759s) is within the limit (172800.0s)
[2025-12-01 22:14:14] 2025-12-01 21:13:31,621 | INFO     | time since job start (64761s) is within the limit (172800.0s)
[2025-12-01 22:14:14] 2025-12-01 21:13:31,621 | INFO     | 64767s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-01 22:14:14] 2025-12-01 21:13:31,710 | INFO     | monitor loop #4413: job 0:6897016302 is in state 'finished'
[2025-12-01 22:14:14] 2025-12-01 21:13:31,710 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 22:14:14] 2025-12-01 21:13:32,902 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 22:14:14] 2025-12-01 21:13:32,903 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-01 22:14:14] 2025-12-01 21:13:32,904 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6897016302/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 22:14:14] 2025-12-01 21:13:32,905 | INFO     | extracted standard info from prmon json
[2025-12-01 22:14:14] 2025-12-01 21:13:32,905 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 22:14:14] 2025-12-01 21:13:32,905 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 22:14:14] 2025-12-01 21:13:32,928 | INFO     | fitting pss+swap vs Time
[2025-12-01 22:14:14] 2025-12-01 21:13:32,929 | INFO     | sum of square deviations: 358959555440.2239
[2025-12-01 22:14:14] 2025-12-01 21:13:32,977 | INFO     | sum of deviations: 3078496521202.4253
[2025-12-01 22:14:14] 2025-12-01 21:13:32,977 | INFO     | mean x: 1764591490.4838095
[2025-12-01 22:14:14] 2025-12-01 21:13:32,977 | INFO     | mean y: 3301070.583809524
[2025-12-01 22:14:14] 2025-12-01 21:13:32,977 | INFO     | intersect: -15130127424.266296
[2025-12-01 22:14:14] 2025-12-01 21:13:32,978 | INFO     | chi2: 28.19027200908459
[2025-12-01 22:14:14] 2025-12-01 21:13:32,980 | INFO     | sum of square deviations: 353856249227.8628
[2025-12-01 22:14:14] 2025-12-01 21:13:33,017 | INFO     | sum of deviations: 3519372198212.8564
[2025-12-01 22:14:14] 2025-12-01 21:13:33,017 | INFO     | mean x: 1764591337.9885168
[2025-12-01 22:14:14] 2025-12-01 21:13:33,018 | INFO     | mean y: 3314244.905263158
[2025-12-01 22:14:14] 2025-12-01 21:13:33,018 | INFO     | intersect: -17546902007.245678
[2025-12-01 22:14:14] 2025-12-01 21:13:33,019 | INFO     | chi2: 24.555816212593342
[2025-12-01 22:14:14] 2025-12-01 21:13:33,019 | INFO     | current chi2=24.555816212593342 (change=12.892588604040464 %)
[2025-12-01 22:14:14] 2025-12-01 21:13:33,019 | INFO     | right removable region: 1044
[2025-12-01 22:14:14] 2025-12-01 21:13:33,021 | INFO     | sum of square deviations: 353855619097.86285
[2025-12-01 22:14:14] 2025-12-01 21:13:33,051 | INFO     | sum of deviations: 2550509762534.763
[2025-12-01 22:14:14] 2025-12-01 21:13:33,051 | INFO     | mean x: 1764591642.9885168
[2025-12-01 22:14:14] 2025-12-01 21:13:33,051 | INFO     | mean y: 3316846.813397129
[2025-12-01 22:14:14] 2025-12-01 21:13:33,052 | INFO     | intersect: -12715453096.1468
[2025-12-01 22:14:14] 2025-12-01 21:13:33,053 | INFO     | chi2: 22.85021141369596
[2025-12-01 22:14:14] 2025-12-01 21:13:33,053 | INFO     | current chi2=22.85021141369596 (change=18.942919719496658 %)
[2025-12-01 22:14:14] 2025-12-01 21:13:33,053 | INFO     | left removable region: 10
[2025-12-01 22:14:14] 2025-12-01 21:13:33,054 | INFO     | sum of square deviations: 342798479432.498
[2025-12-01 22:14:14] 2025-12-01 21:13:33,090 | INFO     | sum of deviations: 2584262083128.384
[2025-12-01 22:14:14] 2025-12-01 21:13:33,092 | INFO     | mean x: 1764591612.499033
[2025-12-01 22:14:14] 2025-12-01 21:13:33,092 | INFO     | mean y: 3348425.3829787234
[2025-12-01 22:14:14] 2025-12-01 21:13:33,092 | INFO     | intersect: -13299415355.649452
[2025-12-01 22:14:14] 2025-12-01 21:13:33,093 | INFO     | chi2: 13.558284625248934
[2025-12-01 22:14:14] 2025-12-01 21:13:33,094 | INFO     | current memory leak: 7.54 B/s (using 1034 data points, chi2=13.56)
[2025-12-01 22:14:14] 2025-12-01 21:13:33,095 | INFO     | could have reported an average CPU frequency of 2249 MHz (36 samples)
[2025-12-01 22:14:14] 2025-12-01 21:13:33,095 | INFO     | ..............................
[2025-12-01 22:14:14] 2025-12-01 21:13:33,095 | INFO     | . Timing measurements:
[2025-12-01 22:14:14] 2025-12-01 21:13:33,095 | INFO     | . get job = 0 s
[2025-12-01 22:14:14] 2025-12-01 21:13:33,095 | INFO     | . initial setup = 5 s
[2025-12-01 22:14:14] 2025-12-01 21:13:33,095 | INFO     | . payload setup = 294 s
[2025-12-01 22:14:14] 2025-12-01 21:13:33,095 | INFO     | . stage-in = 0 s
[2025-12-01 22:14:14] 2025-12-01 21:13:33,095 | INFO     | . payload execution = 64171 s
[2025-12-01 22:14:14] 2025-12-01 21:13:33,095 | INFO     | . stage-out = 9 s
[2025-12-01 22:14:14] 2025-12-01 21:13:33,095 | INFO     | . log creation = 2 s
[2025-12-01 22:14:14] 2025-12-01 21:13:33,095 | INFO     | ..............................
[2025-12-01 22:14:14] 2025-12-01 21:13:33,628 | INFO     | time since job start (64763s) is within the limit (172800.0s)
[2025-12-01 22:14:14] 2025-12-01 21:13:33,649 | INFO     | 
[2025-12-01 22:14:14] 2025-12-01 21:13:33,649 | INFO     | job summary report
[2025-12-01 22:14:14] 2025-12-01 21:13:33,649 | INFO     | --------------------------------------------------
[2025-12-01 22:14:14] 2025-12-01 21:13:33,649 | INFO     | PanDA job id: 6897016302
[2025-12-01 22:14:14] 2025-12-01 21:13:33,649 | INFO     | task id: 47531058
[2025-12-01 22:14:14] 2025-12-01 21:13:33,649 | INFO     | errors: (none)
[2025-12-01 22:14:14] 2025-12-01 21:13:33,649 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 22:14:14] 2025-12-01 21:13:33,649 | INFO     | pilot state: finished 
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | transexitcode: 0
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | exeerrorcode: 0
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | exeerrordiag: 
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | exitcode: 0
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | exitmsg: OK
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | cpuconsumptiontime: 237213 s
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | nevents: 1000
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | neventsw: 0
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | pid: 3248
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | pgrp: 3248
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | corecount: 8
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | event service: False
[2025-12-01 22:14:14] 2025-12-01 21:13:33,650 | INFO     | sizes: {0: 2284224, 1: 2284479, 2: 2284479, 12: 2284507, 23: 2284535, 34: 2284563, 44: 2284719, 55: 2284747, 66: 2284775, 76: 2284803, 87: 2284859, 93: 2285429, 98
[2025-12-01 22:14:14] 2025-12-01 21:13:33,651 | INFO     | --------------------------------------------------
[2025-12-01 22:14:14] 2025-12-01 21:13:33,651 | INFO     | 
[2025-12-01 22:14:14] 2025-12-01 21:13:33,651 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-12-01 22:14:14] 2025-12-01 21:13:34,128 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,129 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,129 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,129 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,129 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,129 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,129 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,129 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,129 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,129 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,129 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,130 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,130 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,130 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,130 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,130 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,130 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,130 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 22:14:14] 2025-12-01 21:13:34,130 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,130 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 22:14:14] 2025-12-01 21:13:34,130 | INFO     | job 6897016302 has completed (purged errors)
[2025-12-01 22:14:14] 2025-12-01 21:13:34,131 | INFO     | overall cleanup function is called
[2025-12-01 22:14:14] 2025-12-01 21:13:35,148 | INFO     | --- collectZombieJob: --- 10, [3248]
[2025-12-01 22:14:14] 2025-12-01 21:13:35,148 | INFO     | zombie collector waiting for pid 3248
[2025-12-01 22:14:14] 2025-12-01 21:13:35,148 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 22:14:14] 2025-12-01 21:13:35,148 | INFO     | collected zombie processes
[2025-12-01 22:14:14] 2025-12-01 21:13:35,148 | INFO     | will attempt to kill all subprocesses of pid=3248
[2025-12-01 22:14:14] 2025-12-01 21:13:35,286 | INFO     | process IDs to be killed: [3248] (in reverse order)
[2025-12-01 22:14:14] 2025-12-01 21:13:36,060 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 22:14:14] 2025-12-01 21:13:36,061 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 22:14:14] 2025-12-01 21:13:36,064 | INFO     | did not find any defunct processes belonging to 3248
[2025-12-01 22:14:14] 2025-12-01 21:13:36,066 | INFO     | did not find any defunct processes belonging to 3248
[2025-12-01 22:14:14] 2025-12-01 21:13:36,115 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 22:14:14] 2025-12-01 21:13:36,115 | INFO     | ready for new job
[2025-12-01 22:14:14] 2025-12-01 21:13:36,115 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 22:14:14] 2025-12-01 21:13:36,119 | INFO     | ***************************************
[2025-12-01 22:14:14] 2025-12-01 21:13:36,120 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 22:14:14] 2025-12-01 21:13:36,120 | INFO     | ***************************************
[2025-12-01 22:14:14] 2025-12-01 21:13:36,120 | INFO     | 
[2025-12-01 22:14:14] 2025-12-01 21:13:36,120 | INFO     | pilot is running in a VM
[2025-12-01 22:14:14] 2025-12-01 21:13:36,120 | INFO     | architecture information:
[2025-12-01 22:14:14] 2025-12-01 21:13:36,133 | INFO     | executing command: cat /etc/os-release
[2025-12-01 22:14:14] 2025-12-01 21:13:36,414 | INFO     | cat /etc/os-release:
[2025-12-01 22:14:14] NAME="CentOS Linux"
[2025-12-01 22:14:14] VERSION="7 (Core)"
[2025-12-01 22:14:14] ID="centos"
[2025-12-01 22:14:14] ID_LIKE="rhel fedora"
[2025-12-01 22:14:14] VERSION_ID="7"
[2025-12-01 22:14:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 22:14:14] ANSI_COLOR="0;31"
[2025-12-01 22:14:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 22:14:14] HOME_URL="https://www.centos.org/"
[2025-12-01 22:14:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 22:14:14] 
[2025-12-01 22:14:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 22:14:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 22:14:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 22:14:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 22:14:14] 
[2025-12-01 22:14:14] 2025-12-01 21:13:36,415 | INFO     | ***************************************
[2025-12-01 22:14:14] 2025-12-01 21:13:36,918 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-12-01 22:14:14] 2025-12-01 21:13:37,161 | INFO     | sufficient remaining disk space (489043263488 B)
[2025-12-01 22:14:14] 2025-12-01 21:13:37,161 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 22:14:14] 2025-12-01 21:13:37,161 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 22:14:14] 2025-12-01 21:13:37,161 | INFO     | update_server=False
[2025-12-01 22:14:14] 2025-12-01 21:13:37,161 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 22:14:14] 2025-12-01 21:13:37,162 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 22:14:14] 2025-12-01 21:13:37,163 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 22:14:14] 2025-12-01 21:13:37,431 | INFO     | all data control threads have been joined
[2025-12-01 22:14:14] 2025-12-01 21:13:37,737 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 22:14:14] 2025-12-01 21:13:37,737 | INFO     | aborting loop
[2025-12-01 22:14:14] 2025-12-01 21:13:37,868 | INFO     | all job control threads have been joined
[2025-12-01 22:14:14] 2025-12-01 21:13:38,167 | INFO     | [job] retrieve thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:38,174 | INFO     | all payload control threads have been joined
[2025-12-01 22:14:14] 2025-12-01 21:13:38,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 22:14:14] 2025-12-01 21:13:38,437 | INFO     | [data] control thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:38,520 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:38,605 | INFO     | [payload] failed_post thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:38,665 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:38,667 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:38,743 | INFO     | [job] job monitor thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:38,874 | INFO     | [job] control thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:39,169 | INFO     | [data] copytool_out thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:39,180 | INFO     | [payload] control thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:39,246 | INFO     | [job] queue monitor thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:39,324 | INFO     | [payload] validate_post thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:39,391 | INFO     | [data] copytool_in thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:39,491 | INFO     | [job] validate thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:39,616 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:13:41,172 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 22:14:14] 2025-12-01 21:14:02,516 | INFO     | [monitor] cgroup control has ended
[2025-12-01 22:14:14] 2025-12-01 21:14:04,555 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547630925632)>', '<ExcThread(monitor, started 140547201152768)>']
[2025-12-01 22:14:14] 2025-12-01 21:14:06,829 | INFO     | PID=28342 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 22:14:14] 2025-12-01 21:14:06,829 | INFO     | .. there are 9 such processes running
[2025-12-01 22:14:14] 2025-12-01 21:14:06,830 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 22:14:14] 2025-12-01 21:14:06,830 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 22:14:14] 2025-12-01 21:14:06,830 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 22:14:14] 2025-12-01 21:14:06,830 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 22:14:14] 2025-12-01 21:14:06,830 | INFO     | [monitor] control thread has ended
[2025-12-01 22:14:14] 2025-12-01 21:14:09,581 | INFO     | all workflow threads have been joined
[2025-12-01 22:14:14] 2025-12-01 21:14:09,581 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 22:14:14] 2025-12-01 21:14:09,581 | INFO     | traces error code: 0
[2025-12-01 22:14:14] 2025-12-01 21:14:09,581 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 22:14:14] 2025-12-01 21:14:09,818 [wrapper] ==== pilot stdout END ====
[2025-12-01 22:14:14] 2025-12-01 21:14:09,895 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 22:14:14] 2025-12-01 21:14:09,991 [wrapper] pilotpid: 28342
[2025-12-01 22:14:14] 2025-12-01 21:14:10,096 [wrapper] Pilot exit status: 0
[2025-12-01 22:14:14] 2025-12-01 21:14:10,488 [wrapper] pandaids: 6897016302
[2025-12-01 22:14:14] 2025-12-01 21:14:11,169 [wrapper] cleanup supervisor_pilot 26360 28343
[2025-12-01 22:14:14] 2025-12-01 21:14:11,226 [wrapper] Test setup, not cleaning
[2025-12-01 22:14:14] 2025-12-01 21:14:11,311 [wrapper] apfmon messages muted
[2025-12-01 22:14:14] 2025-12-01 21:14:11,413 [wrapper] ==== wrapper stdout END ====
[2025-12-01 22:14:14] 2025-12-01 21:14:11,541 [wrapper] ==== wrapper stderr END ====
[2025-12-01 22:14:14]  *** Error codes and diagnostics ***
[2025-12-01 22:14:14]     "exeErrorCode": 0,
[2025-12-01 22:14:14]     "exeErrorDiag": "",
[2025-12-01 22:14:14]     "pilotErrorCode": 0,
[2025-12-01 22:14:14]     "pilotErrorDiag": "",
[2025-12-01 22:14:14]  *** Listing of results directory ***
[2025-12-01 22:14:14] total 1060604
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc    576529 Nov 28 11:28 pilot3.tar.gz
[2025-12-01 22:14:14] -rwx------. 1 boinc boinc     36292 Nov 28 11:28 runpilot2-wrapper.sh
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc      5112 Nov 28 11:30 queuedata.json
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc       100 Dec  1 04:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 22:14:14] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 04:10 run_atlas
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc       105 Dec  1 04:10 job.xml
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc      6393 Dec  1 04:10 init_data.xml
[2025-12-01 22:14:14] -rw-r--r--. 2 boinc boinc 375309784 Dec  1 04:10 EVNT.47531050._000442.pool.root.1
[2025-12-01 22:14:14] -rw-r--r--. 2 boinc boinc     15847 Dec  1 04:10 start_atlas.sh
[2025-12-01 22:14:14] drwxrwx--x. 2 boinc boinc        68 Dec  1 04:10 shared
[2025-12-01 22:14:14] -rw-r--r--. 2 boinc boinc    590125 Dec  1 04:10 input.tar.gz
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc         0 Dec  1 04:10 boinc_lockfile
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc      2879 Dec  1 04:10 pandaJob.out
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc    993253 Dec  1 04:14 agis_schedconf.cvmfs.json
[2025-12-01 22:14:14] drwx------. 5 boinc boinc      4096 Dec  1 04:14 pilot3
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc       533 Dec  1 21:55 boinc_task_state.xml
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc 684908229 Dec  1 22:10 HITS.47531058._000583.pool.root.1
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc      1031 Dec  1 22:11 memory_monitor_summary.json
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc   1516240 Dec  1 22:11 agis_ddmendpoints.agis.ALL.json
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc   2310415 Dec  1 22:11 log.47531058._000583.job.log.tgz.1
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc     27802 Dec  1 22:13 heartbeat.json
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc        95 Dec  1 22:13 pilot_heartbeat.json
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc        29 Dec  1 22:14 wrapper_checkpoint.txt
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc      8192 Dec  1 22:14 boinc_mmap_file
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc      4885 Dec  1 22:14 pilotlog.txt
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc   8636305 Dec  1 22:14 log.47531058._000583.job.log.1
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc       353 Dec  1 22:14 output.list
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc       620 Dec  1 22:14 runtime_log
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc  10987520 Dec  1 22:14 result.tar.gz
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc      8833 Dec  1 22:14 runtime_log.err
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc       661 Dec  1 22:14 BENLDmWtAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhSOKDmQe3Kdn.diag
[2025-12-01 22:14:14] -rw-r--r--. 1 boinc boinc     21518 Dec  1 22:14 stderr.txt
[2025-12-01 22:14:14] HITS file was successfully produced:
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc 684908229 Dec  1 22:10 shared/HITS.pool.root.1
[2025-12-01 22:14:14]  *** Contents of shared directory: ***
[2025-12-01 22:14:14] total 1046700
[2025-12-01 22:14:14] -rw-r--r--. 2 boinc boinc 375309784 Dec  1 04:10 ATLAS.root_0
[2025-12-01 22:14:14] -rw-r--r--. 2 boinc boinc     15847 Dec  1 04:10 start_atlas.sh
[2025-12-01 22:14:14] -rw-r--r--. 2 boinc boinc    590125 Dec  1 04:10 input.tar.gz
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc 684908229 Dec  1 22:10 HITS.pool.root.1
[2025-12-01 22:14:14] -rw-------. 1 boinc boinc  10987520 Dec  1 22:14 result.tar.gz
22:14:15 (24539): run_atlas exited; CPU time 237516.149352
22:14:15 (24539): called boinc_finish(0)

</stderr_txt>
]]>

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