Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:29:11 (1612118): wrapper (7.7.26015): starting
14:29:11 (1612118): wrapper: running run_atlas (--nthreads 3)
[2025-12-01 14:29:11] Arguments: --nthreads 3
[2025-12-01 14:29:11] Threads: 3
[2025-12-01 14:29:11] Checking for CVMFS
[2025-12-01 14:29:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 14:30:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 14:30:06] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 14:30:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 14:30:07] 2.13.3.0 1612337 0 31172 153507 3 1 42069162 52428800 0 130560 0 0 0.000 1293 53 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-12-01 14:30:07] CVMFS is ok
[2025-12-01 14:30:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 14:30:07] Checking for apptainer binary...
[2025-12-01 14:30:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 14:30:07] Running /usr/bin/apptainer --version
[2025-12-01 14:30:07] apptainer version 1.4.4-1.el9
[2025-12-01 14:30:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 14:30:07] testio004
[2025-12-01 14:30:07] apptainer works
[2025-12-01 14:30:07] Set ATHENA_PROC_NUMBER=3
[2025-12-01 14:30:07] Set ATHENA_CORE_NUMBER=3
[2025-12-01 14:30:07] Starting ATLAS job with PandaID=6901064011
[2025-12-01 14:30:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 02:21:10]  *** The last 200 lines of the pilot log: ***
[2025-12-02 02:21:10] 2025-12-01 17:20:24,239 | INFO     | fitting pss+swap vs Time
[2025-12-02 02:21:10] 2025-12-01 17:20:24,239 | INFO     | sum of square deviations: 104545476470.0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,244 | INFO     | sum of deviations: 261960957302.99997
[2025-12-02 02:21:10] 2025-12-01 17:20:24,245 | INFO     | mean x: 1764588330.5
[2025-12-02 02:21:10] 2025-12-01 17:20:24,245 | INFO     | mean y: 2185434.7959770113
[2025-12-02 02:21:10] 2025-12-01 17:20:24,245 | INFO     | intersect: -4419366447.806319
[2025-12-02 02:21:10] 2025-12-01 17:20:24,245 | INFO     | chi2: 7.459391154862162
[2025-12-02 02:21:10] 2025-12-01 17:20:24,245 | INFO     | sum of square deviations: 102308485690.0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,250 | INFO     | sum of deviations: 420283620924.9999
[2025-12-02 02:21:10] 2025-12-01 17:20:24,250 | INFO     | mean x: 1764588178.0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,250 | INFO     | mean y: 2196225.3053545584
[2025-12-02 02:21:10] 2025-12-01 17:20:24,250 | INFO     | intersect: -7246738248.599947
[2025-12-02 02:21:10] 2025-12-01 17:20:24,251 | INFO     | chi2: 4.957891523015993
[2025-12-02 02:21:10] 2025-12-01 17:20:24,251 | INFO     | current chi2=4.957891523015993 (change=33.53490358547088 %)
[2025-12-02 02:21:10] 2025-12-01 17:20:24,251 | INFO     | sum of square deviations: 100103635047.5
[2025-12-02 02:21:10] 2025-12-01 17:20:24,256 | INFO     | sum of deviations: 500492132172.00006
[2025-12-02 02:21:10] 2025-12-01 17:20:24,256 | INFO     | mean x: 1764588025.5
[2025-12-02 02:21:10] 2025-12-01 17:20:24,256 | INFO     | mean y: 2201750.1836734693
[2025-12-02 02:21:10] 2025-12-01 17:20:24,256 | INFO     | intersect: -8820279300.26576
[2025-12-02 02:21:10] 2025-12-01 17:20:24,256 | INFO     | chi2: 3.543882629696144
[2025-12-02 02:21:10] 2025-12-01 17:20:24,256 | INFO     | current chi2=3.543882629696144 (change=28.520367715905103 %)
[2025-12-02 02:21:10] 2025-12-01 17:20:24,257 | INFO     | sum of square deviations: 97930691980.0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,261 | INFO     | sum of deviations: 496307381624.0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,262 | INFO     | mean x: 1764587873.0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,262 | INFO     | mean y: 2201456.6622613803
[2025-12-02 02:21:10] 2025-12-01 17:20:24,262 | INFO     | intersect: -8940633207.193172
[2025-12-02 02:21:10] 2025-12-01 17:20:24,262 | INFO     | chi2: 3.5422299810721083
[2025-12-02 02:21:10] 2025-12-01 17:20:24,262 | INFO     | current chi2=3.5422299810721083 (change=0.04663384193898943 %)
[2025-12-02 02:21:10] 2025-12-01 17:20:24,262 | INFO     | right removable region: 680
[2025-12-02 02:21:10] 2025-12-01 17:20:24,262 | INFO     | sum of square deviations: 102308485690.0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,267 | INFO     | sum of deviations: 107064568948.00018
[2025-12-02 02:21:10] 2025-12-01 17:20:24,267 | INFO     | mean x: 1764588483.0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,267 | INFO     | mean y: 2195986.008683068
[2025-12-02 02:21:10] 2025-12-01 17:20:24,267 | INFO     | intersect: -1844424106.438514
[2025-12-02 02:21:10] 2025-12-01 17:20:24,268 | INFO     | chi2: 5.113076464439452
[2025-12-02 02:21:10] 2025-12-01 17:20:24,268 | INFO     | current chi2=5.113076464439452 (change=31.45450669781999 %)
[2025-12-02 02:21:10] 2025-12-01 17:20:24,268 | INFO     | sum of square deviations: 100103635047.5
[2025-12-02 02:21:10] 2025-12-01 17:20:24,273 | INFO     | sum of deviations: 1044925516.4999695
[2025-12-02 02:21:10] 2025-12-01 17:20:24,273 | INFO     | mean x: 1764588635.5
[2025-12-02 02:21:10] 2025-12-01 17:20:24,273 | INFO     | mean y: 2203312.981049563
[2025-12-02 02:21:10] 2025-12-01 17:20:24,273 | INFO     | intersect: -16216234.825430043
[2025-12-02 02:21:10] 2025-12-01 17:20:24,273 | INFO     | chi2: 4.054488432246854
[2025-12-02 02:21:10] 2025-12-01 17:20:24,273 | INFO     | current chi2=4.054488432246854 (change=20.703543933967953 %)
[2025-12-02 02:21:10] 2025-12-01 17:20:24,273 | INFO     | left removable region: 20
[2025-12-02 02:21:10] 2025-12-01 17:20:24,274 | INFO     | sum of square deviations: 89147513345.0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,278 | INFO     | sum of deviations: 229728431887.0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,278 | INFO     | mean x: 1764588452.5
[2025-12-02 02:21:10] 2025-12-01 17:20:24,278 | INFO     | mean y: 2220484.0575757576
[2025-12-02 02:21:10] 2025-12-01 17:20:24,278 | INFO     | intersect: -4545030728.098296
[2025-12-02 02:21:10] 2025-12-01 17:20:24,278 | INFO     | chi2: 0.08954417151500221
[2025-12-02 02:21:10] 2025-12-01 17:20:24,279 | INFO     | current memory leak: 2.58 B/s (using 660 data points, chi2=0.09)
[2025-12-02 02:21:10] 2025-12-01 17:20:24,279 | INFO     | could have reported an average CPU frequency of 3608 MHz (25 samples)
[2025-12-02 02:21:10] 2025-12-01 17:20:24,279 | INFO     | ..............................
[2025-12-02 02:21:10] 2025-12-01 17:20:24,279 | INFO     | . Timing measurements:
[2025-12-02 02:21:10] 2025-12-01 17:20:24,279 | INFO     | . get job = 0 s
[2025-12-02 02:21:10] 2025-12-01 17:20:24,279 | INFO     | . initial setup = 6 s
[2025-12-02 02:21:10] 2025-12-01 17:20:24,279 | INFO     | . payload setup = 5 s
[2025-12-02 02:21:10] 2025-12-01 17:20:24,279 | INFO     | . stage-in = 0 s
[2025-12-02 02:21:10] 2025-12-01 17:20:24,279 | INFO     | . payload execution = 42405 s
[2025-12-02 02:21:10] 2025-12-01 17:20:24,279 | INFO     | . stage-out = 5 s
[2025-12-02 02:21:10] 2025-12-01 17:20:24,279 | INFO     | . log creation = 0 s
[2025-12-02 02:21:10] 2025-12-01 17:20:24,279 | INFO     | ..............................
[2025-12-02 02:21:10] 2025-12-01 17:20:24,421 | INFO     | PID=1616387 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 02:21:10] 2025-12-01 17:20:24,633 | INFO     | 
[2025-12-02 02:21:10] 2025-12-01 17:20:24,633 | INFO     | job summary report
[2025-12-02 02:21:10] 2025-12-01 17:20:24,633 | INFO     | --------------------------------------------------
[2025-12-02 02:21:10] 2025-12-01 17:20:24,633 | INFO     | PanDA job id: 6901064011
[2025-12-02 02:21:10] 2025-12-01 17:20:24,633 | INFO     | task id: 47556185
[2025-12-02 02:21:10] 2025-12-01 17:20:24,633 | INFO     | errors: (none)
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | pilot state: finished 
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | transexitcode: 0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | exeerrorcode: 0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | exeerrordiag: 
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | exitcode: 0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | exitmsg: OK
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | cpuconsumptiontime: 114564 s
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | nevents: 1000
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | neventsw: 0
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | pid: 1622918
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | pgrp: 1622918
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | corecount: 3
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | event service: False
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | sizes: {0: 2284140, 1: 2284339, 3: 2284601, 11: 2284629, 42414: 2328545, 42420: 2337723, 42501: 2337977}
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | --------------------------------------------------
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | 
[2025-12-02 02:21:10] 2025-12-01 17:20:24,634 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-12-02 02:21:10] 2025-12-01 17:20:24,643 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,644 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 02:21:10] 2025-12-01 17:20:24,645 | INFO     | job 6901064011 has completed (purged errors)
[2025-12-02 02:21:10] 2025-12-01 17:20:24,645 | INFO     | overall cleanup function is called
[2025-12-02 02:21:10] 2025-12-01 17:20:25,653 | INFO     | --- collectZombieJob: --- 10, [1622918]
[2025-12-02 02:21:10] 2025-12-01 17:20:25,653 | INFO     | zombie collector waiting for pid 1622918
[2025-12-02 02:21:10] 2025-12-01 17:20:25,653 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 02:21:10] 2025-12-01 17:20:25,654 | INFO     | collected zombie processes
[2025-12-02 02:21:10] 2025-12-01 17:20:25,654 | INFO     | will attempt to kill all subprocesses of pid=1622918
[2025-12-02 02:21:10] 2025-12-01 17:20:25,685 | INFO     | process IDs to be killed: [1622918] (in reverse order)
[2025-12-02 02:21:10] 2025-12-01 17:20:25,704 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 02:21:10] 2025-12-01 17:20:25,704 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 02:21:10] 2025-12-01 17:20:25,705 | INFO     | did not find any defunct processes belonging to 1622918
[2025-12-02 02:21:10] 2025-12-01 17:20:25,706 | INFO     | did not find any defunct processes belonging to 1622918
[2025-12-02 02:21:10] 2025-12-01 17:20:25,707 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 02:21:10] 2025-12-01 17:20:25,707 | INFO     | ready for new job
[2025-12-02 02:21:10] 2025-12-01 17:20:25,707 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 02:21:10] 2025-12-01 17:20:25,709 | INFO     | ***************************************
[2025-12-02 02:21:10] 2025-12-01 17:20:25,709 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 02:21:10] 2025-12-01 17:20:25,709 | INFO     | ***************************************
[2025-12-02 02:21:10] 2025-12-01 17:20:25,709 | INFO     | 
[2025-12-02 02:21:10] 2025-12-01 17:20:25,709 | INFO     | architecture information:
[2025-12-02 02:21:10] 2025-12-01 17:20:25,709 | INFO     | executing command: cat /etc/os-release
[2025-12-02 02:21:10] 2025-12-01 17:20:25,717 | INFO     | cat /etc/os-release:
[2025-12-02 02:21:10] NAME="CentOS Linux"
[2025-12-02 02:21:10] VERSION="7 (Core)"
[2025-12-02 02:21:10] ID="centos"
[2025-12-02 02:21:10] ID_LIKE="rhel fedora"
[2025-12-02 02:21:10] VERSION_ID="7"
[2025-12-02 02:21:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 02:21:10] ANSI_COLOR="0;31"
[2025-12-02 02:21:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 02:21:10] HOME_URL="https://www.centos.org/"
[2025-12-02 02:21:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 02:21:10] 
[2025-12-02 02:21:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 02:21:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 02:21:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 02:21:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 02:21:10] 
[2025-12-02 02:21:10] 2025-12-01 17:20:25,717 | INFO     | ***************************************
[2025-12-02 02:21:10] 2025-12-01 17:20:26,219 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-12-02 02:21:10] 2025-12-01 17:20:26,228 | INFO     | sufficient remaining disk space (321627619328 B)
[2025-12-02 02:21:10] 2025-12-01 17:20:26,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 02:21:10] 2025-12-01 17:20:26,228 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 02:21:10] 2025-12-01 17:20:26,228 | INFO     | update_server=False
[2025-12-02 02:21:10] 2025-12-01 17:20:26,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 02:21:10] 2025-12-01 17:20:26,229 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:21:10] 2025-12-01 17:20:26,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 02:21:10] 2025-12-01 17:20:26,230 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 02:21:10] 2025-12-01 17:20:26,230 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 02:21:10] 2025-12-01 17:20:26,230 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:21:10] 2025-12-01 17:20:26,231 | INFO     | will abort loop
[2025-12-02 02:21:10] 2025-12-01 17:20:26,262 | INFO     | all payload control threads have been joined
[2025-12-02 02:21:10] 2025-12-01 17:20:26,370 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 02:21:10] 2025-12-01 17:20:26,494 | INFO     | all job control threads have been joined
[2025-12-02 02:21:10] 2025-12-01 17:20:26,520 | INFO     | all data control threads have been joined
[2025-12-02 02:21:10] 2025-12-01 17:20:27,229 | INFO     | [job] retrieve thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:27,234 | INFO     | [job] queue monitor thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:27,235 | INFO     | [job] job monitor thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:27,268 | INFO     | [payload] control thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:27,405 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:27,499 | INFO     | [job] control thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:27,525 | INFO     | [data] control thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:27,661 | INFO     | [data] copytool_in thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:27,994 | INFO     | [payload] failed_post thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:28,074 | INFO     | [job] validate thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:28,307 | INFO     | [payload] validate_post thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:28,375 | INFO     | [data] copytool_out thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:28,602 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:28,646 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:28,708 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:30,230 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 02:21:10] 2025-12-01 17:20:56,518 | INFO     | PID=1616387 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 02:21:10] 2025-12-01 17:20:56,518 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 02:21:10] 2025-12-01 17:20:56,518 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 02:21:10] 2025-12-01 17:20:56,519 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 02:21:10] 2025-12-01 17:21:03,352 | INFO     | [monitor] cgroup control has ended
[2025-12-02 02:21:10] 2025-12-01 17:21:05,169 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139970131523392)>', '<ExcThread(monitor, started 139969427404544)>']
[2025-12-02 02:21:10] 2025-12-01 17:21:05,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 02:21:10] 2025-12-01 17:21:05,563 | INFO     | [monitor] control thread has ended
[2025-12-02 02:21:10] 2025-12-01 17:21:10,195 | INFO     | all workflow threads have been joined
[2025-12-02 02:21:10] 2025-12-01 17:21:10,195 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 02:21:10] 2025-12-01 17:21:10,195 | INFO     | traces error code: 0
[2025-12-02 02:21:10] 2025-12-01 17:21:10,195 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 02:21:10] 2025-12-01 17:21:10,255 [wrapper] ==== pilot stdout END ====
[2025-12-02 02:21:10] 2025-12-01 17:21:10,256 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 02:21:10] 2025-12-01 17:21:10,258 [wrapper] pilotpid: 1616387
[2025-12-02 02:21:10] 2025-12-01 17:21:10,259 [wrapper] Pilot exit status: 0
[2025-12-02 02:21:10] 2025-12-01 17:21:10,265 [wrapper] pandaids: 6901064011
[2025-12-02 02:21:10] 2025-12-01 17:21:10,278 [wrapper] cleanup supervisor_pilot 1687168 1616388
[2025-12-02 02:21:10] 2025-12-01 17:21:10,279 [wrapper] Test setup, not cleaning
[2025-12-02 02:21:10] 2025-12-01 17:21:10,281 [wrapper] apfmon messages muted
[2025-12-02 02:21:10] 2025-12-01 17:21:10,282 [wrapper] ==== wrapper stdout END ====
[2025-12-02 02:21:10] 2025-12-01 17:21:10,284 [wrapper] ==== wrapper stderr END ====
[2025-12-02 02:21:10]  *** Error codes and diagnostics ***
[2025-12-02 02:21:10]     "exeErrorCode": 0,
[2025-12-02 02:21:10]     "exeErrorDiag": "",
[2025-12-02 02:21:10]     "pilotErrorCode": 0,
[2025-12-02 02:21:10]     "pilotErrorDiag": "",
[2025-12-02 02:21:10]  *** Listing of results directory ***
[2025-12-02 02:21:10] total 1313612
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc      5112 Nov 28 19:28 queuedata.json
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc    576529 Nov 28 19:28 pilot3.tar.gz
[2025-12-02 02:21:10] -rwx------. 1 boinc boinc     36292 Nov 28 19:28 runpilot2-wrapper.sh
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc       100 Dec  1 14:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 02:21:10] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 14:29 run_atlas
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc       105 Dec  1 14:29 job.xml
[2025-12-02 02:21:10] -rw-r--r--. 2 boinc boinc     15847 Dec  1 14:29 start_atlas.sh
[2025-12-02 02:21:10] drwxrwx--x. 2 boinc boinc        68 Dec  1 14:29 shared
[2025-12-02 02:21:10] -rw-r--r--. 2 boinc boinc    590109 Dec  1 14:29 input.tar.gz
[2025-12-02 02:21:10] -rw-r--r--. 2 boinc boinc 411271644 Dec  1 14:29 EVNT.47483658._004567.pool.root.1
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc         0 Dec  1 14:29 boinc_lockfile
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc      2785 Dec  1 14:30 pandaJob.out
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc    992521 Dec  1 14:31 agis_schedconf.cvmfs.json
[2025-12-02 02:21:10] drwx------. 5 boinc boinc      4096 Dec  1 14:31 pilot3
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc      9324 Dec  1 18:56 init_data.xml
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc       532 Dec  2 02:10 boinc_task_state.xml
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc 915889969 Dec  2 02:18 HITS.47556185._003301.pool.root.1
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc      1033 Dec  2 02:18 memory_monitor_summary.json
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc   1516240 Dec  2 02:19 agis_ddmendpoints.agis.ALL.json
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc   1319876 Dec  2 02:19 log.47556185._003301.job.log.tgz.1
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc        95 Dec  2 02:19 pilot_heartbeat.json
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc      8594 Dec  2 02:20 heartbeat.json
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc      8192 Dec  2 02:20 boinc_mmap_file
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc        29 Dec  2 02:20 wrapper_checkpoint.txt
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc      4935 Dec  2 02:21 pilotlog.txt
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc   5711853 Dec  2 02:21 log.47556185._003301.job.log.1
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc       353 Dec  2 02:21 output.list
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc       620 Dec  2 02:21 runtime_log
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc   7055360 Dec  2 02:21 result.tar.gz
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc      8776 Dec  2 02:21 runtime_log.err
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc       653 Dec  2 02:21 8w8MDm7sAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlPOKDm8VWLOm.diag
[2025-12-02 02:21:10] -rw-r--r--. 1 boinc boinc     20855 Dec  2 02:21 stderr.txt
[2025-12-02 02:21:10] HITS file was successfully produced:
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc 915889969 Dec  2 02:18 shared/HITS.pool.root.1
[2025-12-02 02:21:10]  *** Contents of shared directory: ***
[2025-12-02 02:21:10] total 1303548
[2025-12-02 02:21:10] -rw-r--r--. 2 boinc boinc     15847 Dec  1 14:29 start_atlas.sh
[2025-12-02 02:21:10] -rw-r--r--. 2 boinc boinc    590109 Dec  1 14:29 input.tar.gz
[2025-12-02 02:21:10] -rw-r--r--. 2 boinc boinc 411271644 Dec  1 14:29 ATLAS.root_0
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc 915889969 Dec  2 02:18 HITS.pool.root.1
[2025-12-02 02:21:10] -rw-------. 1 boinc boinc   7055360 Dec  2 02:21 result.tar.gz
02:21:12 (1612118): run_atlas exited; CPU time 114612.221495
02:21:12 (1612118): called boinc_finish(0)

</stderr_txt>
]]>

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