Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:42:38 (6864): wrapper (7.7.26015): starting
06:42:38 (6864): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 06:42:38] Arguments: --nthreads 8
[2025-12-01 06:42:38] Threads: 8
[2025-12-01 06:42:38] Checking for CVMFS
[2025-12-01 06:42:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 06:42:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 06:42:39] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 06:42:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 06:42:39] 2.11.2.0 3740 292148 140408 153507 2 233 18626368 25165825 2285 130560 10 134933041 99.873 81677277 2811 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 06:42:39] CVMFS is ok
[2025-12-01 06:42:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 06:42:39] Checking for apptainer binary...
[2025-12-01 06:42:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 06:42:39] Running /usr/bin/apptainer --version
[2025-12-01 06:42:39] apptainer version 1.3.2-1.el7
[2025-12-01 06:42:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 06:42:41] cg-vwn234.simple-grid.lan
[2025-12-01 06:42:41] apptainer works
[2025-12-01 06:42:41] Set ATHENA_PROC_NUMBER=8
[2025-12-01 06:42:41] Set ATHENA_CORE_NUMBER=8
[2025-12-01 06:42:41] Starting ATLAS job with PandaID=6900286011
[2025-12-01 06:42:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 05:58:34]  *** The last 200 lines of the pilot log: ***
[2025-12-02 05:58:34] 2025-12-02 04:57:37,912 | INFO     | time since job start (83678s) is within the limit (172800.0s)
[2025-12-02 05:58:34] 2025-12-02 04:57:39,779 | INFO     | monitor loop #5546: job 0:6900286011 is in state 'finished'
[2025-12-02 05:58:34] 2025-12-02 04:57:39,779 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:58:34] 2025-12-02 04:57:39,920 | INFO     | time since job start (83680s) is within the limit (172800.0s)
[2025-12-02 05:58:34] 2025-12-02 04:57:41,067 | INFO     | PID=10686 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 05:58:34] 2025-12-02 04:57:41,067 | INFO     | .. there are 9 such processes running
[2025-12-02 05:58:34] 2025-12-02 04:57:42,071 | INFO     | time since job start (83683s) is within the limit (172800.0s)
[2025-12-02 05:58:34] 2025-12-02 04:57:42,288 | INFO     | monitor loop #5547: job 0:6900286011 is in state 'finished'
[2025-12-02 05:58:34] 2025-12-02 04:57:42,288 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:58:34] 2025-12-02 04:57:44,077 | INFO     | time since job start (83685s) is within the limit (172800.0s)
[2025-12-02 05:58:34] 2025-12-02 04:57:44,793 | INFO     | monitor loop #5548: job 0:6900286011 is in state 'finished'
[2025-12-02 05:58:34] 2025-12-02 04:57:44,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:58:34] 2025-12-02 04:57:46,088 | INFO     | time since job start (83687s) is within the limit (172800.0s)
[2025-12-02 05:58:34] 2025-12-02 04:57:47,208 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 05:58:34] 2025-12-02 04:57:47,209 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-02 05:58:34] 2025-12-02 04:57:47,211 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6900286011/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 05:58:34] 2025-12-02 04:57:47,212 | INFO     | extracted standard info from prmon json
[2025-12-02 05:58:34] 2025-12-02 04:57:47,212 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 05:58:34] 2025-12-02 04:57:47,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 05:58:34] 2025-12-02 04:57:47,247 | INFO     | fitting pss+swap vs Time
[2025-12-02 05:58:34] 2025-12-02 04:57:47,249 | INFO     | sum of square deviations: 797330369881.5786
[2025-12-02 05:58:34] 2025-12-02 04:57:47,324 | INFO     | monitor loop #5549: job 0:6900286011 is in state 'finished'
[2025-12-02 05:58:34] 2025-12-02 04:57:47,324 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:58:34] 2025-12-02 04:57:47,335 | INFO     | sum of deviations: 1825151484618.8193
[2025-12-02 05:58:34] 2025-12-02 04:57:47,336 | INFO     | mean x: 1764609583.6175182
[2025-12-02 05:58:34] 2025-12-02 04:57:47,336 | INFO     | mean y: 2855447.1408759123
[2025-12-02 05:58:34] 2025-12-02 04:57:47,336 | INFO     | intersect: -4036473697.9291315
[2025-12-02 05:58:34] 2025-12-02 04:57:47,338 | INFO     | chi2: 15.787092245918116
[2025-12-02 05:58:34] 2025-12-02 04:57:47,340 | INFO     | sum of square deviations: 788632729557.8123
[2025-12-02 05:58:34] 2025-12-02 04:57:47,415 | INFO     | sum of deviations: 2282999608302.1045
[2025-12-02 05:58:34] 2025-12-02 04:57:47,415 | INFO     | mean x: 1764609431.1216118
[2025-12-02 05:58:34] 2025-12-02 04:57:47,415 | INFO     | mean y: 2863473.915018315
[2025-12-02 05:58:34] 2025-12-02 04:57:47,415 | INFO     | intersect: -5105474652.395925
[2025-12-02 05:58:34] 2025-12-02 04:57:47,417 | INFO     | chi2: 12.494963770702075
[2025-12-02 05:58:34] 2025-12-02 04:57:47,417 | INFO     | current chi2=12.494963770702075 (change=20.853292195510214 %)
[2025-12-02 05:58:34] 2025-12-02 04:57:47,417 | INFO     | right removable region: 1364
[2025-12-02 05:58:34] 2025-12-02 04:57:47,426 | INFO     | sum of square deviations: 788632045623.5365
[2025-12-02 05:58:34] 2025-12-02 04:57:47,498 | INFO     | sum of deviations: 1442232628876.626
[2025-12-02 05:58:34] 2025-12-02 04:57:47,498 | INFO     | mean x: 1764609736.1194139
[2025-12-02 05:58:34] 2025-12-02 04:57:47,499 | INFO     | mean y: 2862154.3765567765
[2025-12-02 05:58:34] 2025-12-02 04:57:47,499 | INFO     | intersect: -3224216624.3618727
[2025-12-02 05:58:34] 2025-12-02 04:57:47,500 | INFO     | chi2: 13.43773630355514
[2025-12-02 05:58:34] 2025-12-02 04:57:47,501 | INFO     | current chi2=13.43773630355514 (change=14.881498795133865 %)
[2025-12-02 05:58:34] 2025-12-02 04:57:47,501 | INFO     | left removable region: 10
[2025-12-02 05:58:34] 2025-12-02 04:57:47,503 | INFO     | sum of square deviations: 769720121582.1488
[2025-12-02 05:58:34] 2025-12-02 04:57:47,572 | INFO     | sum of deviations: 1910768885536.9355
[2025-12-02 05:58:34] 2025-12-02 04:57:47,572 | INFO     | mean x: 1764609705.6225996
[2025-12-02 05:58:34] 2025-12-02 04:57:47,572 | INFO     | mean y: 2873682.7082717875
[2025-12-02 05:58:34] 2025-12-02 04:57:47,572 | INFO     | intersect: -4377629341.806076
[2025-12-02 05:58:34] 2025-12-02 04:57:47,574 | INFO     | chi2: 9.272317186904178
[2025-12-02 05:58:34] 2025-12-02 04:57:47,574 | INFO     | current memory leak: 2.48 B/s (using 1354 data points, chi2=9.27)
[2025-12-02 05:58:34] 2025-12-02 04:57:47,575 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-12-02 05:58:34] 2025-12-02 04:57:47,576 | INFO     | ..............................
[2025-12-02 05:58:34] 2025-12-02 04:57:47,576 | INFO     | . Timing measurements:
[2025-12-02 05:58:34] 2025-12-02 04:57:47,576 | INFO     | . get job = 0 s
[2025-12-02 05:58:34] 2025-12-02 04:57:47,576 | INFO     | . initial setup = 2 s
[2025-12-02 05:58:34] 2025-12-02 04:57:47,576 | INFO     | . payload setup = 10 s
[2025-12-02 05:58:34] 2025-12-02 04:57:47,576 | INFO     | . stage-in = 0 s
[2025-12-02 05:58:34] 2025-12-02 04:57:47,576 | INFO     | . payload execution = 83551 s
[2025-12-02 05:58:34] 2025-12-02 04:57:47,576 | INFO     | . stage-out = 5 s
[2025-12-02 05:58:34] 2025-12-02 04:57:47,576 | INFO     | . log creation = 2 s
[2025-12-02 05:58:34] 2025-12-02 04:57:47,576 | INFO     | ..............................
[2025-12-02 05:58:34] 2025-12-02 04:57:47,706 | INFO     | 
[2025-12-02 05:58:34] 2025-12-02 04:57:47,706 | INFO     | job summary report
[2025-12-02 05:58:34] 2025-12-02 04:57:47,706 | INFO     | --------------------------------------------------
[2025-12-02 05:58:34] 2025-12-02 04:57:47,706 | INFO     | PanDA job id: 6900286011
[2025-12-02 05:58:34] 2025-12-02 04:57:47,706 | INFO     | task id: 47556185
[2025-12-02 05:58:34] 2025-12-02 04:57:47,706 | INFO     | errors: (none)
[2025-12-02 05:58:34] 2025-12-02 04:57:47,706 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 05:58:34] 2025-12-02 04:57:47,706 | INFO     | pilot state: finished 
[2025-12-02 05:58:34] 2025-12-02 04:57:47,706 | INFO     | transexitcode: 0
[2025-12-02 05:58:34] 2025-12-02 04:57:47,707 | INFO     | exeerrorcode: 0
[2025-12-02 05:58:34] 2025-12-02 04:57:47,707 | INFO     | exeerrordiag: 
[2025-12-02 05:58:34] 2025-12-02 04:57:47,707 | INFO     | exitcode: 0
[2025-12-02 05:58:34] 2025-12-02 04:57:47,707 | INFO     | exitmsg: OK
[2025-12-02 05:58:34] 2025-12-02 04:57:47,707 | INFO     | cpuconsumptiontime: 316300 s
[2025-12-02 05:58:34] 2025-12-02 04:57:47,707 | INFO     | nevents: 1000
[2025-12-02 05:58:34] 2025-12-02 04:57:47,707 | INFO     | neventsw: 0
[2025-12-02 05:58:34] 2025-12-02 04:57:47,707 | INFO     | pid: 17175
[2025-12-02 05:58:34] 2025-12-02 04:57:47,707 | INFO     | pgrp: 17175
[2025-12-02 05:58:34] 2025-12-02 04:57:47,707 | INFO     | corecount: 8
[2025-12-02 05:58:34] 2025-12-02 04:57:47,707 | INFO     | event service: False
[2025-12-02 05:58:34] 2025-12-02 04:57:47,708 | INFO     | sizes: {0: 2284317, 1: 2284317, 10: 2284607, 11: 2284635, 83567: 2344924, 83573: 2353920, 83575: 2354104, 83669: 2354350}
[2025-12-02 05:58:34] 2025-12-02 04:57:47,708 | INFO     | --------------------------------------------------
[2025-12-02 05:58:34] 2025-12-02 04:57:47,708 | INFO     | 
[2025-12-02 05:58:34] 2025-12-02 04:57:47,708 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-12-02 05:58:34] 2025-12-02 04:57:48,094 | INFO     | time since job start (83689s) is within the limit (172800.0s)
[2025-12-02 05:58:34] 2025-12-02 04:57:48,146 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,146 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,146 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,146 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,146 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,146 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,146 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,147 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,147 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,147 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,147 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,147 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,147 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,147 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,147 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,148 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,148 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,148 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 05:58:34] 2025-12-02 04:57:48,148 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,148 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 05:58:34] 2025-12-02 04:57:48,148 | INFO     | job 6900286011 has completed (purged errors)
[2025-12-02 05:58:34] 2025-12-02 04:57:48,148 | INFO     | overall cleanup function is called
[2025-12-02 05:58:34] 2025-12-02 04:57:49,170 | INFO     | --- collectZombieJob: --- 10, [17175]
[2025-12-02 05:58:34] 2025-12-02 04:57:49,170 | INFO     | zombie collector waiting for pid 17175
[2025-12-02 05:58:34] 2025-12-02 04:57:49,170 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 05:58:34] 2025-12-02 04:57:49,170 | INFO     | collected zombie processes
[2025-12-02 05:58:34] 2025-12-02 04:57:49,170 | INFO     | will attempt to kill all subprocesses of pid=17175
[2025-12-02 05:58:34] 2025-12-02 04:57:49,285 | INFO     | process IDs to be killed: [17175] (in reverse order)
[2025-12-02 05:58:34] 2025-12-02 04:57:50,211 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 05:58:34] 2025-12-02 04:57:50,212 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 05:58:34] 2025-12-02 04:57:50,215 | INFO     | did not find any defunct processes belonging to 17175
[2025-12-02 05:58:34] 2025-12-02 04:57:50,217 | INFO     | did not find any defunct processes belonging to 17175
[2025-12-02 05:58:34] 2025-12-02 04:57:50,277 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 05:58:34] 2025-12-02 04:57:50,277 | INFO     | ready for new job
[2025-12-02 05:58:34] 2025-12-02 04:57:50,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 05:58:34] 2025-12-02 04:57:50,283 | INFO     | ***************************************
[2025-12-02 05:58:34] 2025-12-02 04:57:50,283 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 05:58:34] 2025-12-02 04:57:50,283 | INFO     | ***************************************
[2025-12-02 05:58:34] 2025-12-02 04:57:50,283 | INFO     | 
[2025-12-02 05:58:34] 2025-12-02 04:57:50,284 | INFO     | pilot is running in a VM
[2025-12-02 05:58:34] 2025-12-02 04:57:50,284 | INFO     | architecture information:
[2025-12-02 05:58:34] 2025-12-02 04:57:50,298 | INFO     | executing command: cat /etc/os-release
[2025-12-02 05:58:34] 2025-12-02 04:57:50,565 | INFO     | cat /etc/os-release:
[2025-12-02 05:58:34] NAME="CentOS Linux"
[2025-12-02 05:58:34] VERSION="7 (Core)"
[2025-12-02 05:58:34] ID="centos"
[2025-12-02 05:58:34] ID_LIKE="rhel fedora"
[2025-12-02 05:58:34] VERSION_ID="7"
[2025-12-02 05:58:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 05:58:34] ANSI_COLOR="0;31"
[2025-12-02 05:58:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 05:58:34] HOME_URL="https://www.centos.org/"
[2025-12-02 05:58:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 05:58:34] 
[2025-12-02 05:58:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 05:58:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 05:58:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 05:58:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 05:58:34] 
[2025-12-02 05:58:34] 2025-12-02 04:57:50,566 | INFO     | ***************************************
[2025-12-02 05:58:34] 2025-12-02 04:57:51,069 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-12-02 05:58:34] 2025-12-02 04:57:51,281 | INFO     | sufficient remaining disk space (488173993984 B)
[2025-12-02 05:58:34] 2025-12-02 04:57:51,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 05:58:34] 2025-12-02 04:57:51,282 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 05:58:34] 2025-12-02 04:57:51,282 | INFO     | update_server=False
[2025-12-02 05:58:34] 2025-12-02 04:57:51,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 05:58:34] 2025-12-02 04:57:51,283 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 05:58:34] 2025-12-02 04:57:51,283 | INFO     | aborting loop
[2025-12-02 05:58:34] 2025-12-02 04:57:51,824 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 05:58:34] 2025-12-02 04:57:52,288 | INFO     | [job] retrieve thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:52,288 | INFO     | [job] job monitor thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:52,341 | INFO     | all data control threads have been joined
[2025-12-02 05:58:34] 2025-12-02 04:57:52,423 | INFO     | all payload control threads have been joined
[2025-12-02 05:58:34] 2025-12-02 04:57:52,480 | INFO     | [job] validate thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:52,491 | INFO     | all job control threads have been joined
[2025-12-02 05:58:34] 2025-12-02 04:57:52,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 05:58:34] 2025-12-02 04:57:52,781 | INFO     | [payload] validate_post thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:52,810 | INFO     | [payload] failed_post thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:52,997 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:53,173 | INFO     | [data] copytool_in thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:53,252 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:53,347 | INFO     | [data] control thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:53,429 | INFO     | [payload] control thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:53,494 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:53,497 | INFO     | [job] control thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:53,675 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:53,726 | INFO     | [job] queue monitor thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:53,831 | INFO     | [data] copytool_out thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:57:54,196 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 05:58:34] 2025-12-02 04:57:58,205 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 05:58:34] 2025-12-02 04:58:21,247 | INFO     | PID=10686 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 05:58:34] 2025-12-02 04:58:21,248 | INFO     | .. there are 9 such processes running
[2025-12-02 05:58:34] 2025-12-02 04:58:21,249 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 05:58:34] 2025-12-02 04:58:21,249 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 05:58:34] 2025-12-02 04:58:21,249 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 05:58:34] 2025-12-02 04:58:24,442 | INFO     | [monitor] cgroup control has ended
[2025-12-02 05:58:34] 2025-12-02 04:58:25,453 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140179111999296)>', '<ExcThread(monitor, started 140178387621632)>']
[2025-12-02 05:58:34] 2025-12-02 04:58:26,279 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 05:58:34] 2025-12-02 04:58:26,279 | INFO     | [monitor] control thread has ended
[2025-12-02 05:58:34] 2025-12-02 04:58:30,479 | INFO     | all workflow threads have been joined
[2025-12-02 05:58:34] 2025-12-02 04:58:30,479 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 05:58:34] 2025-12-02 04:58:30,479 | INFO     | traces error code: 0
[2025-12-02 05:58:34] 2025-12-02 04:58:30,480 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 05:58:34] 2025-12-02 04:58:30,824 [wrapper] ==== pilot stdout END ====
[2025-12-02 05:58:34] 2025-12-02 04:58:30,892 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 05:58:34] 2025-12-02 04:58:30,985 [wrapper] pilotpid: 10686
[2025-12-02 05:58:34] 2025-12-02 04:58:31,088 [wrapper] Pilot exit status: 0
[2025-12-02 05:58:34] 2025-12-02 04:58:31,530 [wrapper] pandaids: 6900286011
[2025-12-02 05:58:34] 2025-12-02 04:58:32,375 [wrapper] cleanup supervisor_pilot 13749 10687
[2025-12-02 05:58:34] 2025-12-02 04:58:32,417 [wrapper] Test setup, not cleaning
[2025-12-02 05:58:34] 2025-12-02 04:58:32,502 [wrapper] apfmon messages muted
[2025-12-02 05:58:34] 2025-12-02 04:58:32,597 [wrapper] ==== wrapper stdout END ====
[2025-12-02 05:58:34] 2025-12-02 04:58:32,689 [wrapper] ==== wrapper stderr END ====
[2025-12-02 05:58:34]  *** Error codes and diagnostics ***
[2025-12-02 05:58:34]     "exeErrorCode": 0,
[2025-12-02 05:58:34]     "exeErrorDiag": "",
[2025-12-02 05:58:34]     "pilotErrorCode": 0,
[2025-12-02 05:58:34]     "pilotErrorDiag": "",
[2025-12-02 05:58:34]  *** Listing of results directory ***
[2025-12-02 05:58:34] total 1310604
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc    576529 Nov 27 17:16 pilot3.tar.gz
[2025-12-02 05:58:34] -rwx------. 1 boinc boinc     36292 Nov 27 17:17 runpilot2-wrapper.sh
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc      5112 Nov 27 17:18 queuedata.json
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc       100 Dec  1 06:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 05:58:34] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 06:42 run_atlas
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc       105 Dec  1 06:42 job.xml
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc      6393 Dec  1 06:42 init_data.xml
[2025-12-02 05:58:34] -rw-r--r--. 2 boinc boinc 408955673 Dec  1 06:42 EVNT.47483658._004412.pool.root.1
[2025-12-02 05:58:34] -rw-r--r--. 2 boinc boinc     15847 Dec  1 06:42 start_atlas.sh
[2025-12-02 05:58:34] drwxrwx--x. 2 boinc boinc        68 Dec  1 06:42 shared
[2025-12-02 05:58:34] -rw-r--r--. 2 boinc boinc    590107 Dec  1 06:42 input.tar.gz
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc         0 Dec  1 06:42 boinc_lockfile
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc      2787 Dec  1 06:42 pandaJob.out
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc    992521 Dec  1 06:42 agis_schedconf.cvmfs.json
[2025-12-02 05:58:34] drwx------. 5 boinc boinc      4096 Dec  1 06:42 pilot3
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc       533 Dec  2 05:29 boinc_task_state.xml
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc 902102485 Dec  2 05:54 HITS.47556185._001760.pool.root.1
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc      1032 Dec  2 05:56 memory_monitor_summary.json
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc   1516240 Dec  2 05:56 agis_ddmendpoints.agis.ALL.json
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc   2437533 Dec  2 05:56 log.47556185._001760.job.log.tgz.1
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc      8636 Dec  2 05:57 heartbeat.json
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc        29 Dec  2 05:58 wrapper_checkpoint.txt
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc      8192 Dec  2 05:58 boinc_mmap_file
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc        95 Dec  2 05:58 pilot_heartbeat.json
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc      4885 Dec  2 05:58 pilotlog.txt
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc  11107122 Dec  2 05:58 log.47556185._001760.job.log.1
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc       353 Dec  2 05:58 output.list
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc       620 Dec  2 05:58 runtime_log
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc  13568000 Dec  2 05:58 result.tar.gz
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc       662 Dec  2 05:58 Xz5MDmlrti8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMmKKDmYFk39m.diag
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc      8833 Dec  2 05:58 runtime_log.err
[2025-12-02 05:58:34] -rw-r--r--. 1 boinc boinc     21467 Dec  2 05:58 stderr.txt
[2025-12-02 05:58:34] HITS file was successfully produced:
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc 902102485 Dec  2 05:54 shared/HITS.pool.root.1
[2025-12-02 05:58:34]  *** Contents of shared directory: ***
[2025-12-02 05:58:34] total 1294180
[2025-12-02 05:58:34] -rw-r--r--. 2 boinc boinc 408955673 Dec  1 06:42 ATLAS.root_0
[2025-12-02 05:58:34] -rw-r--r--. 2 boinc boinc     15847 Dec  1 06:42 start_atlas.sh
[2025-12-02 05:58:34] -rw-r--r--. 2 boinc boinc    590107 Dec  1 06:42 input.tar.gz
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc 902102485 Dec  2 05:54 HITS.pool.root.1
[2025-12-02 05:58:34] -rw-------. 1 boinc boinc  13568000 Dec  2 05:58 result.tar.gz
05:58:36 (6864): run_atlas exited; CPU time 316858.954705
05:58:36 (6864): called boinc_finish(0)

</stderr_txt>
]]>

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