Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:58:40 (13730): wrapper (7.7.26015): starting
00:58:40 (13730): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 00:58:40] Arguments: --nthreads 8
[2025-11-29 00:58:40] Threads: 8
[2025-11-29 00:58:40] Checking for CVMFS
[2025-11-29 00:58:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 00:58:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 00:58:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 00:58:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 00:58:40] 2.11.2.0 7040 121613 143492 153432 0 82 18113739 18432000 1885 130560 0 88424047 99.975 5015720 31352 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 00:58:40] CVMFS is ok
[2025-11-29 00:58:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 00:58:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 00:58:40] Further information can be found at the LHC@home message board.
[2025-11-29 00:58:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 00:58:40] Checking for apptainer binary...
[2025-11-29 00:58:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 00:58:40] Running /usr/bin/apptainer --version
[2025-11-29 00:58:40] apptainer version 1.3.2-1.el7
[2025-11-29 00:58:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 00:58:41] c-206-7.aglt2.org
[2025-11-29 00:58:41] apptainer works
[2025-11-29 00:58:41] Set ATHENA_PROC_NUMBER=8
[2025-11-29 00:58:41] Set ATHENA_CORE_NUMBER=8
[2025-11-29 00:58:41] Starting ATLAS job with PandaID=6894254052
[2025-11-29 00:58:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 20:36:06]  *** The last 200 lines of the pilot log: ***
[2025-11-29 20:36:06] 2025-11-30 01:35:32,404 | INFO     | time since job start (70600s) is within the limit (172800.0s)
[2025-11-29 20:36:06] 2025-11-30 01:35:33,610 | INFO     | PID=17400 has CPU usage=17.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-29 20:36:06] 2025-11-30 01:35:33,611 | INFO     | .. there are 3 such processes running
[2025-11-29 20:36:06] 2025-11-30 01:35:33,718 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-29 20:36:06] 2025-11-30 01:35:33,723 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2483.5
[2025-11-29 20:36:06] 2025-11-30 01:35:33,726 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6894254052/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 20:36:06] 2025-11-30 01:35:33,726 | INFO     | extracted standard info from prmon json
[2025-11-29 20:36:06] 2025-11-30 01:35:33,726 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 20:36:06] 2025-11-30 01:35:33,726 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 20:36:06] 2025-11-30 01:35:33,741 | INFO     | fitting pss+swap vs Time
[2025-11-29 20:36:06] 2025-11-30 01:35:33,743 | INFO     | sum of square deviations: 480257765114.6934
[2025-11-29 20:36:06] 2025-11-30 01:35:33,767 | INFO     | sum of deviations: 2445417202051.604
[2025-11-29 20:36:06] 2025-11-30 01:35:33,768 | INFO     | mean x: 1764431215.5859983
[2025-11-29 20:36:06] 2025-11-30 01:35:33,768 | INFO     | mean y: 2871217.6421780465
[2025-11-29 20:36:06] 2025-11-30 01:35:33,768 | INFO     | intersect: -8981409224.758133
[2025-11-29 20:36:06] 2025-11-30 01:35:33,769 | INFO     | chi2: 5.397015409938512
[2025-11-29 20:36:06] 2025-11-30 01:35:33,770 | INFO     | sum of square deviations: 474058451012.9684
[2025-11-29 20:36:06] 2025-11-30 01:35:33,814 | INFO     | sum of deviations: 2792821841876.8135
[2025-11-29 20:36:06] 2025-11-30 01:35:33,814 | INFO     | mean x: 1764431063.0885417
[2025-11-29 20:36:06] 2025-11-30 01:35:33,814 | INFO     | mean y: 2879761.6979166665
[2025-11-29 20:36:06] 2025-11-30 01:35:33,815 | INFO     | intersect: -10391917759.47274
[2025-11-29 20:36:06] 2025-11-30 01:35:33,816 | INFO     | chi2: 2.7555154885715294
[2025-11-29 20:36:06] 2025-11-30 01:35:33,816 | INFO     | current chi2=2.7555154885715294 (change=48.94371649379962 %)
[2025-11-29 20:36:06] 2025-11-30 01:35:33,818 | INFO     | sum of square deviations: 467912719311.2296
[2025-11-29 20:36:06] 2025-11-30 01:35:33,863 | INFO     | sum of deviations: 2895963291409.906
[2025-11-29 20:36:06] 2025-11-30 01:35:33,863 | INFO     | mean x: 1764430910.5911071
[2025-11-29 20:36:06] 2025-11-30 01:35:33,863 | INFO     | mean y: 2882317.4027898866
[2025-11-29 20:36:06] 2025-11-30 01:35:33,863 | INFO     | intersect: -10917374680.14656
[2025-11-29 20:36:06] 2025-11-30 01:35:33,865 | INFO     | chi2: 2.3588634134292232
[2025-11-29 20:36:06] 2025-11-30 01:35:33,865 | INFO     | current chi2=2.3588634134292232 (change=14.394841066487063 %)
[2025-11-29 20:36:06] 2025-11-30 01:35:33,865 | INFO     | right removable region: 1146
[2025-11-29 20:36:06] 2025-11-30 01:35:33,867 | INFO     | sum of square deviations: 474058037432.96875
[2025-11-29 20:36:06] 2025-11-30 01:35:33,911 | INFO     | sum of deviations: 2145098050473.0146
[2025-11-29 20:36:06] 2025-11-30 01:35:33,911 | INFO     | mean x: 1764431368.0885417
[2025-11-29 20:36:06] 2025-11-30 01:35:33,912 | INFO     | mean y: 2878596.7057291665
[2025-11-29 20:36:06] 2025-11-30 01:35:33,912 | INFO     | intersect: -7981119118.796229
[2025-11-29 20:36:06] 2025-11-30 01:35:33,914 | INFO     | chi2: 3.3752006841407463
[2025-11-29 20:36:06] 2025-11-30 01:35:33,914 | INFO     | current chi2=3.3752006841407463 (change=37.461718602371015 %)
[2025-11-29 20:36:06] 2025-11-30 01:35:33,916 | INFO     | sum of square deviations: 467912103089.7672
[2025-11-29 20:36:06] 2025-11-30 01:35:33,960 | INFO     | sum of deviations: 2069430881386.144
[2025-11-29 20:36:06] 2025-11-30 01:35:33,960 | INFO     | mean x: 1764431520.5884917
[2025-11-29 20:36:06] 2025-11-30 01:35:33,960 | INFO     | mean y: 2880473.9197907583
[2025-11-29 20:36:06] 2025-11-30 01:35:33,961 | INFO     | intersect: -7800655815.664996
[2025-11-29 20:36:06] 2025-11-30 01:35:33,962 | INFO     | chi2: 3.3296395350605277
[2025-11-29 20:36:06] 2025-11-30 01:35:33,963 | INFO     | current chi2=3.3296395350605277 (change=1.3498797062438221 %)
[2025-11-29 20:36:06] 2025-11-30 01:35:33,963 | INFO     | left removable region: 20
[2025-11-29 20:36:06] 2025-11-30 01:35:33,965 | INFO     | sum of square deviations: 442679420356.83203
[2025-11-29 20:36:06] 2025-11-30 01:35:34,007 | INFO     | sum of deviations: 2427433207446.0635
[2025-11-29 20:36:06] 2025-11-30 01:35:34,008 | INFO     | mean x: 1764431490.0950267
[2025-11-29 20:36:06] 2025-11-30 01:35:34,008 | INFO     | mean y: 2894519.046181172
[2025-11-29 20:36:06] 2025-11-30 01:35:34,008 | INFO     | intersect: -9672367971.963146
[2025-11-29 20:36:06] 2025-11-30 01:35:34,010 | INFO     | chi2: 0.24724268816975672
[2025-11-29 20:36:06] 2025-11-30 01:35:34,010 | INFO     | current memory leak: 5.48 B/s (using 1126 data points, chi2=0.25)
[2025-11-29 20:36:06] 2025-11-30 01:35:34,011 | INFO     | could have reported an average CPU frequency of 2633 MHz (42 samples)
[2025-11-29 20:36:06] 2025-11-30 01:35:34,012 | INFO     | ..............................
[2025-11-29 20:36:06] 2025-11-30 01:35:34,012 | INFO     | . Timing measurements:
[2025-11-29 20:36:06] 2025-11-30 01:35:34,012 | INFO     | . get job = 0 s
[2025-11-29 20:36:06] 2025-11-30 01:35:34,012 | INFO     | . initial setup = 2 s
[2025-11-29 20:36:06] 2025-11-30 01:35:34,012 | INFO     | . payload setup = 5 s
[2025-11-29 20:36:06] 2025-11-30 01:35:34,012 | INFO     | . stage-in = 0 s
[2025-11-29 20:36:06] 2025-11-30 01:35:34,012 | INFO     | . payload execution = 70566 s
[2025-11-29 20:36:06] 2025-11-30 01:35:34,013 | INFO     | . stage-out = 3 s
[2025-11-29 20:36:06] 2025-11-30 01:35:34,013 | INFO     | . log creation = 0 s
[2025-11-29 20:36:06] 2025-11-30 01:35:34,013 | INFO     | ..............................
[2025-11-29 20:36:06] 2025-11-30 01:35:34,105 | INFO     | 
[2025-11-29 20:36:06] 2025-11-30 01:35:34,105 | INFO     | job summary report
[2025-11-29 20:36:06] 2025-11-30 01:35:34,106 | INFO     | --------------------------------------------------
[2025-11-29 20:36:06] 2025-11-30 01:35:34,106 | INFO     | PanDA job id: 6894254052
[2025-11-29 20:36:06] 2025-11-30 01:35:34,106 | INFO     | task id: 47533962
[2025-11-29 20:36:06] 2025-11-30 01:35:34,106 | INFO     | errors: (none)
[2025-11-29 20:36:06] 2025-11-30 01:35:34,106 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 20:36:06] 2025-11-30 01:35:34,106 | INFO     | pilot state: finished 
[2025-11-29 20:36:06] 2025-11-30 01:35:34,106 | INFO     | transexitcode: 0
[2025-11-29 20:36:06] 2025-11-30 01:35:34,106 | INFO     | exeerrorcode: 0
[2025-11-29 20:36:06] 2025-11-30 01:35:34,106 | INFO     | exeerrordiag: 
[2025-11-29 20:36:06] 2025-11-30 01:35:34,106 | INFO     | exitcode: 0
[2025-11-29 20:36:06] 2025-11-30 01:35:34,107 | INFO     | exitmsg: OK
[2025-11-29 20:36:06] 2025-11-30 01:35:34,107 | INFO     | cpuconsumptiontime: 547260 s
[2025-11-29 20:36:06] 2025-11-30 01:35:34,107 | INFO     | nevents: 1000
[2025-11-29 20:36:06] 2025-11-30 01:35:34,107 | INFO     | neventsw: 0
[2025-11-29 20:36:06] 2025-11-30 01:35:34,107 | INFO     | pid: 23894
[2025-11-29 20:36:06] 2025-11-30 01:35:34,107 | INFO     | pgrp: 23894
[2025-11-29 20:36:06] 2025-11-30 01:35:34,107 | INFO     | corecount: 8
[2025-11-29 20:36:06] 2025-11-30 01:35:34,107 | INFO     | event service: False
[2025-11-29 20:36:06] 2025-11-30 01:35:34,107 | INFO     | sizes: {0: 2284194, 1: 2284336, 4: 2284598, 11: 2284626, 70575: 2341420, 70576: 2341419, 70580: 2350653, 70586: 2350843}
[2025-11-29 20:36:06] 2025-11-30 01:35:34,107 | INFO     | --------------------------------------------------
[2025-11-29 20:36:06] 2025-11-30 01:35:34,108 | INFO     | 
[2025-11-29 20:36:06] 2025-11-30 01:35:34,108 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-29 20:36:06] 2025-11-30 01:35:34,126 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,126 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,126 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,126 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,127 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,127 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,127 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,127 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,127 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,128 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,128 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,128 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,128 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,128 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,129 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,129 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,129 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,129 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 20:36:06] 2025-11-30 01:35:34,129 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,130 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 20:36:06] 2025-11-30 01:35:34,130 | INFO     | job 6894254052 has completed (purged errors)
[2025-11-29 20:36:06] 2025-11-30 01:35:34,130 | INFO     | overall cleanup function is called
[2025-11-29 20:36:06] 2025-11-30 01:35:35,142 | INFO     | --- collectZombieJob: --- 10, [23894]
[2025-11-29 20:36:06] 2025-11-30 01:35:35,142 | INFO     | zombie collector waiting for pid 23894
[2025-11-29 20:36:06] 2025-11-30 01:35:35,142 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 20:36:06] 2025-11-30 01:35:35,142 | INFO     | collected zombie processes
[2025-11-29 20:36:06] 2025-11-30 01:35:35,143 | INFO     | will attempt to kill all subprocesses of pid=23894
[2025-11-29 20:36:06] 2025-11-30 01:35:35,310 | INFO     | process IDs to be killed: [23894] (in reverse order)
[2025-11-29 20:36:06] 2025-11-30 01:35:35,375 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 20:36:06] 2025-11-30 01:35:35,375 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 20:36:06] 2025-11-30 01:35:35,381 | INFO     | did not find any defunct processes belonging to 23894
[2025-11-29 20:36:06] 2025-11-30 01:35:35,385 | INFO     | did not find any defunct processes belonging to 23894
[2025-11-29 20:36:06] 2025-11-30 01:35:35,387 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 20:36:06] 2025-11-30 01:35:35,387 | INFO     | ready for new job
[2025-11-29 20:36:06] 2025-11-30 01:35:35,388 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 20:36:06] 2025-11-30 01:35:35,393 | INFO     | ***************************************
[2025-11-29 20:36:06] 2025-11-30 01:35:35,393 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 20:36:06] 2025-11-30 01:35:35,393 | INFO     | ***************************************
[2025-11-29 20:36:06] 2025-11-30 01:35:35,393 | INFO     | 
[2025-11-29 20:36:06] 2025-11-30 01:35:35,394 | INFO     | architecture information:
[2025-11-29 20:36:06] 2025-11-30 01:35:35,395 | INFO     | executing command: cat /etc/os-release
[2025-11-29 20:36:06] 2025-11-30 01:35:35,410 | INFO     | cat /etc/os-release:
[2025-11-29 20:36:06] NAME="CentOS Linux"
[2025-11-29 20:36:06] VERSION="7 (Core)"
[2025-11-29 20:36:06] ID="centos"
[2025-11-29 20:36:06] ID_LIKE="rhel fedora"
[2025-11-29 20:36:06] VERSION_ID="7"
[2025-11-29 20:36:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 20:36:06] ANSI_COLOR="0;31"
[2025-11-29 20:36:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 20:36:06] HOME_URL="https://www.centos.org/"
[2025-11-29 20:36:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 20:36:06] 
[2025-11-29 20:36:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 20:36:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 20:36:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 20:36:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 20:36:06] 
[2025-11-29 20:36:06] 2025-11-30 01:35:35,410 | INFO     | ***************************************
[2025-11-29 20:36:06] 2025-11-30 01:35:35,914 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-29 20:36:06] 2025-11-30 01:35:35,944 | INFO     | sufficient remaining disk space (26606567424 B)
[2025-11-29 20:36:06] 2025-11-30 01:35:35,944 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 20:36:06] 2025-11-30 01:35:35,945 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 20:36:06] 2025-11-30 01:35:35,945 | INFO     | update_server=False
[2025-11-29 20:36:06] 2025-11-30 01:35:35,945 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 20:36:06] 2025-11-30 01:35:35,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 20:36:06] 2025-11-30 01:35:35,946 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 20:36:06] 2025-11-30 01:35:35,946 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 20:36:06] 2025-11-30 01:35:35,946 | INFO     | aborting loop
[2025-11-29 20:36:06] 2025-11-30 01:35:36,714 | INFO     | all data control threads have been joined
[2025-11-29 20:36:06] 2025-11-30 01:35:36,826 | INFO     | all job control threads have been joined
[2025-11-29 20:36:06] 2025-11-30 01:35:36,947 | INFO     | [job] retrieve thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:36,947 | INFO     | [job] queue monitor thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:36,952 | INFO     | [job] job monitor thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:37,116 | INFO     | all payload control threads have been joined
[2025-11-29 20:36:06] 2025-11-30 01:35:37,340 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:37,370 | INFO     | [payload] validate_post thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:37,391 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:37,448 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:37,479 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:37,480 | INFO     | [data] copytool_in thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:37,720 | INFO     | [data] control thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:37,832 | INFO     | [job] control thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:37,851 | INFO     | [payload] failed_post thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:37,953 | INFO     | [data] copytool_out thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:38,112 | INFO     | [job] validate thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:38,121 | INFO     | [payload] control thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:38,673 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 20:36:06] 2025-11-30 01:35:42,677 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 20:36:06] 2025-11-30 01:35:49,315 | INFO     | [monitor] cgroup control has ended
[2025-11-29 20:36:06] 2025-11-30 01:35:50,886 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140335563876160)>', '<ExcThread(monitor, started 140335262967552)>']
[2025-11-29 20:36:06] 2025-11-30 01:35:55,905 | INFO     | all workflow threads have been joined
[2025-11-29 20:36:06] 2025-11-30 01:35:55,905 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 20:36:06] 2025-11-30 01:35:55,905 | INFO     | traces error code: 0
[2025-11-29 20:36:06] 2025-11-30 01:35:55,906 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 20:36:06] 2025-11-30 01:36:05,875 | INFO     | PID=17400 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 20:36:06] 2025-11-30 01:36:05,876 | INFO     | .. there are 3 such processes running
[2025-11-29 20:36:06] 2025-11-30 01:36:05,876 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 20:36:06] 2025-11-30 01:36:05,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 20:36:06] 2025-11-30 01:36:05,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 20:36:06] 2025-11-30 01:36:05,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 20:36:06] 2025-11-30 01:36:05,877 | INFO     | [monitor] control thread has ended
[2025-11-29 20:36:06] 2025-11-30 01:36:05,996 [wrapper] ==== pilot stdout END ====
[2025-11-29 20:36:06] 2025-11-30 01:36:05,998 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 20:36:06] 2025-11-30 01:36:05,999 [wrapper] pilotpid: 17400
[2025-11-29 20:36:06] 2025-11-30 01:36:06,001 [wrapper] Pilot exit status: 0
[2025-11-29 20:36:06] 2025-11-30 01:36:06,009 [wrapper] pandaids: 6894254052
[2025-11-29 20:36:06] 2025-11-30 01:36:06,035 [wrapper] cleanup supervisor_pilot  4313 17401
[2025-11-29 20:36:06] 2025-11-30 01:36:06,037 [wrapper] Test setup, not cleaning
[2025-11-29 20:36:06] 2025-11-30 01:36:06,039 [wrapper] apfmon messages muted
[2025-11-29 20:36:06] 2025-11-30 01:36:06,041 [wrapper] ==== wrapper stdout END ====
[2025-11-29 20:36:06] 2025-11-30 01:36:06,043 [wrapper] ==== wrapper stderr END ====
[2025-11-29 20:36:06]  *** Error codes and diagnostics ***
[2025-11-29 20:36:06]     "exeErrorCode": 0,
[2025-11-29 20:36:06]     "exeErrorDiag": "",
[2025-11-29 20:36:06]     "pilotErrorCode": 0,
[2025-11-29 20:36:06]     "pilotErrorDiag": "",
[2025-11-29 20:36:06]  *** Listing of results directory ***
[2025-11-29 20:36:06] total 1338572
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas      5112 Nov 27 11:16 queuedata.json
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas    576529 Nov 27 11:16 pilot3.tar.gz
[2025-11-29 20:36:06] -rwx------ 1 boincer umatlas     36292 Nov 27 11:16 runpilot2-wrapper.sh
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas       100 Nov 29 00:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 20:36:06] -rwxr-xr-x 1 boincer umatlas      7986 Nov 29 00:58 run_atlas
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas       105 Nov 29 00:58 job.xml
[2025-11-29 20:36:06] -rw-r--r-- 2 boincer umatlas 410704985 Nov 29 00:58 EVNT.47493127._001058.pool.root.1
[2025-11-29 20:36:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 00:58 start_atlas.sh
[2025-11-29 20:36:06] drwxrwx--x 2 boincer umatlas      4096 Nov 29 00:58 shared
[2025-11-29 20:36:06] -rw-r--r-- 2 boincer umatlas    590104 Nov 29 00:58 input.tar.gz
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas         0 Nov 29 00:58 boinc_lockfile
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas      2783 Nov 29 00:58 pandaJob.out
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas        57 Nov 29 00:58 setup.sh.local
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas    991826 Nov 29 00:58 agis_schedconf.cvmfs.json
[2025-11-29 20:36:06] drwx------ 5 boincer umatlas      4096 Nov 29 00:58 pilot3
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas       533 Nov 29 20:23 boinc_task_state.xml
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas      5952 Nov 29 20:29 init_data.xml
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas 931910295 Nov 29 20:34 HITS.47533962._000571.pool.root.1
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas        95 Nov 29 20:35 pilot_heartbeat.json
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas      1067 Nov 29 20:35 memory_monitor_summary.json
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas   1516240 Nov 29 20:35 agis_ddmendpoints.agis.ALL.json
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas   2317344 Nov 29 20:35 log.47533962._000571.job.log.tgz.1
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas      8660 Nov 29 20:35 heartbeat.json
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas      8192 Nov 29 20:35 boinc_mmap_file
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas        29 Nov 29 20:35 wrapper_checkpoint.txt
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas       820 Nov 29 20:36 pilotlog.txt
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas   9768872 Nov 29 20:36 log.47533962._000571.job.log.1
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas       353 Nov 29 20:36 output.list
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas       620 Nov 29 20:36 runtime_log
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas  12103680 Nov 29 20:36 result.tar.gz
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas      9338 Nov 29 20:36 runtime_log.err
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas       667 Nov 29 20:36 BGlMDmOqti8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmruNKDmCI1bRo.diag
[2025-11-29 20:36:06] -rw-r--r-- 1 boincer umatlas     21366 Nov 29 20:36 stderr.txt
[2025-11-29 20:36:06] HITS file was successfully produced:
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas 931910295 Nov 29 20:34 shared/HITS.pool.root.1
[2025-11-29 20:36:06]  *** Contents of shared directory: ***
[2025-11-29 20:36:06] total 1323572
[2025-11-29 20:36:06] -rw-r--r-- 2 boincer umatlas 410704985 Nov 29 00:58 ATLAS.root_0
[2025-11-29 20:36:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 00:58 start_atlas.sh
[2025-11-29 20:36:06] -rw-r--r-- 2 boincer umatlas    590104 Nov 29 00:58 input.tar.gz
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas 931910295 Nov 29 20:34 HITS.pool.root.1
[2025-11-29 20:36:06] -rw------- 1 boincer umatlas  12103680 Nov 29 20:36 result.tar.gz
20:36:07 (13730): run_atlas exited; CPU time 546222.975647
20:36:07 (13730): called boinc_finish(0)

</stderr_txt>
]]>

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