Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:47:05 (17154): wrapper (7.7.26015): starting
00:47:05 (17154): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 00:47:06] Arguments: --nthreads 8
[2025-11-29 00:47:06] Threads: 8
[2025-11-29 00:47:06] Checking for CVMFS
[2025-11-29 00:47:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 00:47:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 00:47:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 00:47:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 00:47:06] 2.11.2.0 2781 75528 80124 153432 2 82 13091362 20275200 1 130560 0 21892721 99.880 4167115 33625 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 00:47:06] CVMFS is ok
[2025-11-29 00:47:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 00:47:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 00:47:06] Further information can be found at the LHC@home message board.
[2025-11-29 00:47:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 00:47:06] Checking for apptainer binary...
[2025-11-29 00:47:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 00:47:06] Running /usr/bin/apptainer --version
[2025-11-29 00:47:06] apptainer version 1.3.2-1.el7
[2025-11-29 00:47:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 00:47:08] c-115-16.aglt2.org
[2025-11-29 00:47:08] apptainer works
[2025-11-29 00:47:08] Set ATHENA_PROC_NUMBER=8
[2025-11-29 00:47:08] Set ATHENA_CORE_NUMBER=8
[2025-11-29 00:47:08] Starting ATLAS job with PandaID=6899106277
[2025-11-29 00:47:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 12:02:02]  *** The last 200 lines of the pilot log: ***
[2025-11-29 12:02:02] 2025-11-29 17:01:26,746 | INFO     | time since job start (40441s) is within the limit (172800.0s)
[2025-11-29 12:02:02] 2025-11-29 17:01:28,752 | INFO     | time since job start (40443s) is within the limit (172800.0s)
[2025-11-29 12:02:02] 2025-11-29 17:01:29,041 | INFO     | monitor loop #2976: job 0:6899106277 is in state 'finished'
[2025-11-29 12:02:02] 2025-11-29 17:01:29,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 12:02:02] 2025-11-29 17:01:29,450 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-29 12:02:02] 2025-11-29 17:01:29,455 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1745.75
[2025-11-29 12:02:02] 2025-11-29 17:01:29,457 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6899106277/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 12:02:02] 2025-11-29 17:01:29,458 | INFO     | extracted standard info from prmon json
[2025-11-29 12:02:02] 2025-11-29 17:01:29,458 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 12:02:02] 2025-11-29 17:01:29,458 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 12:02:02] 2025-11-29 17:01:29,470 | INFO     | fitting pss+swap vs Time
[2025-11-29 12:02:02] 2025-11-29 17:01:29,470 | INFO     | sum of square deviations: 90368871176.46458
[2025-11-29 12:02:02] 2025-11-29 17:01:29,479 | INFO     | sum of deviations: 654478987856.0319
[2025-11-29 12:02:02] 2025-11-29 17:01:29,479 | INFO     | mean x: 1764415467.6304677
[2025-11-29 12:02:02] 2025-11-29 17:01:29,479 | INFO     | mean y: 3148434.5429864256
[2025-11-29 12:02:02] 2025-11-29 17:01:29,479 | INFO     | intersect: -12775287705.899382
[2025-11-29 12:02:02] 2025-11-29 17:01:29,480 | INFO     | chi2: 5.761407995848056
[2025-11-29 12:02:02] 2025-11-29 17:01:29,481 | INFO     | sum of square deviations: 88339835036.96217
[2025-11-29 12:02:02] 2025-11-29 17:01:29,489 | INFO     | sum of deviations: 883382049288.7782
[2025-11-29 12:02:02] 2025-11-29 17:01:29,489 | INFO     | mean x: 1764415315.1352584
[2025-11-29 12:02:02] 2025-11-29 17:01:29,490 | INFO     | mean y: 3165624.3844984802
[2025-11-29 12:02:02] 2025-11-29 17:01:29,490 | INFO     | intersect: -17640661944.78105
[2025-11-29 12:02:02] 2025-11-29 17:01:29,490 | INFO     | chi2: 2.9106214889193067
[2025-11-29 12:02:02] 2025-11-29 17:01:29,490 | INFO     | current chi2=2.9106214889193067 (change=49.480726047923724 %)
[2025-11-29 12:02:02] 2025-11-29 17:01:29,491 | INFO     | sum of square deviations: 86341404122.42873
[2025-11-29 12:02:02] 2025-11-29 17:01:29,499 | INFO     | sum of deviations: 951531776925.5798
[2025-11-29 12:02:02] 2025-11-29 17:01:29,500 | INFO     | mean x: 1764415162.6401224
[2025-11-29 12:02:02] 2025-11-29 17:01:29,500 | INFO     | mean y: 3170815.7641653903
[2025-11-29 12:02:02] 2025-11-29 17:01:29,500 | INFO     | intersect: -19441695896.85938
[2025-11-29 12:02:02] 2025-11-29 17:01:29,501 | INFO     | chi2: 2.5381752714219594
[2025-11-29 12:02:02] 2025-11-29 17:01:29,501 | INFO     | current chi2=2.5381752714219594 (change=12.796106223885332 %)
[2025-11-29 12:02:02] 2025-11-29 17:01:29,501 | INFO     | right removable region: 652
[2025-11-29 12:02:02] 2025-11-29 17:01:29,502 | INFO     | sum of square deviations: 88339580056.96214
[2025-11-29 12:02:02] 2025-11-29 17:01:29,510 | INFO     | sum of deviations: 451029432138.3432
[2025-11-29 12:02:02] 2025-11-29 17:01:29,510 | INFO     | mean x: 1764415620.1352584
[2025-11-29 12:02:02] 2025-11-29 17:01:29,510 | INFO     | mean y: 3163695.0972644375
[2025-11-29 12:02:02] 2025-11-29 17:01:29,510 | INFO     | intersect: -9005294061.804989
[2025-11-29 12:02:02] 2025-11-29 17:01:29,511 | INFO     | chi2: 3.363274978829332
[2025-11-29 12:02:02] 2025-11-29 17:01:29,511 | INFO     | current chi2=3.363274978829332 (change=41.624079022817554 %)
[2025-11-29 12:02:02] 2025-11-29 17:01:29,512 | INFO     | sum of square deviations: 86340934056.70749
[2025-11-29 12:02:02] 2025-11-29 17:01:29,520 | INFO     | sum of deviations: 413433812225.9185
[2025-11-29 12:02:02] 2025-11-29 17:01:29,520 | INFO     | mean x: 1764415772.638591
[2025-11-29 12:02:02] 2025-11-29 17:01:29,520 | INFO     | mean y: 3166561.868300153
[2025-11-29 12:02:02] 2025-11-29 17:01:29,520 | INFO     | intersect: -8445539109.469553
[2025-11-29 12:02:02] 2025-11-29 17:01:29,521 | INFO     | chi2: 3.3292951925539747
[2025-11-29 12:02:02] 2025-11-29 17:01:29,521 | INFO     | current chi2=3.3292951925539747 (change=1.0103184095635476 %)
[2025-11-29 12:02:02] 2025-11-29 17:01:29,521 | INFO     | left removable region: 20
[2025-11-29 12:02:02] 2025-11-29 17:01:29,522 | INFO     | sum of square deviations: 78276210121.31415
[2025-11-29 12:02:02] 2025-11-29 17:01:29,530 | INFO     | sum of deviations: 665654071121.882
[2025-11-29 12:02:02] 2025-11-29 17:01:29,530 | INFO     | mean x: 1764415742.147152
[2025-11-29 12:02:02] 2025-11-29 17:01:29,530 | INFO     | mean y: 3192769.5174050634
[2025-11-29 12:02:02] 2025-11-29 17:01:29,530 | INFO     | intersect: -15001244978.446348
[2025-11-29 12:02:02] 2025-11-29 17:01:29,531 | INFO     | chi2: 0.07444582632405483
[2025-11-29 12:02:02] 2025-11-29 17:01:29,531 | INFO     | current memory leak: 8.50 B/s (using 632 data points, chi2=0.07)
[2025-11-29 12:02:02] 2025-11-29 17:01:29,531 | INFO     | could have reported an average CPU frequency of 2378 MHz (26 samples)
[2025-11-29 12:02:02] 2025-11-29 17:01:29,532 | INFO     | ..............................
[2025-11-29 12:02:02] 2025-11-29 17:01:29,532 | INFO     | . Timing measurements:
[2025-11-29 12:02:02] 2025-11-29 17:01:29,532 | INFO     | . get job = 0 s
[2025-11-29 12:02:02] 2025-11-29 17:01:29,532 | INFO     | . initial setup = 2 s
[2025-11-29 12:02:02] 2025-11-29 17:01:29,532 | INFO     | . payload setup = 8 s
[2025-11-29 12:02:02] 2025-11-29 17:01:29,532 | INFO     | . stage-in = 0 s
[2025-11-29 12:02:02] 2025-11-29 17:01:29,532 | INFO     | . payload execution = 40404 s
[2025-11-29 12:02:02] 2025-11-29 17:01:29,532 | INFO     | . stage-out = 3 s
[2025-11-29 12:02:02] 2025-11-29 17:01:29,533 | INFO     | . log creation = 0 s
[2025-11-29 12:02:02] 2025-11-29 17:01:29,533 | INFO     | ..............................
[2025-11-29 12:02:02] 2025-11-29 17:01:29,956 | INFO     | 
[2025-11-29 12:02:02] 2025-11-29 17:01:29,956 | INFO     | job summary report
[2025-11-29 12:02:02] 2025-11-29 17:01:29,956 | INFO     | --------------------------------------------------
[2025-11-29 12:02:02] 2025-11-29 17:01:29,956 | INFO     | PanDA job id: 6899106277
[2025-11-29 12:02:02] 2025-11-29 17:01:29,956 | INFO     | task id: 47556173
[2025-11-29 12:02:02] 2025-11-29 17:01:29,957 | INFO     | errors: (none)
[2025-11-29 12:02:02] 2025-11-29 17:01:29,957 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 12:02:02] 2025-11-29 17:01:29,957 | INFO     | pilot state: finished 
[2025-11-29 12:02:02] 2025-11-29 17:01:29,957 | INFO     | transexitcode: 0
[2025-11-29 12:02:02] 2025-11-29 17:01:29,957 | INFO     | exeerrorcode: 0
[2025-11-29 12:02:02] 2025-11-29 17:01:29,957 | INFO     | exeerrordiag: 
[2025-11-29 12:02:02] 2025-11-29 17:01:29,958 | INFO     | exitcode: 0
[2025-11-29 12:02:02] 2025-11-29 17:01:29,958 | INFO     | exitmsg: OK
[2025-11-29 12:02:02] 2025-11-29 17:01:29,958 | INFO     | cpuconsumptiontime: 314143 s
[2025-11-29 12:02:02] 2025-11-29 17:01:29,958 | INFO     | nevents: 1000
[2025-11-29 12:02:02] 2025-11-29 17:01:29,958 | INFO     | neventsw: 0
[2025-11-29 12:02:02] 2025-11-29 17:01:29,959 | INFO     | pid: 27345
[2025-11-29 12:02:02] 2025-11-29 17:01:29,959 | INFO     | pgrp: 27345
[2025-11-29 12:02:02] 2025-11-29 17:01:29,959 | INFO     | corecount: 8
[2025-11-29 12:02:02] 2025-11-29 17:01:29,959 | INFO     | event service: False
[2025-11-29 12:02:02] 2025-11-29 17:01:29,959 | INFO     | sizes: {0: 2284316, 6: 2284578, 11: 2284606, 40416: 2328397, 40417: 2328396, 40421: 2337630, 40428: 2337820}
[2025-11-29 12:02:02] 2025-11-29 17:01:29,959 | INFO     | --------------------------------------------------
[2025-11-29 12:02:02] 2025-11-29 17:01:29,960 | INFO     | 
[2025-11-29 12:02:02] 2025-11-29 17:01:29,960 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-29 12:02:02] 2025-11-29 17:01:29,989 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,990 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,990 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,990 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,990 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,991 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,991 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,991 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,991 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,991 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,991 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,992 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,992 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,992 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,992 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,992 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,993 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,993 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 12:02:02] 2025-11-29 17:01:29,993 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,993 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 12:02:02] 2025-11-29 17:01:29,993 | INFO     | job 6899106277 has completed (purged errors)
[2025-11-29 12:02:02] 2025-11-29 17:01:29,994 | INFO     | overall cleanup function is called
[2025-11-29 12:02:02] 2025-11-29 17:01:31,006 | INFO     | --- collectZombieJob: --- 10, [27345]
[2025-11-29 12:02:02] 2025-11-29 17:01:31,007 | INFO     | zombie collector waiting for pid 27345
[2025-11-29 12:02:02] 2025-11-29 17:01:31,007 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 12:02:02] 2025-11-29 17:01:31,007 | INFO     | collected zombie processes
[2025-11-29 12:02:02] 2025-11-29 17:01:31,007 | INFO     | will attempt to kill all subprocesses of pid=27345
[2025-11-29 12:02:02] 2025-11-29 17:01:31,095 | INFO     | process IDs to be killed: [27345] (in reverse order)
[2025-11-29 12:02:02] 2025-11-29 17:01:31,152 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 12:02:02] 2025-11-29 17:01:31,153 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 12:02:02] 2025-11-29 17:01:31,157 | INFO     | did not find any defunct processes belonging to 27345
[2025-11-29 12:02:02] 2025-11-29 17:01:31,160 | INFO     | did not find any defunct processes belonging to 27345
[2025-11-29 12:02:02] 2025-11-29 17:01:31,163 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 12:02:02] 2025-11-29 17:01:31,163 | INFO     | ready for new job
[2025-11-29 12:02:02] 2025-11-29 17:01:31,164 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 12:02:02] 2025-11-29 17:01:31,167 | INFO     | ***************************************
[2025-11-29 12:02:02] 2025-11-29 17:01:31,167 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 12:02:02] 2025-11-29 17:01:31,167 | INFO     | ***************************************
[2025-11-29 12:02:02] 2025-11-29 17:01:31,167 | INFO     | 
[2025-11-29 12:02:02] 2025-11-29 17:01:31,168 | INFO     | architecture information:
[2025-11-29 12:02:02] 2025-11-29 17:01:31,169 | INFO     | executing command: cat /etc/os-release
[2025-11-29 12:02:02] 2025-11-29 17:01:31,187 | INFO     | cat /etc/os-release:
[2025-11-29 12:02:02] NAME="CentOS Linux"
[2025-11-29 12:02:02] VERSION="7 (Core)"
[2025-11-29 12:02:02] ID="centos"
[2025-11-29 12:02:02] ID_LIKE="rhel fedora"
[2025-11-29 12:02:02] VERSION_ID="7"
[2025-11-29 12:02:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 12:02:02] ANSI_COLOR="0;31"
[2025-11-29 12:02:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 12:02:02] HOME_URL="https://www.centos.org/"
[2025-11-29 12:02:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 12:02:02] 
[2025-11-29 12:02:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 12:02:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 12:02:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 12:02:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 12:02:02] 
[2025-11-29 12:02:02] 2025-11-29 17:01:31,187 | INFO     | ***************************************
[2025-11-29 12:02:02] 2025-11-29 17:01:31,689 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-29 12:02:02] 2025-11-29 17:01:31,709 | INFO     | sufficient remaining disk space (17466130432 B)
[2025-11-29 12:02:02] 2025-11-29 17:01:31,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 12:02:02] 2025-11-29 17:01:31,710 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 12:02:02] 2025-11-29 17:01:31,710 | INFO     | update_server=False
[2025-11-29 12:02:02] 2025-11-29 17:01:31,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 12:02:02] 2025-11-29 17:01:31,797 | INFO     | [monitor] cgroup control has ended
[2025-11-29 12:02:02] 2025-11-29 17:01:32,548 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 12:02:02] 2025-11-29 17:01:32,549 | INFO     | aborting loop
[2025-11-29 12:02:02] 2025-11-29 17:01:32,596 | INFO     | all data control threads have been joined
[2025-11-29 12:02:02] 2025-11-29 17:01:32,716 | INFO     | [job] retrieve thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:32,896 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:32,990 | INFO     | all job control threads have been joined
[2025-11-29 12:02:02] 2025-11-29 17:01:33,083 | INFO     | all payload control threads have been joined
[2025-11-29 12:02:02] 2025-11-29 17:01:33,089 | INFO     | [payload] failed_post thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:33,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 12:02:02] 2025-11-29 17:01:33,313 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:33,390 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 12:02:02] 2025-11-29 17:01:33,554 | INFO     | [job] job monitor thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:33,568 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:33,602 | INFO     | [data] control thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:33,613 | INFO     | [job] validate thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:33,668 | INFO     | [data] copytool_in thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:33,692 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:33,943 | INFO     | [payload] validate_post thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:33,996 | INFO     | [job] control thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:34,084 | INFO     | [payload] control thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:34,630 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 12:02:02] 2025-11-29 17:01:35,197 | INFO     | [data] copytool_out thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:35,631 | INFO     | [job] queue monitor thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:37,397 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 12:02:02] 2025-11-29 17:01:38,740 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140299392948032)>', '<ExcThread(monitor, started 140298638313216)>']
[2025-11-29 12:02:02] 2025-11-29 17:01:43,743 | INFO     | all workflow threads have been joined
[2025-11-29 12:02:02] 2025-11-29 17:01:43,743 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 12:02:02] 2025-11-29 17:01:43,744 | INFO     | traces error code: 0
[2025-11-29 12:02:02] 2025-11-29 17:01:43,745 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 12:02:02] 2025-11-29 17:02:01,874 | INFO     | PID=20902 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 12:02:02] 2025-11-29 17:02:01,875 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 12:02:02] 2025-11-29 17:02:01,875 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 12:02:02] 2025-11-29 17:02:01,875 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 12:02:02] 2025-11-29 17:02:01,875 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 12:02:02] 2025-11-29 17:02:01,876 | INFO     | [monitor] control thread has ended
[2025-11-29 12:02:02] 2025-11-29 17:02:01,981 [wrapper] ==== pilot stdout END ====
[2025-11-29 12:02:02] 2025-11-29 17:02:01,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 12:02:02] 2025-11-29 17:02:01,990 [wrapper] pilotpid: 20902
[2025-11-29 12:02:02] 2025-11-29 17:02:01,995 [wrapper] Pilot exit status: 0
[2025-11-29 12:02:02] 2025-11-29 17:02:02,013 [wrapper] pandaids: 6899106277
[2025-11-29 12:02:02] 2025-11-29 17:02:02,054 [wrapper] cleanup supervisor_pilot 32554 20903
[2025-11-29 12:02:02] 2025-11-29 17:02:02,058 [wrapper] Test setup, not cleaning
[2025-11-29 12:02:02] 2025-11-29 17:02:02,063 [wrapper] apfmon messages muted
[2025-11-29 12:02:02] 2025-11-29 17:02:02,067 [wrapper] ==== wrapper stdout END ====
[2025-11-29 12:02:02] 2025-11-29 17:02:02,071 [wrapper] ==== wrapper stderr END ====
[2025-11-29 12:02:02]  *** Error codes and diagnostics ***
[2025-11-29 12:02:02]     "exeErrorCode": 0,
[2025-11-29 12:02:02]     "exeErrorDiag": "",
[2025-11-29 12:02:02]     "pilotErrorCode": 0,
[2025-11-29 12:02:02]     "pilotErrorDiag": "",
[2025-11-29 12:02:02]  *** Listing of results directory ***
[2025-11-29 12:02:02] total 1320224
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 20:09 pilot3.tar.gz
[2025-11-29 12:02:02] -rwx------ 1 boincer umatlas     36292 Nov 26 20:26 runpilot2-wrapper.sh
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 20:26 queuedata.json
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas       100 Nov 29 00:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 12:02:02] -rwxr-xr-x 1 boincer umatlas      7986 Nov 29 00:47 run_atlas
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas       105 Nov 29 00:47 job.xml
[2025-11-29 12:02:02] -rw-r--r-- 2 boincer umatlas 410361618 Nov 29 00:47 EVNT.47483658._003253.pool.root.1
[2025-11-29 12:02:02] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 00:47 start_atlas.sh
[2025-11-29 12:02:02] drwxrwx--x 2 boincer umatlas      4096 Nov 29 00:47 shared
[2025-11-29 12:02:02] -rw-r--r-- 2 boincer umatlas    590109 Nov 29 00:47 input.tar.gz
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas         0 Nov 29 00:47 boinc_lockfile
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas      2787 Nov 29 00:47 pandaJob.out
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas        57 Nov 29 00:47 setup.sh.local
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas    991826 Nov 29 00:47 agis_schedconf.cvmfs.json
[2025-11-29 12:02:02] drwx------ 5 boincer umatlas      4096 Nov 29 00:47 pilot3
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas       533 Nov 29 11:51 boinc_task_state.xml
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas      5913 Nov 29 11:58 init_data.xml
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas 922618968 Nov 29 12:00 HITS.47556173._002099.pool.root.1
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas      1061 Nov 29 12:01 memory_monitor_summary.json
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas   1516240 Nov 29 12:01 agis_ddmendpoints.agis.ALL.json
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas   1929594 Nov 29 12:01 log.47556173._002099.job.log.tgz.1
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas      8658 Nov 29 12:01 heartbeat.json
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas      8192 Nov 29 12:02 boinc_mmap_file
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas        29 Nov 29 12:02 wrapper_checkpoint.txt
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas        95 Nov 29 12:02 pilot_heartbeat.json
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas       745 Nov 29 12:02 pilotlog.txt
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas   5575802 Nov 29 12:02 log.47556173._002099.job.log.1
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas       353 Nov 29 12:02 output.list
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas       620 Nov 29 12:02 runtime_log
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas   7526400 Nov 29 12:02 result.tar.gz
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas      9343 Nov 29 12:02 runtime_log.err
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas       668 Nov 29 12:02 MrQNDmTxfi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6MKKDmw88hcm.diag
[2025-11-29 12:02:02] -rw-r--r-- 1 boincer umatlas     21301 Nov 29 12:02 stderr.txt
[2025-11-29 12:02:02] HITS file was successfully produced:
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas 922618968 Nov 29 12:00 shared/HITS.pool.root.1
[2025-11-29 12:02:02]  *** Contents of shared directory: ***
[2025-11-29 12:02:02] total 1309692
[2025-11-29 12:02:02] -rw-r--r-- 2 boincer umatlas 410361618 Nov 29 00:47 ATLAS.root_0
[2025-11-29 12:02:02] -rw-r--r-- 2 boincer umatlas     15847 Nov 29 00:47 start_atlas.sh
[2025-11-29 12:02:02] -rw-r--r-- 2 boincer umatlas    590109 Nov 29 00:47 input.tar.gz
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas 922618968 Nov 29 12:00 HITS.pool.root.1
[2025-11-29 12:02:02] -rw------- 1 boincer umatlas   7526400 Nov 29 12:02 result.tar.gz
12:02:03 (17154): run_atlas exited; CPU time 312320.225443
12:02:03 (17154): called boinc_finish(0)

</stderr_txt>
]]>

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