Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:32:02 (722736): wrapper (7.7.26015): starting
15:32:02 (722736): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 15:32:02] Arguments: --nthreads 8
[2025-11-29 15:32:02] Threads: 8
[2025-11-29 15:32:02] Checking for CVMFS
[2025-11-29 15:32:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 15:32:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 15:32:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 15:32:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 15:32:02] 2.13.2.0 5678 37705 182376 153455 1 422 34075062 39288833 6492 16776704 0 30456058 99.772 20691562 38150 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-29 15:32:02] CVMFS is ok
[2025-11-29 15:32:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 15:32:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 15:32:02] Further information can be found at the LHC@home message board.
[2025-11-29 15:32:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 15:32:02] Checking for apptainer binary...
[2025-11-29 15:32:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 15:32:02] Running /usr/bin/apptainer --version
[2025-11-29 15:32:02] apptainer version 1.4.4-1.el9
[2025-11-29 15:32:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 15:32:03] c-210-21.aglt2.org
[2025-11-29 15:32:03] apptainer works
[2025-11-29 15:32:03] Set ATHENA_PROC_NUMBER=8
[2025-11-29 15:32:03] Set ATHENA_CORE_NUMBER=8
[2025-11-29 15:32:03] Starting ATLAS job with PandaID=6898413629
[2025-11-29 15:32:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 05:22:18]  *** The last 200 lines of the pilot log: ***
[2025-12-01 05:22:18] 2025-12-01 10:21:13,650 | INFO     | time since job start (136140s) is within the limit (172800.0s)
[2025-12-01 05:22:18] 2025-12-01 10:21:14,510 | INFO     | monitor loop #9050: job 0:6898413629 is in state 'finished'
[2025-12-01 05:22:18] 2025-12-01 10:21:14,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 05:22:18] 2025-12-01 10:21:15,595 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 05:22:18] 2025-12-01 10:21:15,606 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2571.1483500000004
[2025-12-01 05:22:18] 2025-12-01 10:21:15,630 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898413629/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 05:22:18] 2025-12-01 10:21:15,631 | INFO     | extracted standard info from prmon json
[2025-12-01 05:22:18] 2025-12-01 10:21:15,631 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 05:22:18] 2025-12-01 10:21:15,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 05:22:18] 2025-12-01 10:21:15,672 | INFO     | time since job start (136142s) is within the limit (172800.0s)
[2025-12-01 05:22:18] 2025-12-01 10:21:15,766 | INFO     | fitting pss+swap vs Time
[2025-12-01 05:22:18] 2025-12-01 10:21:15,770 | INFO     | sum of square deviations: 3443026253009.259
[2025-12-01 05:22:18] 2025-12-01 10:21:16,221 | INFO     | sum of deviations: 13679698450260.436
[2025-12-01 05:22:18] 2025-12-01 10:21:16,221 | INFO     | mean x: 1764516374.5333931
[2025-12-01 05:22:18] 2025-12-01 10:21:16,221 | INFO     | mean y: 2910289.6382787987
[2025-12-01 05:22:18] 2025-12-01 10:21:16,221 | INFO     | intersect: -7007797773.672765
[2025-12-01 05:22:18] 2025-12-01 10:21:16,232 | INFO     | chi2: 8.957987088480566
[2025-12-01 05:22:18] 2025-12-01 10:21:16,252 | INFO     | sum of square deviations: 3419928873969.601
[2025-12-01 05:22:18] 2025-12-01 10:21:16,726 | INFO     | sum of deviations: 14407456916171.104
[2025-12-01 05:22:18] 2025-12-01 10:21:16,726 | INFO     | mean x: 1764516222.0390835
[2025-12-01 05:22:18] 2025-12-01 10:21:16,739 | INFO     | mean y: 2915093.951931716
[2025-12-01 05:22:18] 2025-12-01 10:21:16,739 | INFO     | intersect: -7430628814.054814
[2025-12-01 05:22:18] 2025-12-01 10:21:16,742 | INFO     | chi2: 5.98406601380181
[2025-12-01 05:22:18] 2025-12-01 10:21:16,742 | INFO     | current chi2=5.98406601380181 (change=33.198541651204664 %)
[2025-12-01 05:22:18] 2025-12-01 10:21:16,757 | INFO     | sum of square deviations: 3396935031754.7925
[2025-12-01 05:22:18] 2025-12-01 10:21:17,036 | INFO     | monitor loop #9051: job 0:6898413629 is in state 'finished'
[2025-12-01 05:22:18] 2025-12-01 10:21:17,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 05:22:18] 2025-12-01 10:21:17,040 | INFO     | sum of deviations: 14854824645746.65
[2025-12-01 05:22:18] 2025-12-01 10:21:17,040 | INFO     | mean x: 1764516069.5447996
[2025-12-01 05:22:18] 2025-12-01 10:21:17,040 | INFO     | mean y: 2918060.1292210715
[2025-12-01 05:22:18] 2025-12-01 10:21:17,040 | INFO     | intersect: -7713325127.527416
[2025-12-01 05:22:18] 2025-12-01 10:21:17,052 | INFO     | chi2: 4.6334780191552944
[2025-12-01 05:22:18] 2025-12-01 10:21:17,052 | INFO     | current chi2=4.6334780191552944 (change=22.569737558567756 %)
[2025-12-01 05:22:18] 2025-12-01 10:21:17,052 | INFO     | right removable region: 2220
[2025-12-01 05:22:18] 2025-12-01 10:21:17,055 | INFO     | sum of square deviations: 3419925562100.674
[2025-12-01 05:22:18] 2025-12-01 10:21:17,451 | INFO     | sum of deviations: 13065358654544.625
[2025-12-01 05:22:18] 2025-12-01 10:21:17,460 | INFO     | mean x: 1764516527.0386343
[2025-12-01 05:22:18] 2025-12-01 10:21:17,460 | INFO     | mean y: 2914343.0858041327
[2025-12-01 05:22:18] 2025-12-01 10:21:17,460 | INFO     | intersect: -6738180121.985068
[2025-12-01 05:22:18] 2025-12-01 10:21:17,480 | INFO     | chi2: 6.820184653203878
[2025-12-01 05:22:18] 2025-12-01 10:21:17,481 | INFO     | current chi2=6.820184653203878 (change=23.86476352512021 %)
[2025-12-01 05:22:18] 2025-12-01 10:21:17,481 | INFO     | left removable region: 10
[2025-12-01 05:22:18] 2025-12-01 10:21:17,488 | INFO     | sum of square deviations: 3346705933317.487
[2025-12-01 05:22:18] 2025-12-01 10:21:17,731 | INFO     | time since job start (136144s) is within the limit (172800.0s)
[2025-12-01 05:22:18] 2025-12-01 10:21:17,882 | INFO     | sum of deviations: 14143848516829.893
[2025-12-01 05:22:18] 2025-12-01 10:21:17,883 | INFO     | mean x: 1764516344.0542986
[2025-12-01 05:22:18] 2025-12-01 10:21:17,883 | INFO     | mean y: 2923827.8009049776
[2025-12-01 05:22:18] 2025-12-01 10:21:17,883 | INFO     | intersect: -7454275093.478485
[2025-12-01 05:22:18] 2025-12-01 10:21:17,894 | INFO     | chi2: 2.248112568025258
[2025-12-01 05:22:18] 2025-12-01 10:21:17,899 | INFO     | current memory leak: 4.23 B/s (using 2210 data points, chi2=2.25)
[2025-12-01 05:22:18] 2025-12-01 10:21:17,901 | INFO     | could have reported an average CPU frequency of 2587 MHz (78 samples)
[2025-12-01 05:22:18] 2025-12-01 10:21:17,901 | INFO     | ..............................
[2025-12-01 05:22:18] 2025-12-01 10:21:17,901 | INFO     | . Timing measurements:
[2025-12-01 05:22:18] 2025-12-01 10:21:17,901 | INFO     | . get job = 0 s
[2025-12-01 05:22:18] 2025-12-01 10:21:17,901 | INFO     | . initial setup = 2 s
[2025-12-01 05:22:18] 2025-12-01 10:21:17,901 | INFO     | . payload setup = 5 s
[2025-12-01 05:22:18] 2025-12-01 10:21:17,902 | INFO     | . stage-in = 0 s
[2025-12-01 05:22:18] 2025-12-01 10:21:17,902 | INFO     | . payload execution = 136068 s
[2025-12-01 05:22:18] 2025-12-01 10:21:17,902 | INFO     | . stage-out = 6 s
[2025-12-01 05:22:18] 2025-12-01 10:21:17,902 | INFO     | . log creation = 2 s
[2025-12-01 05:22:18] 2025-12-01 10:21:17,902 | INFO     | ..............................
[2025-12-01 05:22:18] 2025-12-01 10:21:18,134 | INFO     | 
[2025-12-01 05:22:18] 2025-12-01 10:21:18,134 | INFO     | job summary report
[2025-12-01 05:22:18] 2025-12-01 10:21:18,134 | INFO     | --------------------------------------------------
[2025-12-01 05:22:18] 2025-12-01 10:21:18,134 | INFO     | PanDA job id: 6898413629
[2025-12-01 05:22:18] 2025-12-01 10:21:18,134 | INFO     | task id: 47556161
[2025-12-01 05:22:18] 2025-12-01 10:21:18,134 | INFO     | errors: (none)
[2025-12-01 05:22:18] 2025-12-01 10:21:18,134 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 05:22:18] 2025-12-01 10:21:18,135 | INFO     | pilot state: finished 
[2025-12-01 05:22:18] 2025-12-01 10:21:18,135 | INFO     | transexitcode: 0
[2025-12-01 05:22:18] 2025-12-01 10:21:18,135 | INFO     | exeerrorcode: 0
[2025-12-01 05:22:18] 2025-12-01 10:21:18,135 | INFO     | exeerrordiag: 
[2025-12-01 05:22:18] 2025-12-01 10:21:18,135 | INFO     | exitcode: 0
[2025-12-01 05:22:18] 2025-12-01 10:21:18,135 | INFO     | exitmsg: OK
[2025-12-01 05:22:18] 2025-12-01 10:21:18,135 | INFO     | cpuconsumptiontime: 314963 s
[2025-12-01 05:22:18] 2025-12-01 10:21:18,135 | INFO     | nevents: 1000
[2025-12-01 05:22:18] 2025-12-01 10:21:18,135 | INFO     | neventsw: 0
[2025-12-01 05:22:18] 2025-12-01 10:21:18,135 | INFO     | pid: 732841
[2025-12-01 05:22:18] 2025-12-01 10:21:18,136 | INFO     | pgrp: 732841
[2025-12-01 05:22:18] 2025-12-01 10:21:18,136 | INFO     | corecount: 8
[2025-12-01 05:22:18] 2025-12-01 10:21:18,136 | INFO     | event service: False
[2025-12-01 05:22:18] 2025-12-01 10:21:18,136 | INFO     | sizes: {0: 2284145, 1: 2284344, 5: 2284606, 12: 2284662, 136078: 2374587, 136085: 2383581, 136087: 2383765, 136130: 2384011}
[2025-12-01 05:22:18] 2025-12-01 10:21:18,136 | INFO     | --------------------------------------------------
[2025-12-01 05:22:18] 2025-12-01 10:21:18,136 | INFO     | 
[2025-12-01 05:22:18] 2025-12-01 10:21:18,136 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-01 05:22:18] 2025-12-01 10:21:18,229 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,230 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,230 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,230 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,230 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,230 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,230 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,230 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,230 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,231 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,231 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,231 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,231 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,231 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,231 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,231 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,231 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,231 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 05:22:18] 2025-12-01 10:21:18,232 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,232 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 05:22:18] 2025-12-01 10:21:18,232 | INFO     | job 6898413629 has completed (purged errors)
[2025-12-01 05:22:18] 2025-12-01 10:21:18,232 | INFO     | overall cleanup function is called
[2025-12-01 05:22:18] 2025-12-01 10:21:19,267 | INFO     | --- collectZombieJob: --- 10, [732841]
[2025-12-01 05:22:18] 2025-12-01 10:21:19,267 | INFO     | zombie collector waiting for pid 732841
[2025-12-01 05:22:18] 2025-12-01 10:21:19,267 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 05:22:18] 2025-12-01 10:21:19,267 | INFO     | collected zombie processes
[2025-12-01 05:22:18] 2025-12-01 10:21:19,267 | INFO     | will attempt to kill all subprocesses of pid=732841
[2025-12-01 05:22:18] 2025-12-01 10:21:19,787 | INFO     | PID=726416 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 05:22:18] 2025-12-01 10:21:19,787 | INFO     | .. there are 8 such processes running
[2025-12-01 05:22:18] 2025-12-01 10:21:19,995 | INFO     | process IDs to be killed: [732841] (in reverse order)
[2025-12-01 05:22:18] 2025-12-01 10:21:20,107 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 05:22:18] 2025-12-01 10:21:20,108 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 05:22:18] 2025-12-01 10:21:20,152 | INFO     | did not find any defunct processes belonging to 732841
[2025-12-01 05:22:18] 2025-12-01 10:21:20,168 | INFO     | did not find any defunct processes belonging to 732841
[2025-12-01 05:22:18] 2025-12-01 10:21:20,174 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 05:22:18] 2025-12-01 10:21:20,174 | INFO     | ready for new job
[2025-12-01 05:22:18] 2025-12-01 10:21:20,174 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 05:22:18] 2025-12-01 10:21:20,193 | INFO     | ***************************************
[2025-12-01 05:22:18] 2025-12-01 10:21:20,193 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 05:22:18] 2025-12-01 10:21:20,193 | INFO     | ***************************************
[2025-12-01 05:22:18] 2025-12-01 10:21:20,193 | INFO     | 
[2025-12-01 05:22:18] 2025-12-01 10:21:20,199 | INFO     | architecture information:
[2025-12-01 05:22:18] 2025-12-01 10:21:20,200 | INFO     | executing command: cat /etc/os-release
[2025-12-01 05:22:18] 2025-12-01 10:21:20,249 | INFO     | cat /etc/os-release:
[2025-12-01 05:22:18] NAME="CentOS Linux"
[2025-12-01 05:22:18] VERSION="7 (Core)"
[2025-12-01 05:22:18] ID="centos"
[2025-12-01 05:22:18] ID_LIKE="rhel fedora"
[2025-12-01 05:22:18] VERSION_ID="7"
[2025-12-01 05:22:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 05:22:18] ANSI_COLOR="0;31"
[2025-12-01 05:22:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 05:22:18] HOME_URL="https://www.centos.org/"
[2025-12-01 05:22:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 05:22:18] 
[2025-12-01 05:22:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 05:22:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 05:22:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 05:22:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 05:22:18] 
[2025-12-01 05:22:18] 2025-12-01 10:21:20,249 | INFO     | ***************************************
[2025-12-01 05:22:18] 2025-12-01 10:21:20,753 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-01 05:22:18] 2025-12-01 10:21:20,809 | INFO     | sufficient remaining disk space (49633296384 B)
[2025-12-01 05:22:18] 2025-12-01 10:21:20,810 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 05:22:18] 2025-12-01 10:21:20,810 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 05:22:18] 2025-12-01 10:21:20,810 | INFO     | update_server=False
[2025-12-01 05:22:18] 2025-12-01 10:21:20,810 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 05:22:18] 2025-12-01 10:21:20,810 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 05:22:18] 2025-12-01 10:21:20,810 | INFO     | aborting loop
[2025-12-01 05:22:18] 2025-12-01 10:21:21,309 | INFO     | all data control threads have been joined
[2025-12-01 05:22:18] 2025-12-01 10:21:21,428 | INFO     | all payload control threads have been joined
[2025-12-01 05:22:18] 2025-12-01 10:21:21,563 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 05:22:18] 2025-12-01 10:21:21,721 | INFO     | all job control threads have been joined
[2025-12-01 05:22:18] 2025-12-01 10:21:21,816 | INFO     | [job] retrieve thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:21,817 | INFO     | [job] job monitor thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:21,993 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 05:22:18] 2025-12-01 10:21:22,099 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:22,191 | INFO     | [data] copytool_in thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:22,263 | INFO     | [payload] validate_post thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:22,344 | INFO     | [data] control thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:22,349 | INFO     | [job] validate thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:22,351 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:22,451 | INFO     | [payload] control thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:22,683 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:22,726 | INFO     | [job] control thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:22,928 | INFO     | [payload] failed_post thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:23,161 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 05:22:18] 2025-12-01 10:21:23,362 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:23,570 | INFO     | [data] copytool_out thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:24,169 | INFO     | [job] queue monitor thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:26,008 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 05:22:18] 2025-12-01 10:21:50,869 | INFO     | 136150s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-01 05:22:18] 2025-12-01 10:21:52,388 | INFO     | PID=726416 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 05:22:18] 2025-12-01 10:21:52,389 | INFO     | .. there are 8 such processes running
[2025-12-01 05:22:18] 2025-12-01 10:21:52,389 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 05:22:18] 2025-12-01 10:21:52,389 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 05:22:18] 2025-12-01 10:21:52,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 05:22:18] 2025-12-01 10:22:11,202 | INFO     | [monitor] cgroup control has ended
[2025-12-01 05:22:18] 2025-12-01 10:22:12,320 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140492212082496)>', '<ExcThread(monitor, started 140491710514944)>']
[2025-12-01 05:22:18] 2025-12-01 10:22:12,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 05:22:18] 2025-12-01 10:22:12,537 | INFO     | [monitor] control thread has ended
[2025-12-01 05:22:18] 2025-12-01 10:22:17,346 | INFO     | all workflow threads have been joined
[2025-12-01 05:22:18] 2025-12-01 10:22:17,346 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 05:22:18] 2025-12-01 10:22:17,346 | INFO     | traces error code: 0
[2025-12-01 05:22:18] 2025-12-01 10:22:17,347 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 05:22:18] 2025-12-01 10:22:17,620 [wrapper] ==== pilot stdout END ====
[2025-12-01 05:22:18] 2025-12-01 10:22:17,624 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 05:22:18] 2025-12-01 10:22:17,632 [wrapper] pilotpid: 726416
[2025-12-01 05:22:18] 2025-12-01 10:22:17,646 [wrapper] Pilot exit status: 0
[2025-12-01 05:22:18] 2025-12-01 10:22:17,773 [wrapper] pandaids: 6898413629
[2025-12-01 05:22:18] 2025-12-01 10:22:17,999 [wrapper] cleanup supervisor_pilot 4079947 726417
[2025-12-01 05:22:18] 2025-12-01 10:22:18,013 [wrapper] Test setup, not cleaning
[2025-12-01 05:22:18] 2025-12-01 10:22:18,058 [wrapper] apfmon messages muted
[2025-12-01 05:22:18] 2025-12-01 10:22:18,077 [wrapper] ==== wrapper stdout END ====
[2025-12-01 05:22:18] 2025-12-01 10:22:18,080 [wrapper] ==== wrapper stderr END ====
[2025-12-01 05:22:18]  *** Error codes and diagnostics ***
[2025-12-01 05:22:18]     "exeErrorCode": 0,
[2025-12-01 05:22:18]     "exeErrorDiag": "",
[2025-12-01 05:22:18]     "pilotErrorCode": 0,
[2025-12-01 05:22:18]     "pilotErrorDiag": "",
[2025-12-01 05:22:18]  *** Listing of results directory ***
[2025-12-01 05:22:18] total 1332444
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:35 queuedata.json
[2025-12-01 05:22:18] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas       100 Nov 29 15:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 05:22:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 15:32 run_atlas
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas       105 Nov 29 15:32 job.xml
[2025-12-01 05:22:18] -rw-r--r--. 2 boincer umatlas 408203546 Nov 29 15:32 EVNT.47483658._002629.pool.root.1
[2025-12-01 05:22:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 15:32 start_atlas.sh
[2025-12-01 05:22:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 15:32 shared
[2025-12-01 05:22:18] -rw-r--r--. 2 boincer umatlas    590106 Nov 29 15:32 input.tar.gz
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas         0 Nov 29 15:32 boinc_lockfile
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas      2787 Nov 29 15:32 pandaJob.out
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas        57 Nov 29 15:32 setup.sh.local
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas    991826 Nov 29 15:32 agis_schedconf.cvmfs.json
[2025-12-01 05:22:18] drwx------. 5 boincer umatlas      4096 Nov 29 15:32 pilot3
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas       534 Dec  1 05:02 boinc_task_state.xml
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas 909710973 Dec  1 05:19 HITS.47556161._006119.pool.root.1
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas      1072 Dec  1 05:20 memory_monitor_summary.json
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas   1516240 Dec  1 05:20 agis_ddmendpoints.agis.ALL.json
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas   3084611 Dec  1 05:20 log.47556161._006119.job.log.tgz.1
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas        95 Dec  1 05:21 pilot_heartbeat.json
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas      8618 Dec  1 05:21 heartbeat.json
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas      6663 Dec  1 05:22 init_data.xml
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas        30 Dec  1 05:22 wrapper_checkpoint.txt
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas      8192 Dec  1 05:22 boinc_mmap_file
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas      4939 Dec  1 05:22 pilotlog.txt
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas  18204474 Dec  1 05:22 log.47556161._006119.job.log.1
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas       353 Dec  1 05:22 output.list
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas       620 Dec  1 05:22 runtime_log
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas  21309440 Dec  1 05:22 result.tar.gz
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas      9344 Dec  1 05:22 runtime_log.err
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas       663 Dec  1 05:22 bs5KDmzfXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmV4JKDmUwHTBn.diag
[2025-12-01 05:22:18] -rw-r--r--. 1 boincer umatlas     21629 Dec  1 05:22 stderr.txt
[2025-12-01 05:22:18] HITS file was successfully produced:
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas 909710973 Dec  1 05:19 shared/HITS.pool.root.1
[2025-12-01 05:22:18]  *** Contents of shared directory: ***
[2025-12-01 05:22:18] total 1308448
[2025-12-01 05:22:18] -rw-r--r--. 2 boincer umatlas 408203546 Nov 29 15:32 ATLAS.root_0
[2025-12-01 05:22:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 15:32 start_atlas.sh
[2025-12-01 05:22:18] -rw-r--r--. 2 boincer umatlas    590106 Nov 29 15:32 input.tar.gz
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas 909710973 Dec  1 05:19 HITS.pool.root.1
[2025-12-01 05:22:18] -rw-------. 1 boincer umatlas  21309440 Dec  1 05:22 result.tar.gz
05:22:20 (722736): run_atlas exited; CPU time 317441.020062
05:22:20 (722736): called boinc_finish(0)

</stderr_txt>
]]>

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