Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:49 (918981): wrapper (7.7.26015): starting
00:01:49 (918981): wrapper: running run_atlas (--nthreads 9)
[2025-11-30 00:01:49] Arguments: --nthreads 9
[2025-11-30 00:01:49] Threads: 9
[2025-11-30 00:01:49] Checking for CVMFS
[2025-11-30 00:01:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 00:01:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 00:01:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 00:01:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 00:01:50] 2.13.2.0 5689 38224 247588 153468 2 81 31647835 39288832 8407 16776704 0 67037786 99.592 87389171 32392 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-30 00:01:50] CVMFS is ok
[2025-11-30 00:01:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-30 00:01:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-30 00:01:50] Further information can be found at the LHC@home message board.
[2025-11-30 00:01:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 00:01:50] Checking for apptainer binary...
[2025-11-30 00:01:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 00:01:50] Running /usr/bin/apptainer --version
[2025-11-30 00:01:50] apptainer version 1.4.4-1.el9
[2025-11-30 00:01:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 00:01:50] c-210-11.aglt2.org
[2025-11-30 00:01:50] apptainer works
[2025-11-30 00:01:50] Set ATHENA_PROC_NUMBER=9
[2025-11-30 00:01:50] Set ATHENA_CORE_NUMBER=9
[2025-11-30 00:01:50] Starting ATLAS job with PandaID=6897531722
[2025-11-30 00:01:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:13:12 (4026934): wrapper (7.7.26015): starting
05:13:12 (4026934): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 05:13:12] Arguments: --nthreads 12
[2025-12-01 05:13:12] Threads: 12
[2025-12-01 05:13:12] This job has been restarted, cleaning up previous attempt
[2025-12-01 05:13:13] Checking for CVMFS
[2025-12-01 05:13:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 05:13:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 05:13:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 05:13:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 05:13:16] 2.13.2.0 5689 39975 254184 153512 2 347 21311382 39288833 9598 16776704 0 70392036 99.598 89594157 32345 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 05:13:16] CVMFS is ok
[2025-12-01 05:13:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 05:13:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 05:13:16] Further information can be found at the LHC@home message board.
[2025-12-01 05:13:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 05:13:16] Checking for apptainer binary...
[2025-12-01 05:13:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 05:13:16] Running /usr/bin/apptainer --version
[2025-12-01 05:13:18] apptainer version 1.4.4-1.el9
[2025-12-01 05:13:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 05:13:20] c-210-11.aglt2.org
[2025-12-01 05:13:20] apptainer works
[2025-12-01 05:13:20] Set ATHENA_PROC_NUMBER=12
[2025-12-01 05:13:20] Set ATHENA_CORE_NUMBER=12
[2025-12-01 05:13:20] Starting ATLAS job with PandaID=6897531722
[2025-12-01 05:13:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 20:01:55]  *** The last 200 lines of the pilot log: ***
[2025-12-02 20:01:55] 2025-12-03 01:00:59,057 | INFO     | log transfer has been attempted: DONE
[2025-12-02 20:01:55] 2025-12-03 01:00:59,057 | INFO     | job 6897531722 has finished - writing final server update
[2025-12-02 20:01:55] 2025-12-03 01:00:59,058 | INFO     | total number of processed events: 1000 (read)
[2025-12-02 20:01:55] 2025-12-03 01:00:59,060 | INFO     | executing command: lscpu
[2025-12-02 20:01:55] 2025-12-03 01:00:59,119 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-02 20:01:55] 2025-12-03 01:00:59,136 | INFO     | monitor loop #8030: job 0:6897531722 is in state 'finished'
[2025-12-02 20:01:55] 2025-12-03 01:00:59,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:01:55] 2025-12-03 01:01:00,894 | INFO     | time since job start (139598s) is within the limit (172800.0s)
[2025-12-02 20:01:55] 2025-12-03 01:01:01,642 | INFO     | monitor loop #8031: job 0:6897531722 is in state 'finished'
[2025-12-02 20:01:55] 2025-12-03 01:01:01,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:01:55] 2025-12-03 01:01:02,901 | INFO     | time since job start (139600s) is within the limit (172800.0s)
[2025-12-02 20:01:55] 2025-12-03 01:01:04,147 | INFO     | monitor loop #8032: job 0:6897531722 is in state 'finished'
[2025-12-02 20:01:55] 2025-12-03 01:01:04,147 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:01:55] 2025-12-03 01:01:04,917 | INFO     | time since job start (139602s) is within the limit (172800.0s)
[2025-12-02 20:01:55] 2025-12-03 01:01:06,651 | INFO     | monitor loop #8033: job 0:6897531722 is in state 'finished'
[2025-12-02 20:01:55] 2025-12-03 01:01:06,651 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 20:01:55] 2025-12-03 01:01:06,925 | INFO     | time since job start (139604s) is within the limit (172800.0s)
[2025-12-02 20:01:55] 2025-12-03 01:01:07,573 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 20:01:55] 2025-12-03 01:01:07,613 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8015
[2025-12-02 20:01:55] 2025-12-03 01:01:07,654 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897531722/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 20:01:55] 2025-12-03 01:01:07,655 | INFO     | extracted standard info from prmon json
[2025-12-02 20:01:55] 2025-12-03 01:01:07,655 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 20:01:55] 2025-12-03 01:01:07,655 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 20:01:55] 2025-12-03 01:01:07,714 | INFO     | fitting pss+swap vs Time
[2025-12-02 20:01:55] 2025-12-03 01:01:07,718 | INFO     | sum of square deviations: 3703998992199.4136
[2025-12-02 20:01:55] 2025-12-03 01:01:07,838 | INFO     | sum of deviations: 18304481898525.34
[2025-12-02 20:01:55] 2025-12-03 01:01:07,838 | INFO     | mean x: 1764653913.9505687
[2025-12-02 20:01:55] 2025-12-03 01:01:07,838 | INFO     | mean y: 3607848.144794401
[2025-12-02 20:01:55] 2025-12-03 01:01:07,839 | INFO     | intersect: -8716987295.940243
[2025-12-02 20:01:55] 2025-12-03 01:01:07,842 | INFO     | chi2: 17.66184681651415
[2025-12-02 20:01:55] 2025-12-03 01:01:07,845 | INFO     | sum of square deviations: 3679750829613.7534
[2025-12-02 20:01:55] 2025-12-03 01:01:07,983 | INFO     | sum of deviations: 19252706578216.09
[2025-12-02 20:01:55] 2025-12-03 01:01:07,984 | INFO     | mean x: 1764653761.4669006
[2025-12-02 20:01:55] 2025-12-03 01:01:07,984 | INFO     | mean y: 3613811.1144234985
[2025-12-02 20:01:55] 2025-12-03 01:01:07,984 | INFO     | intersect: -9229174672.347565
[2025-12-02 20:01:55] 2025-12-03 01:01:07,987 | INFO     | chi2: 14.547373513591786
[2025-12-02 20:01:55] 2025-12-03 01:01:07,987 | INFO     | current chi2=14.547373513591786 (change=17.63390507956548 %)
[2025-12-02 20:01:55] 2025-12-03 01:01:07,987 | INFO     | right removable region: 2280
[2025-12-02 20:01:55] 2025-12-03 01:01:07,991 | INFO     | sum of square deviations: 3679740579309.6763
[2025-12-02 20:01:55] 2025-12-03 01:01:08,131 | INFO     | sum of deviations: 17174046613879.854
[2025-12-02 20:01:55] 2025-12-03 01:01:08,131 | INFO     | mean x: 1764654066.4664621
[2025-12-02 20:01:55] 2025-12-03 01:01:08,131 | INFO     | mean y: 3614954.5922840857
[2025-12-02 20:01:55] 2025-12-03 01:01:08,131 | INFO     | intersect: -8232359984.856611
[2025-12-02 20:01:55] 2025-12-03 01:01:08,134 | INFO     | chi2: 13.700658702510413
[2025-12-02 20:01:55] 2025-12-03 01:01:08,135 | INFO     | current chi2=13.700658702510413 (change=22.427938341645863 %)
[2025-12-02 20:01:55] 2025-12-03 01:01:08,135 | INFO     | left removable region: 10
[2025-12-02 20:01:55] 2025-12-03 01:01:08,138 | INFO     | sum of square deviations: 3626757359031.9844
[2025-12-02 20:01:55] 2025-12-03 01:01:08,272 | INFO     | sum of deviations: 17461114322729.402
[2025-12-02 20:01:55] 2025-12-03 01:01:08,272 | INFO     | mean x: 1764654036.002643
[2025-12-02 20:01:55] 2025-12-03 01:01:08,273 | INFO     | mean y: 3627942.264757709
[2025-12-02 20:01:55] 2025-12-03 01:01:08,273 | INFO     | intersect: -8492343200.103649
[2025-12-02 20:01:55] 2025-12-03 01:01:08,276 | INFO     | chi2: 7.473996197110128
[2025-12-02 20:01:55] 2025-12-03 01:01:08,276 | INFO     | current memory leak: 4.81 B/s (using 2270 data points, chi2=7.47)
[2025-12-02 20:01:55] 2025-12-03 01:01:08,279 | INFO     | could have reported an average CPU frequency of 2599 MHz (79 samples)
[2025-12-02 20:01:55] 2025-12-03 01:01:08,279 | INFO     | ..............................
[2025-12-02 20:01:55] 2025-12-03 01:01:08,279 | INFO     | . Timing measurements:
[2025-12-02 20:01:55] 2025-12-03 01:01:08,279 | INFO     | . get job = 0 s
[2025-12-02 20:01:55] 2025-12-03 01:01:08,279 | INFO     | . initial setup = 5 s
[2025-12-02 20:01:55] 2025-12-03 01:01:08,279 | INFO     | . payload setup = 43 s
[2025-12-02 20:01:55] 2025-12-03 01:01:08,280 | INFO     | . stage-in = 0 s
[2025-12-02 20:01:55] 2025-12-03 01:01:08,280 | INFO     | . payload execution = 139478 s
[2025-12-02 20:01:55] 2025-12-03 01:01:08,280 | INFO     | . stage-out = 5 s
[2025-12-02 20:01:55] 2025-12-03 01:01:08,280 | INFO     | . log creation = 1 s
[2025-12-02 20:01:55] 2025-12-03 01:01:08,280 | INFO     | ..............................
[2025-12-02 20:01:55] 2025-12-03 01:01:08,507 | INFO     | 
[2025-12-02 20:01:55] 2025-12-03 01:01:08,507 | INFO     | job summary report
[2025-12-02 20:01:55] 2025-12-03 01:01:08,507 | INFO     | --------------------------------------------------
[2025-12-02 20:01:55] 2025-12-03 01:01:08,507 | INFO     | PanDA job id: 6897531722
[2025-12-02 20:01:55] 2025-12-03 01:01:08,507 | INFO     | task id: 47556161
[2025-12-02 20:01:55] 2025-12-03 01:01:08,507 | INFO     | errors: (none)
[2025-12-02 20:01:55] 2025-12-03 01:01:08,507 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 20:01:55] 2025-12-03 01:01:08,508 | INFO     | pilot state: finished 
[2025-12-02 20:01:55] 2025-12-03 01:01:08,508 | INFO     | transexitcode: 0
[2025-12-02 20:01:55] 2025-12-03 01:01:08,508 | INFO     | exeerrorcode: 0
[2025-12-02 20:01:55] 2025-12-03 01:01:08,508 | INFO     | exeerrordiag: 
[2025-12-02 20:01:55] 2025-12-03 01:01:08,508 | INFO     | exitcode: 0
[2025-12-02 20:01:55] 2025-12-03 01:01:08,508 | INFO     | exitmsg: OK
[2025-12-02 20:01:55] 2025-12-03 01:01:08,508 | INFO     | cpuconsumptiontime: 312763 s
[2025-12-02 20:01:55] 2025-12-03 01:01:08,508 | INFO     | nevents: 1000
[2025-12-02 20:01:55] 2025-12-03 01:01:08,508 | INFO     | neventsw: 0
[2025-12-02 20:01:55] 2025-12-03 01:01:08,509 | INFO     | pid: 4047827
[2025-12-02 20:01:55] 2025-12-03 01:01:08,509 | INFO     | pgrp: 4047827
[2025-12-02 20:01:55] 2025-12-03 01:01:08,509 | INFO     | corecount: 12
[2025-12-02 20:01:55] 2025-12-03 01:01:08,509 | INFO     | event service: False
[2025-12-02 20:01:55] 2025-12-03 01:01:08,509 | INFO     | sizes: {0: 2283437, 1: 2284038, 2: 2284150, 3: 2284349, 4: 2284349, 15: 2284377, 26: 2284533, 30: 2284823, 37: 2284851, 139524: 2373739, 139529: 2382733, 139531: 2
[2025-12-02 20:01:55] 2025-12-03 01:01:08,509 | INFO     | --------------------------------------------------
[2025-12-02 20:01:55] 2025-12-03 01:01:08,509 | INFO     | 
[2025-12-02 20:01:55] 2025-12-03 01:01:08,509 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-02 20:01:55] 2025-12-03 01:01:08,532 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,533 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,533 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,533 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,533 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,533 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,533 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,534 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,534 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,534 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,534 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,534 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,534 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,534 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,534 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,534 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,535 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,535 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 20:01:55] 2025-12-03 01:01:08,535 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,535 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 20:01:55] 2025-12-03 01:01:08,535 | INFO     | job 6897531722 has completed (purged errors)
[2025-12-02 20:01:55] 2025-12-03 01:01:08,535 | INFO     | overall cleanup function is called
[2025-12-02 20:01:55] 2025-12-03 01:01:09,557 | INFO     | --- collectZombieJob: --- 10, [4047827]
[2025-12-02 20:01:55] 2025-12-03 01:01:09,557 | INFO     | zombie collector waiting for pid 4047827
[2025-12-02 20:01:55] 2025-12-03 01:01:09,557 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 20:01:55] 2025-12-03 01:01:09,557 | INFO     | collected zombie processes
[2025-12-02 20:01:55] 2025-12-03 01:01:09,557 | INFO     | will attempt to kill all subprocesses of pid=4047827
[2025-12-02 20:01:55] 2025-12-03 01:01:09,908 | INFO     | process IDs to be killed: [4047827] (in reverse order)
[2025-12-02 20:01:55] 2025-12-03 01:01:09,999 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 20:01:55] 2025-12-03 01:01:09,999 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 20:01:55] 2025-12-03 01:01:10,008 | INFO     | did not find any defunct processes belonging to 4047827
[2025-12-02 20:01:55] 2025-12-03 01:01:10,018 | INFO     | did not find any defunct processes belonging to 4047827
[2025-12-02 20:01:55] 2025-12-03 01:01:10,020 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 20:01:55] 2025-12-03 01:01:10,020 | INFO     | ready for new job
[2025-12-02 20:01:55] 2025-12-03 01:01:10,020 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 20:01:55] 2025-12-03 01:01:10,027 | INFO     | ***************************************
[2025-12-02 20:01:55] 2025-12-03 01:01:10,027 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 20:01:55] 2025-12-03 01:01:10,027 | INFO     | ***************************************
[2025-12-02 20:01:55] 2025-12-03 01:01:10,028 | INFO     | 
[2025-12-02 20:01:55] 2025-12-03 01:01:10,030 | INFO     | architecture information:
[2025-12-02 20:01:55] 2025-12-03 01:01:10,030 | INFO     | executing command: cat /etc/os-release
[2025-12-02 20:01:55] 2025-12-03 01:01:10,048 | INFO     | cat /etc/os-release:
[2025-12-02 20:01:55] NAME="CentOS Linux"
[2025-12-02 20:01:55] VERSION="7 (Core)"
[2025-12-02 20:01:55] ID="centos"
[2025-12-02 20:01:55] ID_LIKE="rhel fedora"
[2025-12-02 20:01:55] VERSION_ID="7"
[2025-12-02 20:01:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 20:01:55] ANSI_COLOR="0;31"
[2025-12-02 20:01:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 20:01:55] HOME_URL="https://www.centos.org/"
[2025-12-02 20:01:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 20:01:55] 
[2025-12-02 20:01:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 20:01:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 20:01:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 20:01:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 20:01:55] 
[2025-12-02 20:01:55] 2025-12-03 01:01:10,048 | INFO     | ***************************************
[2025-12-02 20:01:55] 2025-12-03 01:01:10,551 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-02 20:01:55] 2025-12-03 01:01:10,669 | INFO     | sufficient remaining disk space (49313480704 B)
[2025-12-02 20:01:55] 2025-12-03 01:01:10,670 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 20:01:55] 2025-12-03 01:01:10,670 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 20:01:55] 2025-12-03 01:01:10,670 | INFO     | update_server=False
[2025-12-02 20:01:55] 2025-12-03 01:01:10,670 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 20:01:55] 2025-12-03 01:01:10,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:01:55] 2025-12-03 01:01:10,671 | INFO     | aborting loop
[2025-12-02 20:01:55] 2025-12-03 01:01:10,774 | INFO     | all data control threads have been joined
[2025-12-02 20:01:55] 2025-12-03 01:01:11,327 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 20:01:55] 2025-12-03 01:01:11,391 | INFO     | all job control threads have been joined
[2025-12-02 20:01:55] 2025-12-03 01:01:11,601 | INFO     | all payload control threads have been joined
[2025-12-02 20:01:55] 2025-12-03 01:01:11,676 | INFO     | [job] retrieve thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:11,676 | INFO     | [job] job monitor thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:11,780 | INFO     | [data] control thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:11,948 | INFO     | [payload] validate_post thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:12,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 20:01:55] 2025-12-03 01:01:12,025 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:12,028 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:12,164 | INFO     | [payload] failed_post thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:12,223 | INFO     | [job] validate thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:12,397 | INFO     | [job] control thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:12,607 | INFO     | [payload] control thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:12,740 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:13,026 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:13,160 | INFO     | [data] copytool_in thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:13,334 | INFO     | [data] copytool_out thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:13,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 20:01:55] 2025-12-03 01:01:14,420 | INFO     | [job] queue monitor thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:16,008 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 20:01:55] 2025-12-03 01:01:40,340 | INFO     | PID=4034365 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 20:01:55] 2025-12-03 01:01:40,341 | INFO     | .. there are 12 such processes running
[2025-12-02 20:01:55] 2025-12-03 01:01:40,341 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 20:01:55] 2025-12-03 01:01:40,341 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 20:01:55] 2025-12-03 01:01:40,341 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 20:01:55] 2025-12-03 01:01:49,099 | INFO     | [monitor] cgroup control has ended
[2025-12-02 20:01:55] 2025-12-03 01:01:50,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140101711378240)>', '<ExcThread(monitor, started 140100608448256)>']
[2025-12-02 20:01:55] 2025-12-03 01:01:50,409 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 20:01:55] 2025-12-03 01:01:50,409 | INFO     | [monitor] control thread has ended
[2025-12-02 20:01:55] 2025-12-03 01:01:55,359 | INFO     | all workflow threads have been joined
[2025-12-02 20:01:55] 2025-12-03 01:01:55,359 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 20:01:55] 2025-12-03 01:01:55,359 | INFO     | traces error code: 0
[2025-12-02 20:01:55] 2025-12-03 01:01:55,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 20:01:55] 2025-12-03 01:01:55,528 [wrapper] ==== pilot stdout END ====
[2025-12-02 20:01:55] 2025-12-03 01:01:55,531 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 20:01:55] 2025-12-03 01:01:55,534 [wrapper] pilotpid: 4034365
[2025-12-02 20:01:55] 2025-12-03 01:01:55,537 [wrapper] Pilot exit status: 0
[2025-12-02 20:01:55] 2025-12-03 01:01:55,554 [wrapper] pandaids: 6897531722 6897531722
[2025-12-02 20:01:55] 2025-12-03 01:01:55,610 [wrapper] cleanup supervisor_pilot 3733280 4034366
[2025-12-02 20:01:55] 2025-12-03 01:01:55,614 [wrapper] Test setup, not cleaning
[2025-12-02 20:01:55] 2025-12-03 01:01:55,617 [wrapper] apfmon messages muted
[2025-12-02 20:01:55] 2025-12-03 01:01:55,621 [wrapper] ==== wrapper stdout END ====
[2025-12-02 20:01:55] 2025-12-03 01:01:55,624 [wrapper] ==== wrapper stderr END ====
[2025-12-02 20:01:55]  *** Error codes and diagnostics ***
[2025-12-02 20:01:55]     "exeErrorCode": 0,
[2025-12-02 20:01:55]     "exeErrorDiag": "",
[2025-12-02 20:01:55]     "pilotErrorCode": 0,
[2025-12-02 20:01:55]     "pilotErrorDiag": "",
[2025-12-02 20:01:55]  *** Listing of results directory ***
[2025-12-02 20:01:55] total 1762556
[2025-12-02 20:01:55] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-12-02 20:01:55] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas       100 Nov 30 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 20:01:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 30 00:01 run_atlas
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas       105 Nov 30 00:01 job.xml
[2025-12-02 20:01:55] -rw-r--r--. 3 boincer umatlas 411787625 Nov 30 00:01 EVNT.47483658._002308.pool.root.1
[2025-12-02 20:01:55] -rw-r--r--. 3 boincer umatlas 411787625 Nov 30 00:01 ATLAS.root_0
[2025-12-02 20:01:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 00:01 start_atlas.sh
[2025-12-02 20:01:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 30 00:01 shared
[2025-12-02 20:01:55] -rw-r--r--. 2 boincer umatlas    590109 Nov 30 00:01 input.tar.gz
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas         0 Nov 30 00:01 boinc_lockfile
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas      2786 Dec  1 05:13 pandaJob.out
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas        57 Dec  1 05:13 setup.sh.local
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas    992532 Dec  1 05:14 agis_schedconf.cvmfs.json
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas       534 Dec  2 19:22 boinc_task_state.xml
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas      6664 Dec  2 19:54 init_data.xml
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas 936163896 Dec  2 20:00 HITS.47556161._002917.pool.root.1
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas      1073 Dec  2 20:00 memory_monitor_summary.json
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas   1516240 Dec  2 20:00 agis_ddmendpoints.agis.ALL.json
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas   3473093 Dec  2 20:00 log.47556161._002917.job.log.tgz.1
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas        96 Dec  2 20:01 pilot_heartbeat.json
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas      8662 Dec  2 20:01 heartbeat.json
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 20:01 boinc_mmap_file
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas        30 Dec  2 20:01 wrapper_checkpoint.txt
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas      4824 Dec  2 20:01 pilotlog.txt
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas  17117771 Dec  2 20:01 log.47556161._002917.job.log.1
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas       353 Dec  2 20:01 output.list
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas       620 Dec  2 20:01 runtime_log
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas  20613120 Dec  2 20:01 result.tar.gz
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas      9431 Dec  2 20:01 runtime_log.err
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas       793 Dec  2 20:01 nsULDmKbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAcMKDm3Ti9qn.diag
[2025-12-02 20:01:55] -rw-r--r--. 1 boincer umatlas     23984 Dec  2 20:01 stderr.txt
[2025-12-02 20:01:55] HITS file was successfully produced:
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas 936163896 Dec  2 20:00 shared/HITS.pool.root.1
[2025-12-02 20:01:55]  *** Contents of shared directory: ***
[2025-12-02 20:01:55] total 1337100
[2025-12-02 20:01:55] -rw-r--r--. 3 boincer umatlas 411787625 Nov 30 00:01 ATLAS.root_0
[2025-12-02 20:01:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 30 00:01 start_atlas.sh
[2025-12-02 20:01:55] -rw-r--r--. 2 boincer umatlas    590109 Nov 30 00:01 input.tar.gz
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas 936163896 Dec  2 20:00 HITS.pool.root.1
[2025-12-02 20:01:55] -rw-------. 1 boincer umatlas  20613120 Dec  2 20:01 result.tar.gz
20:01:57 (4026934): run_atlas exited; CPU time 314340.909563
20:01:57 (4026934): called boinc_finish(0)

</stderr_txt>
]]>

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