Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:59 (2349459): wrapper (7.7.26015): starting
00:02:59 (2349459): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 00:02:59] Arguments: --nthreads 8
[2025-11-29 00:02:59] Threads: 8
[2025-11-29 00:02:59] Checking for CVMFS
[2025-11-29 00:03:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 00:03:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 00:03:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 00:03:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 00:03:03] 2.13.3.0 7100 33861 279532 153430 2 725 22735415 40960001 49258 16776704 0 459725023 99.712 319676609 48806 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 00:03:03] CVMFS is ok
[2025-11-29 00:03:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 00:03:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 00:03:03] Further information can be found at the LHC@home message board.
[2025-11-29 00:03:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 00:03:03] Checking for apptainer binary...
[2025-11-29 00:03:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 00:03:03] Running /usr/bin/apptainer --version
[2025-11-29 00:03:03] apptainer version 1.4.4-1.el9
[2025-11-29 00:03:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 00:03:04] c8-6-10.aglt2.org
[2025-11-29 00:03:04] apptainer works
[2025-11-29 00:03:04] Set ATHENA_PROC_NUMBER=8
[2025-11-29 00:03:04] Set ATHENA_CORE_NUMBER=8
[2025-11-29 00:03:04] Starting ATLAS job with PandaID=6895352894
[2025-11-29 00:03:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 21:45:48]  *** The last 200 lines of the pilot log: ***
[2025-11-29 21:45:48] 2025-11-30 02:44:33,804 | INFO     | monitor loop #3666: job 0:6895352894 is in state 'finished'
[2025-11-29 21:45:48] 2025-11-30 02:44:33,804 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 21:45:48] 2025-11-30 02:44:36,332 | INFO     | monitor loop #3667: job 0:6895352894 is in state 'finished'
[2025-11-29 21:45:48] 2025-11-30 02:44:36,332 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 21:45:48] 2025-11-30 02:44:37,044 | INFO     | PID=2406046 has CPU usage=14.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-29 21:45:48] 2025-11-30 02:44:37,044 | INFO     | .. there are 94 such processes running
[2025-11-29 21:45:48] 2025-11-30 02:44:38,045 | INFO     | time since job start (77967s) is within the limit (172800.0s)
[2025-11-29 21:45:48] 2025-11-30 02:44:38,837 | INFO     | monitor loop #3668: job 0:6895352894 is in state 'finished'
[2025-11-29 21:45:48] 2025-11-30 02:44:38,837 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 21:45:48] 2025-11-30 02:44:40,085 | INFO     | time since job start (77969s) is within the limit (172800.0s)
[2025-11-29 21:45:48] 2025-11-30 02:44:41,343 | INFO     | monitor loop #3669: job 0:6895352894 is in state 'finished'
[2025-11-29 21:45:48] 2025-11-30 02:44:41,343 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 21:45:48] 2025-11-30 02:44:42,106 | INFO     | time since job start (77971s) is within the limit (172800.0s)
[2025-11-29 21:45:48] 2025-11-30 02:44:43,848 | INFO     | monitor loop #3670: job 0:6895352894 is in state 'finished'
[2025-11-29 21:45:48] 2025-11-30 02:44:43,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 21:45:48] 2025-11-30 02:44:44,117 | INFO     | time since job start (77973s) is within the limit (172800.0s)
[2025-11-29 21:45:48] 2025-11-30 02:44:45,848 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-29 21:45:48] 2025-11-30 02:44:45,856 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.983484374999
[2025-11-29 21:45:48] 2025-11-30 02:44:45,889 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6895352894/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 21:45:48] 2025-11-30 02:44:45,889 | INFO     | extracted standard info from prmon json
[2025-11-29 21:45:48] 2025-11-30 02:44:45,889 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 21:45:48] 2025-11-30 02:44:45,889 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 21:45:48] 2025-11-30 02:44:45,907 | INFO     | fitting pss+swap vs Time
[2025-11-29 21:45:48] 2025-11-30 02:44:45,908 | INFO     | sum of square deviations: 641145339376.96
[2025-11-29 21:45:48] 2025-11-30 02:44:45,952 | INFO     | sum of deviations: 3735729827996.3403
[2025-11-29 21:45:48] 2025-11-30 02:44:45,952 | INFO     | mean x: 1764431811.7087913
[2025-11-29 21:45:48] 2025-11-30 02:44:45,952 | INFO     | mean y: 2836213.416012559
[2025-11-29 21:45:48] 2025-11-30 02:44:45,952 | INFO     | intersect: -10277891327.817398
[2025-11-29 21:45:48] 2025-11-30 02:44:45,953 | INFO     | chi2: 23.282545227205375
[2025-11-29 21:45:48] 2025-11-30 02:44:45,954 | INFO     | sum of square deviations: 633626456629.9716
[2025-11-29 21:45:48] 2025-11-30 02:44:45,991 | INFO     | sum of deviations: 4185220992012.459
[2025-11-29 21:45:48] 2025-11-30 02:44:45,992 | INFO     | mean x: 1764431659.217494
[2025-11-29 21:45:48] 2025-11-30 02:44:45,992 | INFO     | mean y: 2845329.53821907
[2025-11-29 21:45:48] 2025-11-30 02:44:45,992 | INFO     | intersect: -11651555053.93707
[2025-11-29 21:45:48] 2025-11-30 02:44:45,992 | INFO     | chi2: 19.748141710769925
[2025-11-29 21:45:48] 2025-11-30 02:44:45,992 | INFO     | current chi2=19.748141710769925 (change=15.18048599044722 %)
[2025-11-29 21:45:48] 2025-11-30 02:44:45,993 | INFO     | right removable region: 1268
[2025-11-29 21:45:48] 2025-11-30 02:44:45,997 | INFO     | sum of square deviations: 633624740089.9716
[2025-11-29 21:45:48] 2025-11-30 02:44:46,030 | INFO     | sum of deviations: 3208105441819.2827
[2025-11-29 21:45:48] 2025-11-30 02:44:46,030 | INFO     | mean x: 1764431964.217494
[2025-11-29 21:45:48] 2025-11-30 02:44:46,030 | INFO     | mean y: 2846912.158392435
[2025-11-29 21:45:48] 2025-11-30 02:44:46,030 | INFO     | intersect: -8930648622.315638
[2025-11-29 21:45:48] 2025-11-30 02:44:46,031 | INFO     | chi2: 18.557117211668864
[2025-11-29 21:45:48] 2025-11-30 02:44:46,031 | INFO     | current chi2=18.557117211668864 (change=20.29601132274364 %)
[2025-11-29 21:45:48] 2025-11-30 02:44:46,031 | INFO     | left removable region: 10
[2025-11-29 21:45:48] 2025-11-30 02:44:46,036 | INFO     | sum of square deviations: 617288996860.3826
[2025-11-29 21:45:48] 2025-11-30 02:44:46,069 | INFO     | sum of deviations: 3297452072820.582
[2025-11-29 21:45:48] 2025-11-30 02:44:46,069 | INFO     | mean x: 1764431933.736089
[2025-11-29 21:45:48] 2025-11-30 02:44:46,069 | INFO     | mean y: 2867483.004769475
[2025-11-29 21:45:48] 2025-11-30 02:44:46,070 | INFO     | intersect: -9422425640.379429
[2025-11-29 21:45:48] 2025-11-30 02:44:46,070 | INFO     | chi2: 10.751610317815343
[2025-11-29 21:45:48] 2025-11-30 02:44:46,070 | INFO     | current memory leak: 5.34 B/s (using 1258 data points, chi2=10.75)
[2025-11-29 21:45:48] 2025-11-30 02:44:46,071 | INFO     | could have reported an average CPU frequency of 3798 MHz (45 samples)
[2025-11-29 21:45:48] 2025-11-30 02:44:46,071 | INFO     | ..............................
[2025-11-29 21:45:48] 2025-11-30 02:44:46,071 | INFO     | . Timing measurements:
[2025-11-29 21:45:48] 2025-11-30 02:44:46,071 | INFO     | . get job = 0 s
[2025-11-29 21:45:48] 2025-11-30 02:44:46,072 | INFO     | . initial setup = 5 s
[2025-11-29 21:45:48] 2025-11-30 02:44:46,072 | INFO     | . payload setup = 93 s
[2025-11-29 21:45:48] 2025-11-30 02:44:46,072 | INFO     | . stage-in = 0 s
[2025-11-29 21:45:48] 2025-11-30 02:44:46,072 | INFO     | . payload execution = 77738 s
[2025-11-29 21:45:48] 2025-11-30 02:44:46,076 | INFO     | . stage-out = 7 s
[2025-11-29 21:45:48] 2025-11-30 02:44:46,076 | INFO     | . log creation = 1 s
[2025-11-29 21:45:48] 2025-11-30 02:44:46,076 | INFO     | ..............................
[2025-11-29 21:45:48] 2025-11-30 02:44:46,130 | INFO     | time since job start (77975s) is within the limit (172800.0s)
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | 
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | job summary report
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | --------------------------------------------------
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | PanDA job id: 6895352894
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | task id: 47556149
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | errors: (none)
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | pilot state: finished 
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | transexitcode: 0
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | exeerrorcode: 0
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | exeerrordiag: 
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | exitcode: 0
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | exitmsg: OK
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | cpuconsumptiontime: 135444 s
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | nevents: 1000
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | neventsw: 0
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | pid: 2486809
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | pgrp: 2486809
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | corecount: 8
[2025-11-29 21:45:48] 2025-11-30 02:44:46,174 | INFO     | event service: False
[2025-11-29 21:45:48] 2025-11-30 02:44:46,175 | INFO     | sizes: {0: 2283987, 1: 2284242, 12: 2284242, 23: 2284270, 34: 2284298, 45: 2284326, 55: 2284744, 56: 2284772, 77836: 2343635, 77844: 2352687, 77863: 2352877}
[2025-11-29 21:45:48] 2025-11-30 02:44:46,175 | INFO     | --------------------------------------------------
[2025-11-29 21:45:48] 2025-11-30 02:44:46,175 | INFO     | 
[2025-11-29 21:45:48] 2025-11-30 02:44:46,175 | INFO     | executing command: ls -lF /tmp/boinchome/slots/15
[2025-11-29 21:45:48] 2025-11-30 02:44:46,210 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,210 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,210 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | job 6895352894 has completed (purged errors)
[2025-11-29 21:45:48] 2025-11-30 02:44:46,211 | INFO     | overall cleanup function is called
[2025-11-29 21:45:48] 2025-11-30 02:44:47,226 | INFO     | --- collectZombieJob: --- 10, [2486809]
[2025-11-29 21:45:48] 2025-11-30 02:44:47,226 | INFO     | zombie collector waiting for pid 2486809
[2025-11-29 21:45:48] 2025-11-30 02:44:47,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 21:45:48] 2025-11-30 02:44:47,226 | INFO     | collected zombie processes
[2025-11-29 21:45:48] 2025-11-30 02:44:47,226 | INFO     | will attempt to kill all subprocesses of pid=2486809
[2025-11-29 21:45:48] 2025-11-30 02:44:48,775 | INFO     | process IDs to be killed: [2486809] (in reverse order)
[2025-11-29 21:45:48] 2025-11-30 02:44:48,994 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 21:45:48] 2025-11-30 02:44:48,995 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 21:45:48] 2025-11-30 02:44:49,046 | INFO     | did not find any defunct processes belonging to 2486809
[2025-11-29 21:45:48] 2025-11-30 02:44:49,117 | INFO     | did not find any defunct processes belonging to 2486809
[2025-11-29 21:45:48] 2025-11-30 02:44:49,131 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 21:45:48] 2025-11-30 02:44:49,131 | INFO     | ready for new job
[2025-11-29 21:45:48] 2025-11-30 02:44:49,131 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 21:45:48] 2025-11-30 02:44:49,135 | INFO     | ***************************************
[2025-11-29 21:45:48] 2025-11-30 02:44:49,135 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 21:45:48] 2025-11-30 02:44:49,135 | INFO     | ***************************************
[2025-11-29 21:45:48] 2025-11-30 02:44:49,135 | INFO     | 
[2025-11-29 21:45:48] 2025-11-30 02:44:49,148 | INFO     | architecture information:
[2025-11-29 21:45:48] 2025-11-30 02:44:49,157 | INFO     | executing command: cat /etc/os-release
[2025-11-29 21:45:48] 2025-11-30 02:44:49,183 | INFO     | cat /etc/os-release:
[2025-11-29 21:45:48] NAME="CentOS Linux"
[2025-11-29 21:45:48] VERSION="7 (Core)"
[2025-11-29 21:45:48] ID="centos"
[2025-11-29 21:45:48] ID_LIKE="rhel fedora"
[2025-11-29 21:45:48] VERSION_ID="7"
[2025-11-29 21:45:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 21:45:48] ANSI_COLOR="0;31"
[2025-11-29 21:45:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 21:45:48] HOME_URL="https://www.centos.org/"
[2025-11-29 21:45:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 21:45:48] 
[2025-11-29 21:45:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 21:45:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 21:45:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 21:45:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 21:45:48] 
[2025-11-29 21:45:48] 2025-11-30 02:44:49,183 | INFO     | ***************************************
[2025-11-29 21:45:48] 2025-11-30 02:44:49,687 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-11-29 21:45:48] 2025-11-30 02:44:49,707 | INFO     | sufficient remaining disk space (163150036992 B)
[2025-11-29 21:45:48] 2025-11-30 02:44:49,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 21:45:48] 2025-11-30 02:44:49,707 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 21:45:48] 2025-11-30 02:44:49,707 | INFO     | update_server=False
[2025-11-29 21:45:48] 2025-11-30 02:44:49,707 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 21:45:48] 2025-11-30 02:44:49,709 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 21:45:48] 2025-11-30 02:44:49,858 | INFO     | all payload control threads have been joined
[2025-11-29 21:45:48] 2025-11-30 02:44:49,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 21:45:48] 2025-11-30 02:44:49,897 | INFO     | aborting loop
[2025-11-29 21:45:48] 2025-11-30 02:44:50,606 | INFO     | all data control threads have been joined
[2025-11-29 21:45:48] 2025-11-30 02:44:50,713 | INFO     | [job] retrieve thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:50,800 | INFO     | [data] copytool_in thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:50,864 | INFO     | [payload] control thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:50,903 | INFO     | [job] job monitor thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:50,944 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:50,945 | INFO     | all job control threads have been joined
[2025-11-29 21:45:48] 2025-11-30 02:44:50,979 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:51,188 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 21:45:48] 2025-11-30 02:44:51,291 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 21:45:48] 2025-11-30 02:44:51,308 | INFO     | [payload] validate_post thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:51,518 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:51,612 | INFO     | [data] control thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:51,716 | INFO     | [data] copytool_out thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:51,951 | INFO     | [job] control thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:51,987 | INFO     | [payload] failed_post thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:52,194 | INFO     | [job] validate thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:52,207 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:52,232 | INFO     | [job] queue monitor thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:44:55,305 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 21:45:48] 2025-11-30 02:45:20,546 | INFO     | PID=2406046 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 21:45:48] 2025-11-30 02:45:20,546 | INFO     | .. there are 94 such processes running
[2025-11-29 21:45:48] 2025-11-30 02:45:20,546 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 21:45:48] 2025-11-30 02:45:20,546 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 21:45:48] 2025-11-30 02:45:20,546 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 21:45:48] 2025-11-30 02:45:40,902 | INFO     | [monitor] cgroup control has ended
[2025-11-29 21:45:48] 2025-11-30 02:45:42,483 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140641475819328)>', '<ExcThread(monitor, started 140640834803456)>']
[2025-11-29 21:45:48] 2025-11-30 02:45:42,713 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 21:45:48] 2025-11-30 02:45:42,713 | INFO     | [monitor] control thread has ended
[2025-11-29 21:45:48] 2025-11-30 02:45:47,508 | INFO     | all workflow threads have been joined
[2025-11-29 21:45:48] 2025-11-30 02:45:47,508 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 21:45:48] 2025-11-30 02:45:47,508 | INFO     | traces error code: 0
[2025-11-29 21:45:48] 2025-11-30 02:45:47,509 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 21:45:48] 2025-11-30 02:45:47,661 [wrapper] ==== pilot stdout END ====
[2025-11-29 21:45:48] 2025-11-30 02:45:47,669 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 21:45:48] 2025-11-30 02:45:47,685 [wrapper] pilotpid: 2406046
[2025-11-29 21:45:48] 2025-11-30 02:45:47,690 [wrapper] Pilot exit status: 0
[2025-11-29 21:45:48] 2025-11-30 02:45:47,735 [wrapper] pandaids: 6895352894
[2025-11-29 21:45:48] 2025-11-30 02:45:47,928 [wrapper] cleanup supervisor_pilot 3524511 2406047
[2025-11-29 21:45:48] 2025-11-30 02:45:47,931 [wrapper] Test setup, not cleaning
[2025-11-29 21:45:48] 2025-11-30 02:45:47,934 [wrapper] apfmon messages muted
[2025-11-29 21:45:48] 2025-11-30 02:45:47,936 [wrapper] ==== wrapper stdout END ====
[2025-11-29 21:45:48] 2025-11-30 02:45:47,939 [wrapper] ==== wrapper stderr END ====
[2025-11-29 21:45:48]  *** Error codes and diagnostics ***
[2025-11-29 21:45:48]     "exeErrorCode": 0,
[2025-11-29 21:45:48]     "exeErrorDiag": "",
[2025-11-29 21:45:48]     "pilotErrorCode": 0,
[2025-11-29 21:45:48]     "pilotErrorDiag": "",
[2025-11-29 21:45:48]  *** Listing of results directory ***
[2025-11-29 21:45:48] total 1318572
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 23:30 pilot3.tar.gz
[2025-11-29 21:45:48] -rwx------. 1 boincer umatlas     36292 Nov 22 23:31 runpilot2-wrapper.sh
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 23:31 queuedata.json
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas       100 Nov 29 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 21:45:48] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 00:02 run_atlas
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas       105 Nov 29 00:02 job.xml
[2025-11-29 21:45:48] -rw-r--r--. 2 boincer umatlas 408705724 Nov 29 00:02 EVNT.47483658._001136.pool.root.1
[2025-11-29 21:45:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 00:02 start_atlas.sh
[2025-11-29 21:45:48] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 00:02 shared
[2025-11-29 21:45:48] -rw-r--r--. 2 boincer umatlas    590104 Nov 29 00:02 input.tar.gz
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas         0 Nov 29 00:02 boinc_lockfile
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas      2784 Nov 29 00:03 pandaJob.out
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas        57 Nov 29 00:03 setup.sh.local
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas    991834 Nov 29 00:05 agis_schedconf.cvmfs.json
[2025-11-29 21:45:48] drwx------. 5 boincer umatlas      4096 Nov 29 00:05 pilot3
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas       533 Nov 29 21:26 boinc_task_state.xml
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas      7173 Nov 29 21:36 init_data.xml
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas 916023128 Nov 29 21:43 HITS.47556149._001226.pool.root.1
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas      1064 Nov 29 21:44 memory_monitor_summary.json
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas   1516240 Nov 29 21:44 agis_ddmendpoints.agis.ALL.json
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas        95 Nov 29 21:44 pilot_heartbeat.json
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas   2239501 Nov 29 21:44 log.47556149._001226.job.log.tgz.1
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas      8614 Nov 29 21:44 heartbeat.json
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas      8192 Nov 29 21:45 boinc_mmap_file
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas        29 Nov 29 21:45 wrapper_checkpoint.txt
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas      4826 Nov 29 21:45 pilotlog.txt
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas   8543610 Nov 29 21:45 log.47556149._001226.job.log.1
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas       353 Nov 29 21:45 output.list
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas       620 Nov 29 21:45 runtime_log
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas  10803200 Nov 29 21:45 result.tar.gz
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas      9356 Nov 29 21:45 runtime_log.err
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas       665 Nov 29 21:45 5AgMDmEwGh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlbKKDms7Tman.diag
[2025-11-29 21:45:48] -rw-r--r--. 1 boincer umatlas     21828 Nov 29 21:45 stderr.txt
[2025-11-29 21:45:48] HITS file was successfully produced:
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas 916023128 Nov 29 21:43 shared/HITS.pool.root.1
[2025-11-29 21:45:48]  *** Contents of shared directory: ***
[2025-11-29 21:45:48] total 1304840
[2025-11-29 21:45:48] -rw-r--r--. 2 boincer umatlas 408705724 Nov 29 00:02 ATLAS.root_0
[2025-11-29 21:45:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 00:02 start_atlas.sh
[2025-11-29 21:45:48] -rw-r--r--. 2 boincer umatlas    590104 Nov 29 00:02 input.tar.gz
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas 916023128 Nov 29 21:43 HITS.pool.root.1
[2025-11-29 21:45:48] -rw-------. 1 boincer umatlas  10803200 Nov 29 21:45 result.tar.gz
21:45:50 (2349459): run_atlas exited; CPU time 137370.995168
21:45:50 (2349459): called boinc_finish(0)

</stderr_txt>
]]>

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