Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:51:30 (4932): wrapper (7.7.26015): starting
05:51:30 (4932): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 05:51:30] Arguments: --nthreads 8
[2025-12-01 05:51:30] Threads: 8
[2025-12-01 05:51:30] Checking for CVMFS
[2025-12-01 05:51:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 05:51:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 05:51:31] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 05:51:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 05:51:33] 2.11.2.0 18053 178918 138468 153505 0 85 15578007 25165824 2504 130560 11 59679109 99.902 28654344 2244 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 05:51:33] CVMFS is ok
[2025-12-01 05:51:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 05:51:33] Checking for apptainer binary...
[2025-12-01 05:51:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 05:51:33] Running /usr/bin/apptainer --version
[2025-12-01 05:51:33] apptainer version 1.3.2-1.el7
[2025-12-01 05:51:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 05:51:43] cg-vwn306.simple-grid.lan
[2025-12-01 05:51:43] apptainer works
[2025-12-01 05:51:43] Set ATHENA_PROC_NUMBER=8
[2025-12-01 05:51:43] Set ATHENA_CORE_NUMBER=8
[2025-12-01 05:51:43] Starting ATLAS job with PandaID=6895356426
[2025-12-01 05:51:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 05:29:49]  *** The last 200 lines of the pilot log: ***
[2025-12-02 05:29:49] 2025-12-02 04:28:54,936 | INFO     | time since job start (84821s) is within the limit (172800.0s)
[2025-12-02 05:29:49] 2025-12-02 04:28:55,542 | INFO     | monitor loop #5676: job 0:6895356426 is in state 'finished'
[2025-12-02 05:29:49] 2025-12-02 04:28:55,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:29:49] 2025-12-02 04:28:56,945 | INFO     | time since job start (84823s) is within the limit (172800.0s)
[2025-12-02 05:29:49] 2025-12-02 04:28:58,047 | INFO     | monitor loop #5677: job 0:6895356426 is in state 'finished'
[2025-12-02 05:29:49] 2025-12-02 04:28:58,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:29:49] 2025-12-02 04:28:58,952 | INFO     | time since job start (84825s) is within the limit (172800.0s)
[2025-12-02 05:29:49] 2025-12-02 04:29:00,552 | INFO     | monitor loop #5678: job 0:6895356426 is in state 'finished'
[2025-12-02 05:29:49] 2025-12-02 04:29:00,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:29:49] 2025-12-02 04:29:00,966 | INFO     | time since job start (84827s) is within the limit (172800.0s)
[2025-12-02 05:29:49] 2025-12-02 04:29:02,976 | INFO     | time since job start (84829s) is within the limit (172800.0s)
[2025-12-02 05:29:49] 2025-12-02 04:29:03,056 | INFO     | monitor loop #5679: job 0:6895356426 is in state 'finished'
[2025-12-02 05:29:49] 2025-12-02 04:29:03,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 05:29:49] 2025-12-02 04:29:04,168 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 05:29:49] 2025-12-02 04:29:04,169 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-12-02 05:29:49] 2025-12-02 04:29:04,171 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895356426/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 05:29:49] 2025-12-02 04:29:04,172 | INFO     | extracted standard info from prmon json
[2025-12-02 05:29:49] 2025-12-02 04:29:04,172 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 05:29:49] 2025-12-02 04:29:04,172 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 05:29:49] 2025-12-02 04:29:04,218 | INFO     | fitting pss+swap vs Time
[2025-12-02 05:29:49] 2025-12-02 04:29:04,221 | INFO     | sum of square deviations: 816691071087.9243
[2025-12-02 05:29:49] 2025-12-02 04:29:04,287 | INFO     | sum of deviations: 2719077876351.0225
[2025-12-02 05:29:49] 2025-12-02 04:29:04,287 | INFO     | mean x: 1764607527.11441
[2025-12-02 05:29:49] 2025-12-02 04:29:04,288 | INFO     | mean y: 2826679.7784214336
[2025-12-02 05:29:49] 2025-12-02 04:29:04,288 | INFO     | intersect: -5872228720.3347
[2025-12-02 05:29:49] 2025-12-02 04:29:04,290 | INFO     | chi2: 24.939222577911178
[2025-12-02 05:29:49] 2025-12-02 04:29:04,292 | INFO     | sum of square deviations: 807852937546.6919
[2025-12-02 05:29:49] 2025-12-02 04:29:04,357 | INFO     | sum of deviations: 3174065968987.6865
[2025-12-02 05:29:49] 2025-12-02 04:29:04,357 | INFO     | mean x: 1764607374.6184592
[2025-12-02 05:29:49] 2025-12-02 04:29:04,358 | INFO     | mean y: 2834528.949854651
[2025-12-02 05:29:49] 2025-12-02 04:29:04,358 | INFO     | intersect: -6930333571.43529
[2025-12-02 05:29:49] 2025-12-02 04:29:04,359 | INFO     | chi2: 21.671599248114827
[2025-12-02 05:29:49] 2025-12-02 04:29:04,360 | INFO     | current chi2=21.671599248114827 (change=13.10234639266785 %)
[2025-12-02 05:29:49] 2025-12-02 04:29:04,360 | INFO     | right removable region: 1375
[2025-12-02 05:29:49] 2025-12-02 04:29:04,362 | INFO     | sum of square deviations: 807851998756.6915
[2025-12-02 05:29:49] 2025-12-02 04:29:04,426 | INFO     | sum of deviations: 2149912612688.6235
[2025-12-02 05:29:49] 2025-12-02 04:29:04,426 | INFO     | mean x: 1764607679.6184592
[2025-12-02 05:29:49] 2025-12-02 04:29:04,426 | INFO     | mean y: 2836498.8888081396
[2025-12-02 05:29:49] 2025-12-02 04:29:04,426 | INFO     | intersect: -4693261688.276204
[2025-12-02 05:29:49] 2025-12-02 04:29:04,428 | INFO     | chi2: 20.38588515070915
[2025-12-02 05:29:49] 2025-12-02 04:29:04,428 | INFO     | current chi2=20.38588515070915 (change=18.257736033981054 %)
[2025-12-02 05:29:49] 2025-12-02 04:29:04,428 | INFO     | left removable region: 10
[2025-12-02 05:29:49] 2025-12-02 04:29:04,430 | INFO     | sum of square deviations: 788632122951.8202
[2025-12-02 05:29:49] 2025-12-02 04:29:04,500 | INFO     | sum of deviations: 2230699327681.9897
[2025-12-02 05:29:49] 2025-12-02 04:29:04,500 | INFO     | mean x: 1764607649.1274726
[2025-12-02 05:29:49] 2025-12-02 04:29:04,500 | INFO     | mean y: 2854426.9655677658
[2025-12-02 05:29:49] 2025-12-02 04:29:04,501 | INFO     | intersect: -4988457722.224721
[2025-12-02 05:29:49] 2025-12-02 04:29:04,502 | INFO     | chi2: 13.270806873344137
[2025-12-02 05:29:49] 2025-12-02 04:29:04,502 | INFO     | current memory leak: 2.83 B/s (using 1365 data points, chi2=13.27)
[2025-12-02 05:29:49] 2025-12-02 04:29:04,504 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-12-02 05:29:49] 2025-12-02 04:29:04,504 | INFO     | ..............................
[2025-12-02 05:29:49] 2025-12-02 04:29:04,504 | INFO     | . Timing measurements:
[2025-12-02 05:29:49] 2025-12-02 04:29:04,504 | INFO     | . get job = 0 s
[2025-12-02 05:29:49] 2025-12-02 04:29:04,505 | INFO     | . initial setup = 7 s
[2025-12-02 05:29:49] 2025-12-02 04:29:04,505 | INFO     | . payload setup = 167 s
[2025-12-02 05:29:49] 2025-12-02 04:29:04,505 | INFO     | . stage-in = 0 s
[2025-12-02 05:29:49] 2025-12-02 04:29:04,505 | INFO     | . payload execution = 84358 s
[2025-12-02 05:29:49] 2025-12-02 04:29:04,505 | INFO     | . stage-out = 7 s
[2025-12-02 05:29:49] 2025-12-02 04:29:04,505 | INFO     | . log creation = 2 s
[2025-12-02 05:29:49] 2025-12-02 04:29:04,505 | INFO     | ..............................
[2025-12-02 05:29:49] 2025-12-02 04:29:04,983 | INFO     | time since job start (84831s) is within the limit (172800.0s)
[2025-12-02 05:29:49] 2025-12-02 04:29:05,031 | INFO     | 
[2025-12-02 05:29:49] 2025-12-02 04:29:05,031 | INFO     | job summary report
[2025-12-02 05:29:49] 2025-12-02 04:29:05,031 | INFO     | --------------------------------------------------
[2025-12-02 05:29:49] 2025-12-02 04:29:05,032 | INFO     | PanDA job id: 6895356426
[2025-12-02 05:29:49] 2025-12-02 04:29:05,032 | INFO     | task id: 47556137
[2025-12-02 05:29:49] 2025-12-02 04:29:05,032 | INFO     | errors: (none)
[2025-12-02 05:29:49] 2025-12-02 04:29:05,032 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 05:29:49] 2025-12-02 04:29:05,032 | INFO     | pilot state: finished 
[2025-12-02 05:29:49] 2025-12-02 04:29:05,032 | INFO     | transexitcode: 0
[2025-12-02 05:29:49] 2025-12-02 04:29:05,032 | INFO     | exeerrorcode: 0
[2025-12-02 05:29:49] 2025-12-02 04:29:05,032 | INFO     | exeerrordiag: 
[2025-12-02 05:29:49] 2025-12-02 04:29:05,032 | INFO     | exitcode: 0
[2025-12-02 05:29:49] 2025-12-02 04:29:05,032 | INFO     | exitmsg: OK
[2025-12-02 05:29:49] 2025-12-02 04:29:05,032 | INFO     | cpuconsumptiontime: 315810 s
[2025-12-02 05:29:49] 2025-12-02 04:29:05,032 | INFO     | nevents: 1000
[2025-12-02 05:29:49] 2025-12-02 04:29:05,033 | INFO     | neventsw: 0
[2025-12-02 05:29:49] 2025-12-02 04:29:05,033 | INFO     | pid: 15329
[2025-12-02 05:29:49] 2025-12-02 04:29:05,033 | INFO     | pgrp: 15329
[2025-12-02 05:29:49] 2025-12-02 04:29:05,033 | INFO     | corecount: 8
[2025-12-02 05:29:49] 2025-12-02 04:29:05,033 | INFO     | event service: False
[2025-12-02 05:29:49] 2025-12-02 04:29:05,033 | INFO     | sizes: {0: 2284143, 1: 2284342, 12: 2284342, 22: 2284370, 33: 2284398, 44: 2284454, 55: 2284610, 65: 2284638, 76: 2284666, 87: 2284722, 95: 2285012, 98: 2285320, 8
[2025-12-02 05:29:49] 2025-12-02 04:29:05,033 | INFO     | --------------------------------------------------
[2025-12-02 05:29:49] 2025-12-02 04:29:05,033 | INFO     | 
[2025-12-02 05:29:49] 2025-12-02 04:29:05,033 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-02 05:29:49] 2025-12-02 04:29:05,470 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,470 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,470 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,470 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,470 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,471 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,471 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,471 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,471 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,471 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,471 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,471 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,471 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,472 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,472 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 05:29:49] 2025-12-02 04:29:05,472 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,472 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 05:29:49] 2025-12-02 04:29:05,472 | INFO     | job 6895356426 has completed (purged errors)
[2025-12-02 05:29:49] 2025-12-02 04:29:05,472 | INFO     | overall cleanup function is called
[2025-12-02 05:29:49] 2025-12-02 04:29:06,487 | INFO     | --- collectZombieJob: --- 10, [15329]
[2025-12-02 05:29:49] 2025-12-02 04:29:06,487 | INFO     | zombie collector waiting for pid 15329
[2025-12-02 05:29:49] 2025-12-02 04:29:06,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 05:29:49] 2025-12-02 04:29:06,488 | INFO     | collected zombie processes
[2025-12-02 05:29:49] 2025-12-02 04:29:06,488 | INFO     | will attempt to kill all subprocesses of pid=15329
[2025-12-02 05:29:49] 2025-12-02 04:29:06,588 | INFO     | process IDs to be killed: [15329] (in reverse order)
[2025-12-02 05:29:49] 2025-12-02 04:29:06,642 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 05:29:49] 2025-12-02 04:29:06,642 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 05:29:49] 2025-12-02 04:29:06,645 | INFO     | did not find any defunct processes belonging to 15329
[2025-12-02 05:29:49] 2025-12-02 04:29:06,648 | INFO     | did not find any defunct processes belonging to 15329
[2025-12-02 05:29:49] 2025-12-02 04:29:06,650 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 05:29:49] 2025-12-02 04:29:06,650 | INFO     | ready for new job
[2025-12-02 05:29:49] 2025-12-02 04:29:06,650 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 05:29:49] 2025-12-02 04:29:07,024 | INFO     | ***************************************
[2025-12-02 05:29:49] 2025-12-02 04:29:07,024 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 05:29:49] 2025-12-02 04:29:07,024 | INFO     | ***************************************
[2025-12-02 05:29:49] 2025-12-02 04:29:07,024 | INFO     | 
[2025-12-02 05:29:49] 2025-12-02 04:29:07,025 | INFO     | pilot is running in a VM
[2025-12-02 05:29:49] 2025-12-02 04:29:07,025 | INFO     | architecture information:
[2025-12-02 05:29:49] 2025-12-02 04:29:07,025 | INFO     | executing command: cat /etc/os-release
[2025-12-02 05:29:49] 2025-12-02 04:29:07,323 | INFO     | cat /etc/os-release:
[2025-12-02 05:29:49] NAME="CentOS Linux"
[2025-12-02 05:29:49] VERSION="7 (Core)"
[2025-12-02 05:29:49] ID="centos"
[2025-12-02 05:29:49] ID_LIKE="rhel fedora"
[2025-12-02 05:29:49] VERSION_ID="7"
[2025-12-02 05:29:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 05:29:49] ANSI_COLOR="0;31"
[2025-12-02 05:29:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 05:29:49] HOME_URL="https://www.centos.org/"
[2025-12-02 05:29:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 05:29:49] 
[2025-12-02 05:29:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 05:29:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 05:29:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 05:29:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 05:29:49] 
[2025-12-02 05:29:49] 2025-12-02 04:29:07,323 | INFO     | ***************************************
[2025-12-02 05:29:49] 2025-12-02 04:29:07,826 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-02 05:29:49] 2025-12-02 04:29:08,063 | INFO     | sufficient remaining disk space (487999930368 B)
[2025-12-02 05:29:49] 2025-12-02 04:29:08,063 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 05:29:49] 2025-12-02 04:29:08,063 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 05:29:49] 2025-12-02 04:29:08,063 | INFO     | update_server=False
[2025-12-02 05:29:49] 2025-12-02 04:29:08,064 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 05:29:49] 2025-12-02 04:29:08,096 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 05:29:49] 2025-12-02 04:29:08,096 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 05:29:49] 2025-12-02 04:29:08,096 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 05:29:49] 2025-12-02 04:29:08,097 | INFO     | will abort loop
[2025-12-02 05:29:49] 2025-12-02 04:29:08,673 | INFO     | all data control threads have been joined
[2025-12-02 05:29:49] 2025-12-02 04:29:08,833 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 05:29:49] 2025-12-02 04:29:08,837 | INFO     | all payload control threads have been joined
[2025-12-02 05:29:49] 2025-12-02 04:29:09,069 | INFO     | [job] retrieve thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:09,102 | INFO     | [job] job monitor thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:09,318 | INFO     | all job control threads have been joined
[2025-12-02 05:29:49] 2025-12-02 04:29:09,341 | INFO     | [job] validate thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:09,633 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:09,662 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 05:29:49] 2025-12-02 04:29:09,678 | INFO     | [data] control thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:09,680 | INFO     | [data] copytool_in thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:09,843 | INFO     | [payload] control thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:10,004 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:10,038 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:10,091 | INFO     | [payload] validate_post thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:10,292 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:10,323 | INFO     | [job] control thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:10,491 | INFO     | [payload] failed_post thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:10,669 | INFO     | [job] queue monitor thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:10,835 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 05:29:49] 2025-12-02 04:29:10,840 | INFO     | [data] copytool_out thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:14,844 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 05:29:49] 2025-12-02 04:29:38,136 | INFO     | PID=8755 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 05:29:49] 2025-12-02 04:29:38,136 | INFO     | .. there are 9 such processes running
[2025-12-02 05:29:49] 2025-12-02 04:29:38,137 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 05:29:49] 2025-12-02 04:29:38,137 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 05:29:49] 2025-12-02 04:29:38,137 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 05:29:49] 2025-12-02 04:29:40,520 | INFO     | [monitor] cgroup control has ended
[2025-12-02 05:29:49] 2025-12-02 04:29:40,599 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139911519631168)>', '<ExcThread(monitor, started 139911093016320)>']
[2025-12-02 05:29:49] 2025-12-02 04:29:41,154 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 05:29:49] 2025-12-02 04:29:41,154 | INFO     | [monitor] control thread has ended
[2025-12-02 05:29:49] 2025-12-02 04:29:45,625 | INFO     | all workflow threads have been joined
[2025-12-02 05:29:49] 2025-12-02 04:29:45,625 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 05:29:49] 2025-12-02 04:29:45,626 | INFO     | traces error code: 0
[2025-12-02 05:29:49] 2025-12-02 04:29:45,626 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 05:29:49] 2025-12-02 04:29:45,910 [wrapper] ==== pilot stdout END ====
[2025-12-02 05:29:49] 2025-12-02 04:29:45,961 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 05:29:49] 2025-12-02 04:29:46,039 [wrapper] pilotpid: 8755
[2025-12-02 05:29:49] 2025-12-02 04:29:46,109 [wrapper] Pilot exit status: 0
[2025-12-02 05:29:49] 2025-12-02 04:29:46,367 [wrapper] pandaids: 6895356426
[2025-12-02 05:29:49] 2025-12-02 04:29:46,964 [wrapper] cleanup supervisor_pilot  1817 8756
[2025-12-02 05:29:49] 2025-12-02 04:29:47,069 [wrapper] Test setup, not cleaning
[2025-12-02 05:29:49] 2025-12-02 04:29:47,128 [wrapper] apfmon messages muted
[2025-12-02 05:29:49] 2025-12-02 04:29:47,215 [wrapper] ==== wrapper stdout END ====
[2025-12-02 05:29:49] 2025-12-02 04:29:47,316 [wrapper] ==== wrapper stderr END ====
[2025-12-02 05:29:49]  *** Error codes and diagnostics ***
[2025-12-02 05:29:49]     "exeErrorCode": 0,
[2025-12-02 05:29:49]     "exeErrorDiag": "",
[2025-12-02 05:29:49]     "pilotErrorCode": 0,
[2025-12-02 05:29:49]     "pilotErrorDiag": "",
[2025-12-02 05:29:49]  *** Listing of results directory ***
[2025-12-02 05:29:49] total 1329540
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc    576529 Nov 23 11:16 pilot3.tar.gz
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc      5112 Nov 23 12:09 queuedata.json
[2025-12-02 05:29:49] -rwx------. 1 boinc boinc     36292 Nov 23 12:09 runpilot2-wrapper.sh
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc       100 Dec  1 05:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 05:29:49] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 05:51 run_atlas
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc       105 Dec  1 05:51 job.xml
[2025-12-02 05:29:49] -rw-r--r--. 2 boinc boinc 412344600 Dec  1 05:51 EVNT.47483658._000700.pool.root.1
[2025-12-02 05:29:49] -rw-r--r--. 2 boinc boinc    590107 Dec  1 05:51 input.tar.gz
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc      6391 Dec  1 05:51 init_data.xml
[2025-12-02 05:29:49] -rw-r--r--. 2 boinc boinc     15847 Dec  1 05:51 start_atlas.sh
[2025-12-02 05:29:49] drwxrwx--x. 2 boinc boinc        68 Dec  1 05:51 shared
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc         0 Dec  1 05:51 boinc_lockfile
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc      2785 Dec  1 05:51 pandaJob.out
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc    993248 Dec  1 05:55 agis_schedconf.cvmfs.json
[2025-12-02 05:29:49] drwx------. 5 boinc boinc      4096 Dec  1 05:55 pilot3
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc       533 Dec  2 04:57 boinc_task_state.xml
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc 917668615 Dec  2 05:25 HITS.47556137._006956.pool.root.1
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc      1031 Dec  2 05:27 memory_monitor_summary.json
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc   1516240 Dec  2 05:27 agis_ddmendpoints.agis.ALL.json
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc   2478409 Dec  2 05:27 log.47556137._006956.job.log.tgz.1
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc        95 Dec  2 05:28 pilot_heartbeat.json
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc      7944 Dec  2 05:29 heartbeat.json
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc      8192 Dec  2 05:29 boinc_mmap_file
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc        29 Dec  2 05:29 wrapper_checkpoint.txt
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc      5069 Dec  2 05:29 pilotlog.txt
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc  11287395 Dec  2 05:29 log.47556137._006956.job.log.1
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc       353 Dec  2 05:29 output.list
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc       620 Dec  2 05:29 runtime_log
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc  13783040 Dec  2 05:29 result.tar.gz
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc      8817 Dec  2 05:29 runtime_log.err
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc       662 Dec  2 05:29 pT2NDmA9Mh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5oKKDmEX1CQm.diag
[2025-12-02 05:29:49] -rw-r--r--. 1 boinc boinc     21418 Dec  2 05:29 stderr.txt
[2025-12-02 05:29:49] HITS file was successfully produced:
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc 917668615 Dec  2 05:25 shared/HITS.pool.root.1
[2025-12-02 05:29:49]  *** Contents of shared directory: ***
[2025-12-02 05:29:49] total 1312904
[2025-12-02 05:29:49] -rw-r--r--. 2 boinc boinc 412344600 Dec  1 05:51 ATLAS.root_0
[2025-12-02 05:29:49] -rw-r--r--. 2 boinc boinc    590107 Dec  1 05:51 input.tar.gz
[2025-12-02 05:29:49] -rw-r--r--. 2 boinc boinc     15847 Dec  1 05:51 start_atlas.sh
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc 917668615 Dec  2 05:25 HITS.pool.root.1
[2025-12-02 05:29:49] -rw-------. 1 boinc boinc  13783040 Dec  2 05:29 result.tar.gz
05:29:51 (4932): run_atlas exited; CPU time 316445.540393
05:29:51 (4932): called boinc_finish(0)

</stderr_txt>
]]>

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