Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:20 (2283140): wrapper (7.7.26015): starting
00:04:20 (2283140): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 00:04:20] Arguments: --nthreads 8
[2025-11-29 00:04:20] Threads: 8
[2025-11-29 00:04:20] Checking for CVMFS
[2025-11-29 00:04:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 00:04:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 00:04:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 00:04:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 00:04:23] 2.13.3.0 22787 33875 265836 153430 1 698 40139489 40960001 51858 16776704 0 493749078 99.750 298184078 46840 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 00:04:23] CVMFS is ok
[2025-11-29 00:04:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 00:04:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 00:04:23] Further information can be found at the LHC@home message board.
[2025-11-29 00:04:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 00:04:23] Checking for apptainer binary...
[2025-11-29 00:04:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 00:04:23] Running /usr/bin/apptainer --version
[2025-11-29 00:04:23] apptainer version 1.4.4-1.el9
[2025-11-29 00:04:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 00:04:24] c8-6-11.aglt2.org
[2025-11-29 00:04:24] apptainer works
[2025-11-29 00:04:24] Set ATHENA_PROC_NUMBER=8
[2025-11-29 00:04:24] Set ATHENA_CORE_NUMBER=8
[2025-11-29 00:04:24] Starting ATLAS job with PandaID=6893874627
[2025-11-29 00:04:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:08 (2283140): BOINC client no longer exists - exiting
00:20:08 (2283140): timer handler: client dead, exiting
00:22:43 (2591931): wrapper (7.7.26015): starting
00:22:43 (2591931): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 00:22:43] Arguments: --nthreads 8
[2025-11-29 00:22:43] Threads: 8
[2025-11-29 00:22:43] This job has been restarted, cleaning up previous attempt
[2025-11-29 00:22:43] Checking for CVMFS
[2025-11-29 00:22:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 00:22:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 00:22:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 00:22:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 00:22:45] 2.13.3.0 22787 33894 249976 153432 2 125 40512837 40960001 45371 16776704 0 494322594 99.750 298321596 46838 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 00:22:45] CVMFS is ok
[2025-11-29 00:22:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 00:22:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 00:22:45] Further information can be found at the LHC@home message board.
[2025-11-29 00:22:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 00:22:45] Checking for apptainer binary...
[2025-11-29 00:22:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 00:22:45] Running /usr/bin/apptainer --version
[2025-11-29 00:22:45] apptainer version 1.4.4-1.el9
[2025-11-29 00:22:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 00:22:45] c8-6-11.aglt2.org
[2025-11-29 00:22:45] apptainer works
[2025-11-29 00:22:45] Set ATHENA_PROC_NUMBER=8
[2025-11-29 00:22:45] Set ATHENA_CORE_NUMBER=8
[2025-11-29 00:22:45] Starting ATLAS job with PandaID=6893874627
[2025-11-29 00:22:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 00:02:41]  *** The last 200 lines of the pilot log: ***
[2025-11-30 00:02:41] 2025-11-29 16:35:29,700 | INFO     | .. there are 100 such processes running
[2025-11-30 00:02:41] 2025-11-29 16:35:30,702 | INFO     | time since job start (40343s) is within the limit (172800.0s)
[2025-11-30 00:02:41] 2025-11-29 16:35:31,770 | INFO     | monitor loop #1705: job 0:6893874627 is in state 'finished'
[2025-11-30 00:02:41] 2025-11-29 16:35:31,770 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:02:41] 2025-11-29 16:35:32,709 | INFO     | time since job start (40345s) is within the limit (172800.0s)
[2025-11-30 00:02:41] 2025-11-29 16:35:34,293 | INFO     | monitor loop #1706: job 0:6893874627 is in state 'finished'
[2025-11-30 00:02:41] 2025-11-29 16:35:34,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:02:41] 2025-11-29 16:35:34,723 | INFO     | time since job start (40347s) is within the limit (172800.0s)
[2025-11-30 00:02:41] 2025-11-29 16:35:36,732 | INFO     | time since job start (40349s) is within the limit (172800.0s)
[2025-11-30 00:02:41] 2025-11-29 16:35:36,821 | INFO     | monitor loop #1707: job 0:6893874627 is in state 'finished'
[2025-11-30 00:02:41] 2025-11-29 16:35:36,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:02:41] 2025-11-29 16:35:38,378 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-30 00:02:41] 2025-11-29 16:35:38,444 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1220781250026
[2025-11-30 00:02:41] 2025-11-29 16:35:38,655 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6893874627/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 00:02:41] 2025-11-29 16:35:38,655 | INFO     | extracted standard info from prmon json
[2025-11-30 00:02:41] 2025-11-29 16:35:38,656 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 00:02:41] 2025-11-29 16:35:38,743 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 00:02:41] 2025-11-29 16:35:38,742 | INFO     | time since job start (40351s) is within the limit (172800.0s)
[2025-11-30 00:02:41] 2025-11-29 16:35:38,832 | INFO     | fitting pss+swap vs Time
[2025-11-30 00:02:41] 2025-11-29 16:35:38,833 | INFO     | sum of square deviations: 89145319731.6528
[2025-11-30 00:02:41] 2025-11-29 16:35:39,062 | INFO     | sum of deviations: -734168066942.571
[2025-11-30 00:02:41] 2025-11-29 16:35:39,110 | INFO     | mean x: 1764413954.1712122
[2025-11-30 00:02:41] 2025-11-29 16:35:39,110 | INFO     | mean y: 2767524.8015151517
[2025-11-30 00:02:41] 2025-11-29 16:35:39,110 | INFO     | intersect: 14533831925.263002
[2025-11-30 00:02:41] 2025-11-29 16:35:39,110 | INFO     | chi2: 31.482700392596772
[2025-11-30 00:02:41] 2025-11-29 16:35:39,111 | INFO     | sum of square deviations: 87134883547.58144
[2025-11-30 00:02:41] 2025-11-29 16:35:39,214 | INFO     | sum of deviations: -514563256665.27783
[2025-11-30 00:02:41] 2025-11-29 16:35:39,214 | INFO     | mean x: 1764413801.6839695
[2025-11-30 00:02:41] 2025-11-29 16:35:39,214 | INFO     | mean y: 2784172.906870229
[2025-11-30 00:02:41] 2025-11-29 16:35:39,214 | INFO     | intersect: 10422290975.872778
[2025-11-30 00:02:41] 2025-11-29 16:35:39,427 | INFO     | monitor loop #1708: job 0:6893874627 is in state 'finished'
[2025-11-30 00:02:41] 2025-11-29 16:35:39,427 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:02:41] 2025-11-29 16:35:39,427 | INFO     | chi2: 27.39371015490706
[2025-11-30 00:02:41] 2025-11-29 16:35:39,427 | INFO     | current chi2=27.39371015490706 (change=12.988054349528571 %)
[2025-11-30 00:02:41] 2025-11-29 16:35:39,427 | INFO     | right removable region: 654
[2025-11-30 00:02:41] 2025-11-29 16:35:39,428 | INFO     | sum of square deviations: 87134451417.73428
[2025-11-30 00:02:41] 2025-11-29 16:35:39,635 | INFO     | sum of deviations: -884470984154.8577
[2025-11-30 00:02:41] 2025-11-29 16:35:39,635 | INFO     | mean x: 1764414106.6748092
[2025-11-30 00:02:41] 2025-11-29 16:35:39,635 | INFO     | mean y: 2778895.5358778625
[2025-11-30 00:02:41] 2025-11-29 16:35:39,635 | INFO     | intersect: 17912722161.32618
[2025-11-30 00:02:41] 2025-11-29 16:35:39,635 | INFO     | chi2: 29.738508071675216
[2025-11-30 00:02:41] 2025-11-29 16:35:39,635 | INFO     | current chi2=29.738508071675216 (change=5.540161101719555 %)
[2025-11-30 00:02:41] 2025-11-29 16:35:39,635 | INFO     | left removable region: 10
[2025-11-30 00:02:41] 2025-11-29 16:35:39,636 | INFO     | sum of square deviations: 82817928099.3478
[2025-11-30 00:02:41] 2025-11-29 16:35:39,649 | INFO     | sum of deviations: -671311293810.4565
[2025-11-30 00:02:41] 2025-11-29 16:35:39,649 | INFO     | mean x: 1764414076.1956522
[2025-11-30 00:02:41] 2025-11-29 16:35:39,649 | INFO     | mean y: 2802280.9798136647
[2025-11-30 00:02:41] 2025-11-29 16:35:39,649 | INFO     | intersect: 14304912023.297947
[2025-11-30 00:02:41] 2025-11-29 16:35:39,649 | INFO     | chi2: 24.895902839031226
[2025-11-30 00:02:41] 2025-11-29 16:35:39,649 | INFO     | current memory leak: -8.11 B/s (using 644 data points, chi2=24.90)
[2025-11-30 00:02:41] 2025-11-29 16:35:39,650 | INFO     | could have reported an average CPU frequency of 3797 MHz (25 samples)
[2025-11-30 00:02:41] 2025-11-29 16:35:39,650 | INFO     | ..............................
[2025-11-30 00:02:41] 2025-11-29 16:35:39,650 | INFO     | . Timing measurements:
[2025-11-30 00:02:41] 2025-11-29 16:35:39,650 | INFO     | . get job = 0 s
[2025-11-30 00:02:41] 2025-11-29 16:35:39,650 | INFO     | . initial setup = 1 s
[2025-11-30 00:02:41] 2025-11-29 16:35:39,650 | INFO     | . payload setup = 15 s
[2025-11-30 00:02:41] 2025-11-29 16:35:39,650 | INFO     | . stage-in = 0 s
[2025-11-30 00:02:41] 2025-11-29 16:35:39,650 | INFO     | . payload execution = 40258 s
[2025-11-30 00:02:41] 2025-11-29 16:35:39,650 | INFO     | . stage-out = 7 s
[2025-11-30 00:02:41] 2025-11-29 16:35:39,650 | INFO     | . log creation = 2 s
[2025-11-30 00:02:41] 2025-11-29 16:35:39,650 | INFO     | ..............................
[2025-11-30 00:02:41] 2025-11-29 16:35:39,778 | INFO     | 
[2025-11-30 00:02:41] 2025-11-29 16:35:39,778 | INFO     | job summary report
[2025-11-30 00:02:41] 2025-11-29 16:35:39,778 | INFO     | --------------------------------------------------
[2025-11-30 00:02:41] 2025-11-29 16:35:39,778 | INFO     | PanDA job id: 6893874627
[2025-11-30 00:02:41] 2025-11-29 16:35:39,778 | INFO     | task id: 47523449
[2025-11-30 00:02:41] 2025-11-29 16:35:39,778 | INFO     | errors: (none)
[2025-11-30 00:02:41] 2025-11-29 16:35:39,778 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 00:02:41] 2025-11-29 16:35:39,778 | INFO     | pilot state: finished 
[2025-11-30 00:02:41] 2025-11-29 16:35:39,779 | INFO     | transexitcode: 0
[2025-11-30 00:02:41] 2025-11-29 16:35:39,779 | INFO     | exeerrorcode: 0
[2025-11-30 00:02:41] 2025-11-29 16:35:39,779 | INFO     | exeerrordiag: 
[2025-11-30 00:02:41] 2025-11-29 16:35:39,779 | INFO     | exitcode: 0
[2025-11-30 00:02:41] 2025-11-29 16:35:39,779 | INFO     | exitmsg: OK
[2025-11-30 00:02:41] 2025-11-29 16:35:39,779 | INFO     | cpuconsumptiontime: 137037 s
[2025-11-30 00:02:41] 2025-11-29 16:35:39,792 | INFO     | nevents: 1000
[2025-11-30 00:02:41] 2025-11-29 16:35:39,792 | INFO     | neventsw: 0
[2025-11-30 00:02:41] 2025-11-29 16:35:39,792 | INFO     | pid: 2787121
[2025-11-30 00:02:41] 2025-11-29 16:35:39,792 | INFO     | pgrp: 2787121
[2025-11-30 00:02:41] 2025-11-29 16:35:39,792 | INFO     | corecount: 8
[2025-11-30 00:02:41] 2025-11-29 16:35:39,792 | INFO     | event service: False
[2025-11-30 00:02:41] 2025-11-29 16:35:39,792 | INFO     | sizes: {0: 2284315, 11: 2284315, 12: 2284605, 21: 2284633, 40274: 2324945, 40275: 2324944, 40282: 2334124, 40284: 2334180, 40320: 2334490}
[2025-11-30 00:02:41] 2025-11-29 16:35:39,792 | INFO     | --------------------------------------------------
[2025-11-30 00:02:41] 2025-11-29 16:35:39,792 | INFO     | 
[2025-11-30 00:02:41] 2025-11-29 16:35:39,792 | INFO     | executing command: ls -lF /tmp/boinchome/slots/15
[2025-11-30 00:02:41] 2025-11-29 16:35:39,862 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,863 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 00:02:41] 2025-11-29 16:35:39,864 | INFO     | job 6893874627 has completed (purged errors)
[2025-11-30 00:02:41] 2025-11-29 16:35:39,864 | INFO     | overall cleanup function is called
[2025-11-30 00:02:41] 2025-11-29 16:35:40,884 | INFO     | --- collectZombieJob: --- 10, [2787121]
[2025-11-30 00:02:41] 2025-11-29 16:35:40,884 | INFO     | zombie collector waiting for pid 2787121
[2025-11-30 00:02:41] 2025-11-29 16:35:40,884 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 00:02:41] 2025-11-29 16:35:40,884 | INFO     | collected zombie processes
[2025-11-30 00:02:41] 2025-11-29 16:35:40,884 | INFO     | will attempt to kill all subprocesses of pid=2787121
[2025-11-30 00:02:41] 2025-11-29 16:35:42,111 | INFO     | process IDs to be killed: [2787121] (in reverse order)
[2025-11-30 00:02:41] 2025-11-29 16:35:42,532 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 00:02:41] 2025-11-29 16:35:42,532 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 00:02:41] 2025-11-29 16:35:42,669 | INFO     | did not find any defunct processes belonging to 2787121
[2025-11-30 00:02:41] 2025-11-29 16:35:42,944 | INFO     | did not find any defunct processes belonging to 2787121
[2025-11-30 00:02:41] 2025-11-29 16:35:42,955 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 00:02:41] 2025-11-29 16:35:42,955 | INFO     | ready for new job
[2025-11-30 00:02:41] 2025-11-29 16:35:42,955 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 00:02:41] 2025-11-29 16:35:42,998 | INFO     | ***************************************
[2025-11-30 00:02:41] 2025-11-29 16:35:43,146 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 00:02:41] 2025-11-29 16:35:43,146 | INFO     | ***************************************
[2025-11-30 00:02:41] 2025-11-29 16:35:43,146 | INFO     | 
[2025-11-30 00:02:41] 2025-11-29 16:35:43,313 | INFO     | architecture information:
[2025-11-30 00:02:41] 2025-11-29 16:35:43,344 | INFO     | executing command: cat /etc/os-release
[2025-11-30 00:02:41] 2025-11-29 16:35:43,406 | INFO     | cat /etc/os-release:
[2025-11-30 00:02:41] NAME="CentOS Linux"
[2025-11-30 00:02:41] VERSION="7 (Core)"
[2025-11-30 00:02:41] ID="centos"
[2025-11-30 00:02:41] ID_LIKE="rhel fedora"
[2025-11-30 00:02:41] VERSION_ID="7"
[2025-11-30 00:02:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 00:02:41] ANSI_COLOR="0;31"
[2025-11-30 00:02:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 00:02:41] HOME_URL="https://www.centos.org/"
[2025-11-30 00:02:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 00:02:41] 
[2025-11-30 00:02:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 00:02:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 00:02:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 00:02:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 00:02:41] 
[2025-11-30 00:02:41] 2025-11-29 16:35:43,407 | INFO     | ***************************************
[2025-11-30 00:02:41] 2025-11-29 16:35:43,910 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-11-30 00:02:41] 2025-11-29 16:35:43,971 | INFO     | sufficient remaining disk space (156072148992 B)
[2025-11-30 00:02:41] 2025-11-29 16:35:43,971 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 00:02:41] 2025-11-29 16:35:43,971 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 00:02:41] 2025-11-29 16:35:43,971 | INFO     | update_server=False
[2025-11-30 00:02:41] 2025-11-29 16:35:43,971 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 00:02:41] 2025-11-29 16:35:44,012 | INFO     | all data control threads have been joined
[2025-11-30 00:02:41] 2025-11-29 16:35:44,177 | INFO     | all payload control threads have been joined
[2025-11-30 00:02:41] 2025-11-29 16:35:44,495 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-30 00:02:41] 2025-11-29 16:35:44,495 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-30 00:02:41] 2025-11-29 16:35:44,495 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 00:02:41] 2025-11-29 16:35:44,495 | INFO     | will abort loop
[2025-11-30 00:02:41] 2025-11-29 16:35:44,796 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 00:02:41] 2025-11-29 16:35:44,977 | INFO     | [job] retrieve thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:45,021 | INFO     | [data] control thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:45,165 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 00:02:41] 2025-11-29 16:35:45,183 | INFO     | [payload] control thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:45,259 | INFO     | all job control threads have been joined
[2025-11-30 00:02:41] 2025-11-29 16:35:45,275 | INFO     | [payload] failed_post thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:45,465 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:45,509 | INFO     | [job] job monitor thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:45,804 | INFO     | [job] queue monitor thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:45,873 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 00:02:41] 2025-11-29 16:35:45,990 | INFO     | [payload] validate_post thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:46,266 | INFO     | [job] control thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:46,285 | INFO     | [job] validate thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:46,285 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:46,285 | INFO     | [data] copytool_in thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:46,285 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:47,172 | INFO     | [data] copytool_out thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:49,895 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:35:54,828 | INFO     | job.realtimelogging is not enabled
[2025-11-30 00:02:41] 2025-11-29 16:35:55,834 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 00:02:41] 2025-11-29 16:36:21,941 | INFO     | PID=2654362 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 00:02:41] 2025-11-29 16:36:21,941 | INFO     | .. there are 100 such processes running
[2025-11-30 00:02:41] 2025-11-29 16:36:21,942 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 00:02:41] 2025-11-29 16:36:21,942 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 00:02:41] 2025-11-29 16:36:21,942 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 00:02:41] 2025-11-29 16:36:31,704 | INFO     | [monitor] cgroup control has ended
[2025-11-30 00:02:41] 2025-11-29 16:36:33,296 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139762542802752)>', '<ExcThread(monitor, started 139762274899712)>']
[2025-11-30 00:02:41] 2025-11-29 16:36:34,141 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 00:02:41] 2025-11-29 16:36:34,141 | INFO     | [monitor] control thread has ended
[2025-11-30 00:02:41] 2025-11-29 16:36:38,322 | INFO     | all workflow threads have been joined
[2025-11-30 00:02:41] 2025-11-29 16:36:38,322 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 00:02:41] 2025-11-29 16:36:38,322 | INFO     | traces error code: 0
[2025-11-30 00:02:41] 2025-11-29 16:36:38,322 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 00:02:41] 2025-11-29 16:36:43,538 [wrapper] ==== pilot stdout END ====
[2025-11-30 00:02:41] 2025-11-29 16:36:43,622 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 00:02:41] 2025-11-29 16:36:43,634 [wrapper] pilotpid: 2654362
[2025-11-30 00:02:41] 2025-11-29 16:36:43,679 [wrapper] Pilot exit status: 0
[2025-11-30 00:02:41] 2025-11-29 16:36:43,776 [wrapper] pandaids: 6893874627 6893874627
[2025-11-30 00:02:41] 2025-11-29 16:36:44,003 [wrapper] cleanup supervisor_pilot 3680897 2654363
[2025-11-30 00:02:41] 2025-11-29 16:36:44,070 [wrapper] Test setup, not cleaning
[2025-11-30 00:02:41] 2025-11-29 16:36:44,090 [wrapper] apfmon messages muted
[2025-11-30 00:02:41] 2025-11-29 16:36:44,129 [wrapper] ==== wrapper stdout END ====
[2025-11-30 00:02:41] 2025-11-29 16:36:44,169 [wrapper] ==== wrapper stderr END ====
[2025-11-30 00:02:41]  *** Error codes and diagnostics ***
[2025-11-30 00:02:41]     "exeErrorCode": 0,
[2025-11-30 00:02:41]     "exeErrorDiag": "",
[2025-11-30 00:02:41]     "pilotErrorCode": 0,
[2025-11-30 00:02:41]     "pilotErrorDiag": "",
[2025-11-30 00:02:41]  *** Listing of results directory ***
[2025-11-30 00:02:41] total 1721792
[2025-11-30 00:02:41] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 11:08 pilot3.tar.gz
[2025-11-30 00:02:41] -rwx------. 1 boincer umatlas     36292 Nov 20 11:16 runpilot2-wrapper.sh
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 11:16 queuedata.json
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas       100 Nov 29 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 00:02:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 00:04 run_atlas
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas       105 Nov 29 00:04 job.xml
[2025-11-30 00:02:41] -rw-r--r--. 3 boincer umatlas 411865293 Nov 29 00:04 EVNT.47493127._000728.pool.root.1
[2025-11-30 00:02:41] -rw-r--r--. 3 boincer umatlas 411865293 Nov 29 00:04 ATLAS.root_0
[2025-11-30 00:02:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 00:04 start_atlas.sh
[2025-11-30 00:02:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 00:04 shared
[2025-11-30 00:02:41] -rw-r--r--. 2 boincer umatlas    590098 Nov 29 00:04 input.tar.gz
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas         0 Nov 29 00:04 boinc_lockfile
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas      2785 Nov 29 00:22 pandaJob.out
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas        57 Nov 29 00:22 setup.sh.local
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas    991826 Nov 29 00:23 agis_schedconf.cvmfs.json
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas       530 Nov 29 10:55 boinc_task_state.xml
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas 923521823 Nov 29 11:32 HITS.47523449._007280.pool.root.1
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas      1066 Nov 29 11:34 memory_monitor_summary.json
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas   1516240 Nov 29 11:34 agis_ddmendpoints.agis.ALL.json
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas   1804917 Nov 29 11:35 log.47523449._007280.job.log.tgz.1
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas        95 Nov 29 11:35 pilot_heartbeat.json
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas      7957 Nov 29 11:35 heartbeat.json
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas      5085 Nov 29 11:36 pilotlog.txt
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas   4162951 Nov 29 11:36 log.47523449._007280.job.log.1
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas       353 Nov 29 11:36 output.list
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas       620 Nov 29 11:36 runtime_log
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas   5990400 Nov 29 11:36 result.tar.gz
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas       788 Nov 29 11:36 wf2NDmmVMg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBIIKDmmliP2n.diag
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas      9441 Nov 29 11:36 runtime_log.err
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas      7173 Nov 29 23:58 init_data.xml
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas        27 Nov 30 00:02 wrapper_checkpoint.txt
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 30 00:02 boinc_mmap_file
[2025-11-30 00:02:41] -rw-r--r--. 1 boincer umatlas     24004 Nov 30 00:02 stderr.txt
[2025-11-30 00:02:41] HITS file was successfully produced:
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas 923521823 Nov 29 11:32 shared/HITS.pool.root.1
[2025-11-30 00:02:41]  *** Contents of shared directory: ***
[2025-11-30 00:02:41] total 1310548
[2025-11-30 00:02:41] -rw-r--r--. 3 boincer umatlas 411865293 Nov 29 00:04 ATLAS.root_0
[2025-11-30 00:02:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 00:04 start_atlas.sh
[2025-11-30 00:02:41] -rw-r--r--. 2 boincer umatlas    590098 Nov 29 00:04 input.tar.gz
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas 923521823 Nov 29 11:32 HITS.pool.root.1
[2025-11-30 00:02:41] -rw-------. 1 boincer umatlas   5990400 Nov 29 11:36 result.tar.gz
00:02:43 (2591931): run_atlas exited; CPU time 137600.912340
00:02:43 (2591931): called boinc_finish(0)

</stderr_txt>
]]>

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