Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:59 (2276784): wrapper (7.7.26015): starting
00:03:59 (2276784): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 00:03:59] Arguments: --nthreads 8
[2025-11-29 00:03:59] Threads: 8
[2025-11-29 00:03:59] Checking for CVMFS
[2025-11-29 00:04:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 00:04:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 00:04:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 00:04:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 00:04:02] 2.13.3.0 22787 33875 265836 153430 1 698 40139489 40960001 51485 16776704 0 493729832 99.750 298184078 46840 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 00:04:02] CVMFS is ok
[2025-11-29 00:04:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 00:04:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 00:04:02] Further information can be found at the LHC@home message board.
[2025-11-29 00:04:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 00:04:02] Checking for apptainer binary...
[2025-11-29 00:04:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 00:04:02] Running /usr/bin/apptainer --version
[2025-11-29 00:04:02] apptainer version 1.4.4-1.el9
[2025-11-29 00:04:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 00:04:03] c8-6-11.aglt2.org
[2025-11-29 00:04:03] apptainer works
[2025-11-29 00:04:03] Set ATHENA_PROC_NUMBER=8
[2025-11-29 00:04:03] Set ATHENA_CORE_NUMBER=8
[2025-11-29 00:04:03] Starting ATLAS job with PandaID=6893857593
[2025-11-29 00:04:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:08 (2276784): BOINC client no longer exists - exiting
00:20:08 (2276784): timer handler: client dead, exiting
00:22:43 (2591929): wrapper (7.7.26015): starting
00:22:43 (2591929): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 00:22:43] Arguments: --nthreads 8
[2025-11-29 00:22:43] Threads: 8
[2025-11-29 00:22:43] This job has been restarted, cleaning up previous attempt
[2025-11-29 00:22:43] Checking for CVMFS
[2025-11-29 00:22:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 00:22:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 00:22:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 00:22:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 00:22:45] 2.13.3.0 22787 33894 249976 153432 2 125 40512837 40960001 45371 16776704 0 494322648 99.750 298321596 46838 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-29 00:22:45] CVMFS is ok
[2025-11-29 00:22:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 00:22:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 00:22:45] Further information can be found at the LHC@home message board.
[2025-11-29 00:22:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 00:22:45] Checking for apptainer binary...
[2025-11-29 00:22:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 00:22:45] Running /usr/bin/apptainer --version
[2025-11-29 00:22:45] apptainer version 1.4.4-1.el9
[2025-11-29 00:22:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 00:22:45] c8-6-11.aglt2.org
[2025-11-29 00:22:45] apptainer works
[2025-11-29 00:22:45] Set ATHENA_PROC_NUMBER=8
[2025-11-29 00:22:45] Set ATHENA_CORE_NUMBER=8
[2025-11-29 00:22:45] Starting ATLAS job with PandaID=6893857593
[2025-11-29 00:22:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 00:12:47]  *** The last 200 lines of the pilot log: ***
[2025-11-30 00:12:47] 2025-11-30 05:11:20,361 | INFO     | time since job start (85693s) is within the limit (172800.0s)
[2025-11-30 00:12:47] 2025-11-30 05:11:20,534 | INFO     | monitor loop #3912: job 0:6893857593 is in state 'finished'
[2025-11-30 00:12:47] 2025-11-30 05:11:20,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:12:47] 2025-11-30 05:11:20,567 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-30 00:12:47] 2025-11-30 05:11:20,571 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3653.428804687501
[2025-11-30 00:12:47] 2025-11-30 05:11:20,579 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6893857593/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 00:12:47] 2025-11-30 05:11:20,579 | INFO     | extracted standard info from prmon json
[2025-11-30 00:12:47] 2025-11-30 05:11:20,579 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 00:12:47] 2025-11-30 05:11:20,579 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 00:12:47] 2025-11-30 05:11:20,586 | INFO     | fitting pss+swap vs Time
[2025-11-30 00:12:47] 2025-11-30 05:11:20,586 | INFO     | sum of square deviations: 858177958614.7614
[2025-11-30 00:12:47] 2025-11-30 05:11:20,601 | INFO     | sum of deviations: 3955435967088.2095
[2025-11-30 00:12:47] 2025-11-30 05:11:20,601 | INFO     | mean x: 1764436647.10755
[2025-11-30 00:12:47] 2025-11-30 05:11:20,601 | INFO     | mean y: 2873483.9985754983
[2025-11-30 00:12:47] 2025-11-30 05:11:20,601 | INFO     | intersect: -8129607786.999291
[2025-11-30 00:12:47] 2025-11-30 05:11:20,602 | INFO     | chi2: 3.6048683917502085
[2025-11-30 00:12:47] 2025-11-30 05:11:20,602 | INFO     | sum of square deviations: 849042643131.7925
[2025-11-30 00:12:47] 2025-11-30 05:11:20,617 | INFO     | sum of deviations: 4180691183373.312
[2025-11-30 00:12:47] 2025-11-30 05:11:20,617 | INFO     | mean x: 1764436494.6132953
[2025-11-30 00:12:47] 2025-11-30 05:11:20,617 | INFO     | mean y: 2877237.6826304505
[2025-11-30 00:12:47] 2025-11-30 05:11:20,617 | INFO     | intersect: -8685218886.020418
[2025-11-30 00:12:47] 2025-11-30 05:11:20,618 | INFO     | chi2: 2.303079135069614
[2025-11-30 00:12:47] 2025-11-30 05:11:20,618 | INFO     | current chi2=2.303079135069614 (change=36.11197733764032 %)
[2025-11-30 00:12:47] 2025-11-30 05:11:20,618 | INFO     | sum of square deviations: 839972398636.2323
[2025-11-30 00:12:47] 2025-11-30 05:11:20,633 | INFO     | sum of deviations: 4145174085181.33
[2025-11-30 00:12:47] 2025-11-30 05:11:20,633 | INFO     | mean x: 1764436342.1190817
[2025-11-30 00:12:47] 2025-11-30 05:11:20,633 | INFO     | mean y: 2876640.570301291
[2025-11-30 00:12:47] 2025-11-30 05:11:20,633 | INFO     | intersect: -8704428280.613894
[2025-11-30 00:12:47] 2025-11-30 05:11:20,633 | INFO     | chi2: 2.3023011381907996
[2025-11-30 00:12:47] 2025-11-30 05:11:20,633 | INFO     | current chi2=2.3023011381907996 (change=0.03378072715642474 %)
[2025-11-30 00:12:47] 2025-11-30 05:11:20,633 | INFO     | right removable region: 1393
[2025-11-30 00:12:47] 2025-11-30 05:11:20,634 | INFO     | sum of square deviations: 849041522810.4664
[2025-11-30 00:12:47] 2025-11-30 05:11:20,648 | INFO     | sum of deviations: 3613904821256.362
[2025-11-30 00:12:47] 2025-11-30 05:11:20,649 | INFO     | mean x: 1764436799.6111507
[2025-11-30 00:12:47] 2025-11-30 05:11:20,649 | INFO     | mean y: 2879178.541100786
[2025-11-30 00:12:47] 2025-11-30 05:11:20,649 | INFO     | intersect: -7507362058.906983
[2025-11-30 00:12:47] 2025-11-30 05:11:20,649 | INFO     | chi2: 1.6885171372494074
[2025-11-30 00:12:47] 2025-11-30 05:11:20,649 | INFO     | current chi2=1.6885171372494074 (change=53.160089252811495 %)
[2025-11-30 00:12:47] 2025-11-30 05:11:20,650 | INFO     | sum of square deviations: 839970756588.2067
[2025-11-30 00:12:47] 2025-11-30 05:11:20,664 | INFO     | sum of deviations: 3489631886999.466
[2025-11-30 00:12:47] 2025-11-30 05:11:20,664 | INFO     | mean x: 1764436952.109756
[2025-11-30 00:12:47] 2025-11-30 05:11:20,664 | INFO     | mean y: 2881267.657101865
[2025-11-30 00:12:47] 2025-11-30 05:11:20,664 | INFO     | intersect: -7327416129.471119
[2025-11-30 00:12:47] 2025-11-30 05:11:20,665 | INFO     | chi2: 1.5793436995649812
[2025-11-30 00:12:47] 2025-11-30 05:11:20,665 | INFO     | current chi2=1.5793436995649812 (change=6.465639896451962 %)
[2025-11-30 00:12:47] 2025-11-30 05:11:20,665 | INFO     | left removable region: 20
[2025-11-30 00:12:47] 2025-11-30 05:11:20,665 | INFO     | sum of square deviations: 802579821617.0588
[2025-11-30 00:12:47] 2025-11-30 05:11:20,679 | INFO     | sum of deviations: 3481434192652.986
[2025-11-30 00:12:47] 2025-11-30 05:11:20,679 | INFO     | mean x: 1764436921.6212673
[2025-11-30 00:12:47] 2025-11-30 05:11:20,679 | INFO     | mean y: 2887731.117261471
[2025-11-30 00:12:47] 2025-11-30 05:11:20,679 | INFO     | intersect: -7650894315.551991
[2025-11-30 00:12:47] 2025-11-30 05:11:20,680 | INFO     | chi2: 0.16814397917021426
[2025-11-30 00:12:47] 2025-11-30 05:11:20,680 | INFO     | current memory leak: 4.34 B/s (using 1373 data points, chi2=0.17)
[2025-11-30 00:12:47] 2025-11-30 05:11:20,681 | INFO     | could have reported an average CPU frequency of 3795 MHz (49 samples)
[2025-11-30 00:12:47] 2025-11-30 05:11:20,681 | INFO     | ..............................
[2025-11-30 00:12:47] 2025-11-30 05:11:20,681 | INFO     | . Timing measurements:
[2025-11-30 00:12:47] 2025-11-30 05:11:20,681 | INFO     | . get job = 0 s
[2025-11-30 00:12:47] 2025-11-30 05:11:20,681 | INFO     | . initial setup = 1 s
[2025-11-30 00:12:47] 2025-11-30 05:11:20,681 | INFO     | . payload setup = 14 s
[2025-11-30 00:12:47] 2025-11-30 05:11:20,681 | INFO     | . stage-in = 0 s
[2025-11-30 00:12:47] 2025-11-30 05:11:20,681 | INFO     | . payload execution = 85632 s
[2025-11-30 00:12:47] 2025-11-30 05:11:20,681 | INFO     | . stage-out = 2 s
[2025-11-30 00:12:47] 2025-11-30 05:11:20,681 | INFO     | . log creation = 0 s
[2025-11-30 00:12:47] 2025-11-30 05:11:20,681 | INFO     | ..............................
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | 
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | job summary report
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | --------------------------------------------------
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | PanDA job id: 6893857593
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | task id: 47523449
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | errors: (none)
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | pilot state: finished 
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | transexitcode: 0
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | exeerrorcode: 0
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | exeerrordiag: 
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | exitcode: 0
[2025-11-30 00:12:47] 2025-11-30 05:11:21,104 | INFO     | exitmsg: OK
[2025-11-30 00:12:47] 2025-11-30 05:11:21,105 | INFO     | cpuconsumptiontime: 136806 s
[2025-11-30 00:12:47] 2025-11-30 05:11:21,105 | INFO     | nevents: 1000
[2025-11-30 00:12:47] 2025-11-30 05:11:21,105 | INFO     | neventsw: 0
[2025-11-30 00:12:47] 2025-11-30 05:11:21,105 | INFO     | pid: 2786562
[2025-11-30 00:12:47] 2025-11-30 05:11:21,105 | INFO     | pgrp: 2786562
[2025-11-30 00:12:47] 2025-11-30 05:11:21,105 | INFO     | corecount: 8
[2025-11-30 00:12:47] 2025-11-30 05:11:21,105 | INFO     | event service: False
[2025-11-30 00:12:47] 2025-11-30 05:11:21,105 | INFO     | sizes: {0: 2284316, 11: 2284578, 22: 2284606, 85651: 2347333, 85655: 2356385, 85661: 2356575}
[2025-11-30 00:12:47] 2025-11-30 05:11:21,105 | INFO     | --------------------------------------------------
[2025-11-30 00:12:47] 2025-11-30 05:11:21,105 | INFO     | 
[2025-11-30 00:12:47] 2025-11-30 05:11:21,105 | INFO     | executing command: ls -lF /tmp/boinchome/slots/14
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,116 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,117 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 00:12:47] 2025-11-30 05:11:21,117 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,117 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 00:12:47] 2025-11-30 05:11:21,117 | INFO     | job 6893857593 has completed (purged errors)
[2025-11-30 00:12:47] 2025-11-30 05:11:21,117 | INFO     | overall cleanup function is called
[2025-11-30 00:12:47] 2025-11-30 05:11:22,137 | INFO     | --- collectZombieJob: --- 10, [2786562]
[2025-11-30 00:12:47] 2025-11-30 05:11:22,138 | INFO     | zombie collector waiting for pid 2786562
[2025-11-30 00:12:47] 2025-11-30 05:11:22,138 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 00:12:47] 2025-11-30 05:11:22,138 | INFO     | collected zombie processes
[2025-11-30 00:12:47] 2025-11-30 05:11:22,138 | INFO     | will attempt to kill all subprocesses of pid=2786562
[2025-11-30 00:12:47] 2025-11-30 05:11:22,555 | INFO     | process IDs to be killed: [2786562] (in reverse order)
[2025-11-30 00:12:47] 2025-11-30 05:11:22,686 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 00:12:47] 2025-11-30 05:11:22,686 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 00:12:47] 2025-11-30 05:11:22,712 | INFO     | did not find any defunct processes belonging to 2786562
[2025-11-30 00:12:47] 2025-11-30 05:11:22,736 | INFO     | did not find any defunct processes belonging to 2786562
[2025-11-30 00:12:47] 2025-11-30 05:11:22,737 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 00:12:47] 2025-11-30 05:11:22,737 | INFO     | ready for new job
[2025-11-30 00:12:47] 2025-11-30 05:11:22,737 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 00:12:47] 2025-11-30 05:11:22,741 | INFO     | ***************************************
[2025-11-30 00:12:47] 2025-11-30 05:11:22,741 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 00:12:47] 2025-11-30 05:11:22,741 | INFO     | ***************************************
[2025-11-30 00:12:47] 2025-11-30 05:11:22,741 | INFO     | 
[2025-11-30 00:12:47] 2025-11-30 05:11:22,745 | INFO     | architecture information:
[2025-11-30 00:12:47] 2025-11-30 05:11:22,745 | INFO     | executing command: cat /etc/os-release
[2025-11-30 00:12:47] 2025-11-30 05:11:22,755 | INFO     | cat /etc/os-release:
[2025-11-30 00:12:47] NAME="CentOS Linux"
[2025-11-30 00:12:47] VERSION="7 (Core)"
[2025-11-30 00:12:47] ID="centos"
[2025-11-30 00:12:47] ID_LIKE="rhel fedora"
[2025-11-30 00:12:47] VERSION_ID="7"
[2025-11-30 00:12:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 00:12:47] ANSI_COLOR="0;31"
[2025-11-30 00:12:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 00:12:47] HOME_URL="https://www.centos.org/"
[2025-11-30 00:12:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 00:12:47] 
[2025-11-30 00:12:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 00:12:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 00:12:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 00:12:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 00:12:47] 
[2025-11-30 00:12:47] 2025-11-30 05:11:22,756 | INFO     | ***************************************
[2025-11-30 00:12:47] 2025-11-30 05:11:23,258 | INFO     | executing command: df -mP /tmp/boinchome/slots/14
[2025-11-30 00:12:47] 2025-11-30 05:11:23,270 | INFO     | sufficient remaining disk space (152194514944 B)
[2025-11-30 00:12:47] 2025-11-30 05:11:23,270 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 00:12:47] 2025-11-30 05:11:23,270 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 00:12:47] 2025-11-30 05:11:23,270 | INFO     | update_server=False
[2025-11-30 00:12:47] 2025-11-30 05:11:23,270 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 00:12:47] 2025-11-30 05:11:23,271 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 00:12:47] 2025-11-30 05:11:24,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 00:12:47] 2025-11-30 05:11:24,041 | INFO     | aborting loop
[2025-11-30 00:12:47] 2025-11-30 05:11:24,276 | INFO     | [job] retrieve thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:24,281 | INFO     | all data control threads have been joined
[2025-11-30 00:12:47] 2025-11-30 05:11:24,489 | INFO     | all payload control threads have been joined
[2025-11-30 00:12:47] 2025-11-30 05:11:24,593 | INFO     | all job control threads have been joined
[2025-11-30 00:12:47] 2025-11-30 05:11:24,659 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:24,936 | INFO     | [payload] validate_post thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:24,970 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:25,046 | INFO     | [job] job monitor thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:25,166 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:25,276 | INFO     | [data] copytool_out thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:25,286 | INFO     | [data] control thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:25,421 | INFO     | [payload] failed_post thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:25,492 | INFO     | [data] copytool_in thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:25,494 | INFO     | [payload] control thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:25,495 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:25,598 | INFO     | [job] control thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:25,721 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 00:12:47] 2025-11-30 05:11:25,772 | INFO     | [job] validate thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:25,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 00:12:47] 2025-11-30 05:11:26,724 | INFO     | [job] queue monitor thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:29,789 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 00:12:47] 2025-11-30 05:11:53,886 | INFO     | PID=2654176 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-30 00:12:47] 2025-11-30 05:11:53,886 | INFO     | .. there are 59 such processes running
[2025-11-30 00:12:47] 2025-11-30 05:11:53,886 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 00:12:47] 2025-11-30 05:11:53,886 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 00:12:47] 2025-11-30 05:11:53,886 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 00:12:47] 2025-11-30 05:11:54,361 | INFO     | [monitor] cgroup control has ended
[2025-11-30 00:12:47] 2025-11-30 05:11:54,708 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139685295904576)>', '<ExcThread(monitor, started 139684650923776)>']
[2025-11-30 00:12:47] 2025-11-30 05:11:54,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 00:12:47] 2025-11-30 05:11:54,891 | INFO     | [monitor] control thread has ended
[2025-11-30 00:12:47] 2025-11-30 05:11:59,732 | INFO     | all workflow threads have been joined
[2025-11-30 00:12:47] 2025-11-30 05:11:59,733 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 00:12:47] 2025-11-30 05:11:59,733 | INFO     | traces error code: 0
[2025-11-30 00:12:47] 2025-11-30 05:11:59,734 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 00:12:47] 2025-11-30 05:11:59,825 [wrapper] ==== pilot stdout END ====
[2025-11-30 00:12:47] 2025-11-30 05:11:59,827 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 00:12:47] 2025-11-30 05:11:59,830 [wrapper] pilotpid: 2654176
[2025-11-30 00:12:47] 2025-11-30 05:11:59,831 [wrapper] Pilot exit status: 0
[2025-11-30 00:12:47] 2025-11-30 05:11:59,842 [wrapper] pandaids: 6893857593 6893857593
[2025-11-30 00:12:47] 2025-11-30 05:11:59,936 [wrapper] cleanup supervisor_pilot  649580 2654177
[2025-11-30 00:12:47] 2025-11-30 05:11:59,938 [wrapper] Test setup, not cleaning
[2025-11-30 00:12:47] 2025-11-30 05:11:59,940 [wrapper] apfmon messages muted
[2025-11-30 00:12:47] 2025-11-30 05:11:59,942 [wrapper] ==== wrapper stdout END ====
[2025-11-30 00:12:47] 2025-11-30 05:11:59,944 [wrapper] ==== wrapper stderr END ====
[2025-11-30 00:12:47]  *** Error codes and diagnostics ***
[2025-11-30 00:12:47]     "exeErrorCode": 0,
[2025-11-30 00:12:47]     "exeErrorDiag": "",
[2025-11-30 00:12:47]     "pilotErrorCode": 0,
[2025-11-30 00:12:47]     "pilotErrorDiag": "",
[2025-11-30 00:12:47]  *** Listing of results directory ***
[2025-11-30 00:12:47] total 1733540
[2025-11-30 00:12:47] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 08:01 pilot3.tar.gz
[2025-11-30 00:12:47] -rwx------. 1 boincer umatlas     36292 Nov 20 08:08 runpilot2-wrapper.sh
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 08:08 queuedata.json
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas       100 Nov 29 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 00:12:47] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 29 00:03 run_atlas
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas       105 Nov 29 00:03 job.xml
[2025-11-30 00:12:47] -rw-r--r--. 3 boincer umatlas 412456539 Nov 29 00:03 EVNT.47493127._000493.pool.root.1
[2025-11-30 00:12:47] -rw-r--r--. 3 boincer umatlas 412456539 Nov 29 00:03 ATLAS.root_0
[2025-11-30 00:12:47] drwxrwx--x. 2 boincer umatlas      4096 Nov 29 00:03 shared
[2025-11-30 00:12:47] -rw-r--r--. 2 boincer umatlas    590101 Nov 29 00:03 input.tar.gz
[2025-11-30 00:12:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 00:03 start_atlas.sh
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas         0 Nov 29 00:03 boinc_lockfile
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas      2786 Nov 29 00:22 pandaJob.out
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas        57 Nov 29 00:22 setup.sh.local
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas    991826 Nov 29 00:23 agis_schedconf.cvmfs.json
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas       531 Nov 30 00:06 boinc_task_state.xml
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas 923301223 Nov 30 00:10 HITS.47523449._004930.pool.root.1
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas        96 Nov 30 00:11 pilot_heartbeat.json
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas      1067 Nov 30 00:11 memory_monitor_summary.json
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas   1516240 Nov 30 00:11 agis_ddmendpoints.agis.ALL.json
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas   2285411 Nov 30 00:11 log.47523449._004930.job.log.tgz.1
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas      8627 Nov 30 00:11 heartbeat.json
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas      4826 Nov 30 00:11 pilotlog.txt
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas   9213982 Nov 30 00:11 log.47523449._004930.job.log.1
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas       353 Nov 30 00:12 output.list
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas       620 Nov 30 00:12 runtime_log
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas  11520000 Nov 30 00:12 result.tar.gz
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas      9441 Nov 30 00:12 runtime_log.err
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas       790 Nov 30 00:12 AJPMDmQZJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlgGKDm3y7hsn.diag
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas      7176 Nov 30 00:12 init_data.xml
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas        28 Nov 30 00:12 wrapper_checkpoint.txt
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas      8192 Nov 30 00:12 boinc_mmap_file
[2025-11-30 00:12:47] -rw-r--r--. 1 boincer umatlas     23600 Nov 30 00:12 stderr.txt
[2025-11-30 00:12:47] HITS file was successfully produced:
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas 923301223 Nov 30 00:10 shared/HITS.pool.root.1
[2025-11-30 00:12:47]  *** Contents of shared directory: ***
[2025-11-30 00:12:47] total 1316312
[2025-11-30 00:12:47] -rw-r--r--. 3 boincer umatlas 412456539 Nov 29 00:03 ATLAS.root_0
[2025-11-30 00:12:47] -rw-r--r--. 2 boincer umatlas    590101 Nov 29 00:03 input.tar.gz
[2025-11-30 00:12:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 29 00:03 start_atlas.sh
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas 923301223 Nov 30 00:10 HITS.pool.root.1
[2025-11-30 00:12:47] -rw-------. 1 boincer umatlas  11520000 Nov 30 00:12 result.tar.gz
00:12:48 (2591929): run_atlas exited; CPU time 138418.688885
00:12:48 (2591929): called boinc_finish(0)

</stderr_txt>
]]>

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