Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
13:41:47 (2582031): wrapper (7.7.26015): starting
13:41:47 (2582031): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 13:41:47] Arguments: --nthreads 12
[2025-11-29 13:41:47] Threads: 12
[2025-11-29 13:41:47] Checking for CVMFS
[2025-11-29 13:41:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 13:41:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 13:41:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 13:41:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 13:41:47] 2.13.0.0 498242 15090 43328 153444 0 81 73364485 82903040 1302 130560 29 6532367 99.984 469420 215 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-29 13:41:47] CVMFS is ok
[2025-11-29 13:41:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 13:41:47] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-29 13:41:47] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-29 13:41:47] Further information can be found at the LHC@home message board.
[2025-11-29 13:41:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 13:41:47] Checking for apptainer binary...
[2025-11-29 13:41:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 13:41:47] Running /usr/bin/apptainer --version
[2025-11-29 13:41:47] apptainer version 1.4.4
[2025-11-29 13:41:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 13:41:47] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) torr
[2025-11-29 13:41:47] apptainer works
[2025-11-29 13:41:47] Set ATHENA_PROC_NUMBER=12
[2025-11-29 13:41:47] Set ATHENA_CORE_NUMBER=12
[2025-11-29 13:41:47] Starting ATLAS job with PandaID=6899792523
[2025-11-29 13:41:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 17:21:19]  *** The last 200 lines of the pilot log: ***
[2025-11-29 17:21:19] 2025-11-29 17:20:45,220 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 17:21:19] 2025-11-29 17:20:45,315 | INFO     | time since job start (13133s) is within the limit (172800.0s)
[2025-11-29 17:21:19] 2025-11-29 17:20:45,570 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-29 17:21:19] 2025-11-29 17:20:45,593 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 17:21:19] 2025-11-29 17:20:45,593 | INFO     | job 6899792523 has state=finished
[2025-11-29 17:21:19] 2025-11-29 17:20:45,593 | INFO     | preparing for final server update for job 6899792523 in state='finished'
[2025-11-29 17:21:19] 2025-11-29 17:20:45,593 | INFO     | this job has now completed (state=finished)
[2025-11-29 17:21:19] 2025-11-29 17:20:45,593 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-29 17:21:19] 2025-11-29 17:20:45,593 | INFO     | log transfer has been attempted: DONE
[2025-11-29 17:21:19] 2025-11-29 17:20:45,593 | INFO     | job 6899792523 has finished - writing final server update
[2025-11-29 17:21:19] 2025-11-29 17:20:45,593 | INFO     | total number of processed events: 1000 (read)
[2025-11-29 17:21:19] 2025-11-29 17:20:45,594 | INFO     | executing command: lscpu
[2025-11-29 17:21:19] 2025-11-29 17:20:45,602 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-29 17:21:19] 2025-11-29 17:20:46,699 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 17:21:19] 2025-11-29 17:20:46,699 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 2972.3374166666667
[2025-11-29 17:21:19] 2025-11-29 17:20:46,700 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6899792523/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 17:21:19] 2025-11-29 17:20:46,700 | INFO     | extracted standard info from prmon json
[2025-11-29 17:21:19] 2025-11-29 17:20:46,700 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 17:21:19] 2025-11-29 17:20:46,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 17:21:19] 2025-11-29 17:20:46,702 | INFO     | fitting pss+swap vs Time
[2025-11-29 17:21:19] 2025-11-29 17:20:46,702 | INFO     | sum of square deviations: 3081376013.7209253
[2025-11-29 17:21:19] 2025-11-29 17:20:46,702 | INFO     | sum of deviations: 2202354355090.6504
[2025-11-29 17:21:19] 2025-11-29 17:20:46,702 | INFO     | mean x: 1764430255.511628
[2025-11-29 17:21:19] 2025-11-29 17:20:46,702 | INFO     | mean y: 5493699.539534884
[2025-11-29 17:21:19] 2025-11-29 17:20:46,702 | INFO     | intersect: -1261087161067.8062
[2025-11-29 17:21:19] 2025-11-29 17:20:46,702 | INFO     | chi2: 81.03928030182811
[2025-11-29 17:21:19] 2025-11-29 17:20:46,703 | INFO     | sum of square deviations: 2871368414.8809633
[2025-11-29 17:21:19] 2025-11-29 17:20:46,703 | INFO     | sum of deviations: 2140517346295.1428
[2025-11-29 17:21:19] 2025-11-29 17:20:46,703 | INFO     | mean x: 1764430103.0238094
[2025-11-29 17:21:19] 2025-11-29 17:20:46,703 | INFO     | mean y: 5447329.371428572
[2025-11-29 17:21:19] 2025-11-29 17:20:46,703 | INFO     | intersect: -1315323237862.829
[2025-11-29 17:21:19] 2025-11-29 17:20:46,703 | INFO     | chi2: 100.61708027410009
[2025-11-29 17:21:19] 2025-11-29 17:20:46,703 | INFO     | current chi2=100.61708027410009 (change=-24.158407995918903 %)
[2025-11-29 17:21:19] 2025-11-29 17:20:46,703 | INFO     | right removable region: 209
[2025-11-29 17:21:19] 2025-11-29 17:20:46,703 | INFO     | sum of square deviations: 2871327300.9571433
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | sum of deviations: 2087177000519.3862
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | mean x: 1764430408.0142858
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | mean y: 5576988.871428572
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | intersect: -1282564531057.2751
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | chi2: 80.10312860197438
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | current chi2=80.10312860197438 (change=1.1551826427469152 %)
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | left removable region: 10
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | sum of square deviations: 2443322597.537692
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | sum of deviations: 1916249451640.754
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | mean x: 1764430377.5326633
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | mean y: 5553944.653266332
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | intersect: -1383802194902.1895
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | chi2: 100.08034827093891
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | current memory leak: 784.28 B/s (using 199 data points, chi2=100.08)
[2025-11-29 17:21:19] 2025-11-29 17:20:46,704 | INFO     | could have reported an average CPU frequency of 3541 MHz (11 samples)
[2025-11-29 17:21:19] 2025-11-29 17:20:46,705 | INFO     | ..............................
[2025-11-29 17:21:19] 2025-11-29 17:20:46,705 | INFO     | . Timing measurements:
[2025-11-29 17:21:19] 2025-11-29 17:20:46,705 | INFO     | . get job = 0 s
[2025-11-29 17:21:19] 2025-11-29 17:20:46,705 | INFO     | . initial setup = 1 s
[2025-11-29 17:21:19] 2025-11-29 17:20:46,705 | INFO     | . payload setup = 1 s
[2025-11-29 17:21:19] 2025-11-29 17:20:46,705 | INFO     | . stage-in = 0 s
[2025-11-29 17:21:19] 2025-11-29 17:20:46,705 | INFO     | . payload execution = 13113 s
[2025-11-29 17:21:19] 2025-11-29 17:20:46,705 | INFO     | . stage-out = 1 s
[2025-11-29 17:21:19] 2025-11-29 17:20:46,705 | INFO     | . log creation = 0 s
[2025-11-29 17:21:19] 2025-11-29 17:20:46,705 | INFO     | ..............................
[2025-11-29 17:21:19] 2025-11-29 17:20:46,729 | INFO     | 
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | job summary report
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | --------------------------------------------------
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | PanDA job id: 6899792523
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | task id: 47556161
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | errors: (none)
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | pilot state: finished 
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | transexitcode: 0
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | exeerrorcode: 0
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | exeerrordiag: 
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | exitcode: 0
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | exitmsg: OK
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | cpuconsumptiontime: 128309 s
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | nevents: 1000
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | neventsw: 0
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | pid: 2592347
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | pgrp: 2592347
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | corecount: 12
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | event service: False
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | sizes: {0: 2284323, 1: 2284585, 11: 2284613, 13119: 2315913, 13121: 2324977, 13122: 2325167}
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | --------------------------------------------------
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | 
[2025-11-29 17:21:19] 2025-11-29 17:20:46,730 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-11-29 17:21:19] 2025-11-29 17:20:46,735 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | job 6899792523 has completed (purged errors)
[2025-11-29 17:21:19] 2025-11-29 17:20:46,736 | INFO     | overall cleanup function is called
[2025-11-29 17:21:19] 2025-11-29 17:20:47,743 | INFO     | --- collectZombieJob: --- 10, [2592347]
[2025-11-29 17:21:19] 2025-11-29 17:20:47,743 | INFO     | zombie collector waiting for pid 2592347
[2025-11-29 17:21:19] 2025-11-29 17:20:47,743 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 17:21:19] 2025-11-29 17:20:47,743 | INFO     | collected zombie processes
[2025-11-29 17:21:19] 2025-11-29 17:20:47,743 | INFO     | will attempt to kill all subprocesses of pid=2592347
[2025-11-29 17:21:19] 2025-11-29 17:20:47,778 | INFO     | process IDs to be killed: [2592347] (in reverse order)
[2025-11-29 17:21:19] 2025-11-29 17:20:47,794 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 17:21:19] 2025-11-29 17:20:47,794 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 17:21:19] 2025-11-29 17:20:47,795 | INFO     | did not find any defunct processes belonging to 2592347
[2025-11-29 17:21:19] 2025-11-29 17:20:47,796 | INFO     | did not find any defunct processes belonging to 2592347
[2025-11-29 17:21:19] 2025-11-29 17:20:47,796 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 17:21:19] 2025-11-29 17:20:47,797 | INFO     | ready for new job
[2025-11-29 17:21:19] 2025-11-29 17:20:47,797 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 17:21:19] 2025-11-29 17:20:47,797 | INFO     | ***************************************
[2025-11-29 17:21:19] 2025-11-29 17:20:47,797 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 17:21:19] 2025-11-29 17:20:47,797 | INFO     | ***************************************
[2025-11-29 17:21:19] 2025-11-29 17:20:47,798 | INFO     | 
[2025-11-29 17:21:19] 2025-11-29 17:20:47,798 | INFO     | architecture information:
[2025-11-29 17:21:19] 2025-11-29 17:20:47,798 | INFO     | executing command: cat /etc/os-release
[2025-11-29 17:21:19] 2025-11-29 17:20:47,802 | INFO     | cat /etc/os-release:
[2025-11-29 17:21:19] NAME="CentOS Linux"
[2025-11-29 17:21:19] VERSION="7 (Core)"
[2025-11-29 17:21:19] ID="centos"
[2025-11-29 17:21:19] ID_LIKE="rhel fedora"
[2025-11-29 17:21:19] VERSION_ID="7"
[2025-11-29 17:21:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 17:21:19] ANSI_COLOR="0;31"
[2025-11-29 17:21:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 17:21:19] HOME_URL="https://www.centos.org/"
[2025-11-29 17:21:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 17:21:19] 
[2025-11-29 17:21:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 17:21:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 17:21:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 17:21:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 17:21:19] 
[2025-11-29 17:21:19] 2025-11-29 17:20:47,802 | INFO     | ***************************************
[2025-11-29 17:21:19] 2025-11-29 17:20:48,305 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-11-29 17:21:19] 2025-11-29 17:20:48,310 | INFO     | sufficient remaining disk space (408508432384 B)
[2025-11-29 17:21:19] 2025-11-29 17:20:48,310 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 17:21:19] 2025-11-29 17:20:48,310 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 17:21:19] 2025-11-29 17:20:48,310 | INFO     | update_server=False
[2025-11-29 17:21:19] 2025-11-29 17:20:48,310 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 17:21:19] 2025-11-29 17:20:48,310 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 17:21:19] 2025-11-29 17:20:48,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 17:21:19] 2025-11-29 17:20:48,608 | WARNING  | process 2592347 can no longer be monitored (due to stat problems) - aborting
[2025-11-29 17:21:19] 2025-11-29 17:20:48,629 | INFO     | using path: /var/lib/boinc-client/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 17:21:19] 2025-11-29 17:20:48,654 | INFO     | number of running child processes to parent process 2592347: 1
[2025-11-29 17:21:19] 2025-11-29 17:20:48,654 | INFO     | maximum number of monitored processes: 17
[2025-11-29 17:21:19] 2025-11-29 17:20:48,654 | INFO     | aborting job monitoring since job object (job id=6899792523) has expired
[2025-11-29 17:21:19] 2025-11-29 17:20:48,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 17:21:19] 2025-11-29 17:20:48,654 | INFO     | will abort loop
[2025-11-29 17:21:19] 2025-11-29 17:20:49,020 | INFO     | all data control threads have been joined
[2025-11-29 17:21:19] 2025-11-29 17:20:49,316 | INFO     | [job] retrieve thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:49,316 | INFO     | [job] queue monitor thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:49,319 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:49,348 | INFO     | [job] validate thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:49,445 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:49,660 | INFO     | [job] job monitor thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:49,664 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:49,740 | INFO     | all payload control threads have been joined
[2025-11-29 17:21:19] 2025-11-29 17:20:49,833 | INFO     | all job control threads have been joined
[2025-11-29 17:21:19] 2025-11-29 17:20:50,011 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:50,025 | INFO     | [data] control thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:50,316 | INFO     | [data] copytool_out thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:50,438 | INFO     | [payload] validate_post thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:50,539 | INFO     | [payload] failed_post thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:50,662 | INFO     | [data] copytool_in thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:50,745 | INFO     | [payload] control thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:50,834 | INFO     | [job] control thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:20:51,597 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 17:21:19] 2025-11-29 17:20:55,603 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 17:21:19] 2025-11-29 17:21:13,529 | INFO     | [monitor] cgroup control has ended
[2025-11-29 17:21:19] 2025-11-29 17:21:14,045 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131820365600576)>', '<ExcThread(monitor, started 131819643066112)>']
[2025-11-29 17:21:19] 2025-11-29 17:21:18,429 | INFO     | PID=2585768 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 17:21:19] 2025-11-29 17:21:18,430 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 17:21:19] 2025-11-29 17:21:18,430 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 17:21:19] 2025-11-29 17:21:18,430 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 17:21:19] 2025-11-29 17:21:18,430 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 17:21:19] 2025-11-29 17:21:18,430 | INFO     | [monitor] control thread has ended
[2025-11-29 17:21:19] 2025-11-29 17:21:19,078 | INFO     | all workflow threads have been joined
[2025-11-29 17:21:19] 2025-11-29 17:21:19,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 17:21:19] 2025-11-29 17:21:19,087 | INFO     | traces error code: 0
[2025-11-29 17:21:19] 2025-11-29 17:21:19,087 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 17:21:19] 2025-11-29 17:21:19,142 [wrapper] ==== pilot stdout END ====
[2025-11-29 17:21:19] 2025-11-29 17:21:19,143 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 17:21:19] 2025-11-29 17:21:19,143 [wrapper] pilotpid: 2585768
[2025-11-29 17:21:19] 2025-11-29 17:21:19,144 [wrapper] Pilot exit status: 0
[2025-11-29 17:21:19] 2025-11-29 17:21:19,148 [wrapper] pandaids: 6899792523
[2025-11-29 17:21:19] 2025-11-29 17:21:19,157 [wrapper] cleanup supervisor_pilot 2679729 2585769
[2025-11-29 17:21:19] 2025-11-29 17:21:19,158 [wrapper] Test setup, not cleaning
[2025-11-29 17:21:19] 2025-11-29 17:21:19,159 [wrapper] apfmon messages muted
[2025-11-29 17:21:19] 2025-11-29 17:21:19,159 [wrapper] ==== wrapper stdout END ====
[2025-11-29 17:21:19] 2025-11-29 17:21:19,160 [wrapper] ==== wrapper stderr END ====
[2025-11-29 17:21:19]  *** Error codes and diagnostics ***
[2025-11-29 17:21:19]     "exeErrorCode": 0,
[2025-11-29 17:21:19]     "exeErrorDiag": "",
[2025-11-29 17:21:19]     "pilotErrorCode": 0,
[2025-11-29 17:21:19]     "pilotErrorDiag": "",
[2025-11-29 17:21:19]  *** Listing of results directory ***
[2025-11-29 17:21:19] total 1325936
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc    576529 Nov 27 08:46 pilot3.tar.gz
[2025-11-29 17:21:19] -rwx------ 1 boinc boinc     36292 Nov 27 08:49 runpilot2-wrapper.sh
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc      5112 Nov 27 08:53 queuedata.json
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc       100 Nov 29 13:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 17:21:19] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 13:41 run_atlas
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc       105 Nov 29 13:41 job.xml
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc      9907 Nov 29 13:41 init_data.xml
[2025-11-29 17:21:19] -rw-r--r-- 2 boinc boinc 409573502 Nov 29 13:41 EVNT.47483658._002808.pool.root.1
[2025-11-29 17:21:19] -rw-r--r-- 2 boinc boinc     15847 Nov 29 13:41 start_atlas.sh
[2025-11-29 17:21:19] drwxrwx--x 2 boinc boinc      4096 Nov 29 13:41 shared
[2025-11-29 17:21:19] -rw-r--r-- 2 boinc boinc    590109 Nov 29 13:41 input.tar.gz
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc         0 Nov 29 13:41 boinc_lockfile
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc      2787 Nov 29 13:41 pandaJob.out
[2025-11-29 17:21:19] -rw------- 1 boinc boinc    991826 Nov 29 13:41 agis_schedconf.cvmfs.json
[2025-11-29 17:21:19] drwx------ 5 boinc boinc      4096 Nov 29 13:41 pilot3
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc       532 Nov 29 17:17 boinc_task_state.xml
[2025-11-29 17:21:19] -rw------- 1 boinc boinc 936584666 Nov 29 17:20 HITS.47556161._007908.pool.root.1
[2025-11-29 17:21:19] -rw------- 1 boinc boinc      1071 Nov 29 17:20 memory_monitor_summary.json
[2025-11-29 17:21:19] -rw------- 1 boinc boinc   1516240 Nov 29 17:20 agis_ddmendpoints.agis.ALL.json
[2025-11-29 17:21:19] -rw------- 1 boinc boinc   1955972 Nov 29 17:20 log.47556161._007908.job.log.tgz.1
[2025-11-29 17:21:19] -rw------- 1 boinc boinc      8643 Nov 29 17:20 heartbeat.json
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc      8192 Nov 29 17:20 boinc_mmap_file
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc        29 Nov 29 17:20 wrapper_checkpoint.txt
[2025-11-29 17:21:19] -rw------- 1 boinc boinc        95 Nov 29 17:21 pilot_heartbeat.json
[2025-11-29 17:21:19] -rw------- 1 boinc boinc      5285 Nov 29 17:21 pilotlog.txt
[2025-11-29 17:21:19] -rw------- 1 boinc boinc   1883886 Nov 29 17:21 log.47556161._007908.job.log.1
[2025-11-29 17:21:19] -rw------- 1 boinc boinc       353 Nov 29 17:21 output.list
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc       620 Nov 29 17:21 runtime_log
[2025-11-29 17:21:19] -rw------- 1 boinc boinc   3860480 Nov 29 17:21 result.tar.gz
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc      9048 Nov 29 17:21 runtime_log.err
[2025-11-29 17:21:19] -rw------- 1 boinc boinc       662 Nov 29 17:21 h6vNDmzrmi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMrNKDmJSChNn.diag
[2025-11-29 17:21:19] -rw-r--r-- 1 boinc boinc     22171 Nov 29 17:21 stderr.txt
[2025-11-29 17:21:19] HITS file was successfully produced:
[2025-11-29 17:21:19] -rw------- 1 boinc boinc 936584666 Nov 29 17:20 shared/HITS.pool.root.1
[2025-11-29 17:21:19]  *** Contents of shared directory: ***
[2025-11-29 17:21:19] total 1318984
[2025-11-29 17:21:19] -rw-r--r-- 2 boinc boinc 409573502 Nov 29 13:41 ATLAS.root_0
[2025-11-29 17:21:19] -rw-r--r-- 2 boinc boinc     15847 Nov 29 13:41 start_atlas.sh
[2025-11-29 17:21:19] -rw-r--r-- 2 boinc boinc    590109 Nov 29 13:41 input.tar.gz
[2025-11-29 17:21:19] -rw------- 1 boinc boinc 936584666 Nov 29 17:20 HITS.pool.root.1
[2025-11-29 17:21:19] -rw------- 1 boinc boinc   3860480 Nov 29 17:21 result.tar.gz
17:21:20 (2582031): run_atlas exited; CPU time 127558.254489
17:21:20 (2582031): called boinc_finish(0)

</stderr_txt>
]]>

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