Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:40:32 (1662974): wrapper (7.7.26015): starting
08:40:32 (1662974): wrapper: running run_atlas (--nthreads 4)
[2025-12-02 08:40:32] Arguments: --nthreads 4
[2025-12-02 08:40:32] Threads: 4
[2025-12-02 08:40:32] Checking for CVMFS
[2025-12-02 08:40:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 08:40:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 08:40:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 08:40:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 08:40:32] 2.9.2.0 57880 11083 110484 153548 3 81 36847479 36864001 0 130560 1 4423821 99.981 409576 654 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-02 08:40:32] CVMFS is ok
[2025-12-02 08:40:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 08:40:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 08:40:32] Further information can be found at the LHC@home message board.
[2025-12-02 08:40:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 08:40:32] Checking for apptainer binary...
[2025-12-02 08:40:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 08:40:32] Running /usr/bin/apptainer --version
[2025-12-02 08:40:32] apptainer version 1.4.1-1.1
[2025-12-02 08:40:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 08:40:32] magicA254
[2025-12-02 08:40:32] apptainer works
[2025-12-02 08:40:32] Set ATHENA_PROC_NUMBER=4
[2025-12-02 08:40:32] Set ATHENA_CORE_NUMBER=4
[2025-12-02 08:40:32] Starting ATLAS job with PandaID=6899597626
[2025-12-02 08:40:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 15:31:36]  *** The last 200 lines of the pilot log: ***
[2025-12-02 15:31:36] 2025-12-02 14:31:02,835 | INFO     | time since job start (24622s) is within the limit (172800.0s)
[2025-12-02 15:31:36] 2025-12-02 14:31:03,099 | INFO     | monitor loop #1873: job 0:6899597626 is in state 'finished'
[2025-12-02 15:31:36] 2025-12-02 14:31:03,099 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:31:36] 2025-12-02 14:31:04,753 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 15:31:36] 2025-12-02 14:31:04,755 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3448.7950625
[2025-12-02 15:31:36] 2025-12-02 14:31:04,756 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6899597626/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 15:31:36] 2025-12-02 14:31:04,757 | INFO     | extracted standard info from prmon json
[2025-12-02 15:31:36] 2025-12-02 14:31:04,757 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 15:31:36] 2025-12-02 14:31:04,757 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 15:31:36] 2025-12-02 14:31:04,759 | INFO     | fitting pss+swap vs Time
[2025-12-02 15:31:36] 2025-12-02 14:31:04,760 | INFO     | sum of square deviations: 20446541505.0
[2025-12-02 15:31:36] 2025-12-02 14:31:04,761 | INFO     | sum of deviations: 231751512137.0001
[2025-12-02 15:31:36] 2025-12-02 14:31:04,761 | INFO     | mean x: 1764673554.5
[2025-12-02 15:31:36] 2025-12-02 14:31:04,761 | INFO     | mean y: 2398394.2574257427
[2025-12-02 15:31:36] 2025-12-02 14:31:04,761 | INFO     | intersect: -19999310187.291256
[2025-12-02 15:31:36] 2025-12-02 14:31:04,762 | INFO     | chi2: 4.634950046431655
[2025-12-02 15:31:36] 2025-12-02 14:31:04,762 | INFO     | sum of square deviations: 19696741400.0
[2025-12-02 15:31:36] 2025-12-02 14:31:04,764 | INFO     | sum of deviations: 311095203264.99994
[2025-12-02 15:31:36] 2025-12-02 14:31:04,764 | INFO     | mean x: 1764673402.0
[2025-12-02 15:31:36] 2025-12-02 14:31:04,764 | INFO     | mean y: 2414480.022556391
[2025-12-02 15:31:36] 2025-12-02 14:31:04,764 | INFO     | intersect: -27869273508.505787
[2025-12-02 15:31:36] 2025-12-02 14:31:04,765 | INFO     | chi2: 2.6944721077084073
[2025-12-02 15:31:36] 2025-12-02 14:31:04,765 | INFO     | current chi2=2.6944721077084073 (change=41.86621040753564 %)
[2025-12-02 15:31:36] 2025-12-02 14:31:04,765 | INFO     | sum of square deviations: 18965499782.5
[2025-12-02 15:31:36] 2025-12-02 14:31:04,767 | INFO     | sum of deviations: 307482511906.50006
[2025-12-02 15:31:36] 2025-12-02 14:31:04,767 | INFO     | mean x: 1764673249.5
[2025-12-02 15:31:36] 2025-12-02 14:31:04,767 | INFO     | mean y: 2413721.1446700506
[2025-12-02 15:31:36] 2025-12-02 14:31:04,767 | INFO     | intersect: -28607755779.958797
[2025-12-02 15:31:36] 2025-12-02 14:31:04,767 | INFO     | chi2: 2.6806886910760195
[2025-12-02 15:31:36] 2025-12-02 14:31:04,768 | INFO     | current chi2=2.6806886910760195 (change=0.5115442313526233 %)
[2025-12-02 15:31:36] 2025-12-02 14:31:04,768 | INFO     | right removable region: 393
[2025-12-02 15:31:36] 2025-12-02 14:31:04,768 | INFO     | sum of square deviations: 19696741400.0
[2025-12-02 15:31:36] 2025-12-02 14:31:04,769 | INFO     | sum of deviations: 135356457885.99997
[2025-12-02 15:31:36] 2025-12-02 14:31:04,769 | INFO     | mean x: 1764673707.0
[2025-12-02 15:31:36] 2025-12-02 14:31:04,769 | INFO     | mean y: 2417969.4360902254
[2025-12-02 15:31:36] 2025-12-02 14:31:04,769 | INFO     | intersect: -12124460149.808392
[2025-12-02 15:31:36] 2025-12-02 14:31:04,770 | INFO     | chi2: 2.420266850117495
[2025-12-02 15:31:36] 2025-12-02 14:31:04,770 | INFO     | current chi2=2.420266850117495 (change=47.78224520497682 %)
[2025-12-02 15:31:36] 2025-12-02 14:31:04,770 | INFO     | sum of square deviations: 18965499782.5
[2025-12-02 15:31:36] 2025-12-02 14:31:04,771 | INFO     | sum of deviations: 99180725116.49994
[2025-12-02 15:31:36] 2025-12-02 14:31:04,771 | INFO     | mean x: 1764673859.5
[2025-12-02 15:31:36] 2025-12-02 14:31:04,771 | INFO     | mean y: 2425479.33248731
[2025-12-02 15:31:36] 2025-12-02 14:31:04,771 | INFO     | intersect: -9225996391.249586
[2025-12-02 15:31:36] 2025-12-02 14:31:04,771 | INFO     | chi2: 2.0304540316917388
[2025-12-02 15:31:36] 2025-12-02 14:31:04,772 | INFO     | current chi2=2.0304540316917388 (change=16.106191695631917 %)
[2025-12-02 15:31:36] 2025-12-02 14:31:04,772 | INFO     | left removable region: 20
[2025-12-02 15:31:36] 2025-12-02 14:31:04,772 | INFO     | sum of square deviations: 16091695202.0
[2025-12-02 15:31:36] 2025-12-02 14:31:04,773 | INFO     | sum of deviations: 153645426036.00003
[2025-12-02 15:31:36] 2025-12-02 14:31:04,773 | INFO     | mean x: 1764673829.0
[2025-12-02 15:31:36] 2025-12-02 14:31:04,773 | INFO     | mean y: 2446708.4879356567
[2025-12-02 15:31:36] 2025-12-02 14:31:04,773 | INFO     | intersect: -16846869592.108276
[2025-12-02 15:31:36] 2025-12-02 14:31:04,773 | INFO     | chi2: 0.04732043236361984
[2025-12-02 15:31:36] 2025-12-02 14:31:04,773 | INFO     | current memory leak: 9.55 B/s (using 373 data points, chi2=0.05)
[2025-12-02 15:31:36] 2025-12-02 14:31:04,774 | INFO     | could have reported an average CPU frequency of 3814 MHz (17 samples)
[2025-12-02 15:31:36] 2025-12-02 14:31:04,774 | INFO     | ..............................
[2025-12-02 15:31:36] 2025-12-02 14:31:04,774 | INFO     | . Timing measurements:
[2025-12-02 15:31:36] 2025-12-02 14:31:04,774 | INFO     | . get job = 0 s
[2025-12-02 15:31:36] 2025-12-02 14:31:04,774 | INFO     | . initial setup = 1 s
[2025-12-02 15:31:36] 2025-12-02 14:31:04,774 | INFO     | . payload setup = 4 s
[2025-12-02 15:31:36] 2025-12-02 14:31:04,774 | INFO     | . stage-in = 0 s
[2025-12-02 15:31:36] 2025-12-02 14:31:04,774 | INFO     | . payload execution = 24595 s
[2025-12-02 15:31:36] 2025-12-02 14:31:04,774 | INFO     | . stage-out = 1 s
[2025-12-02 15:31:36] 2025-12-02 14:31:04,774 | INFO     | . log creation = 0 s
[2025-12-02 15:31:36] 2025-12-02 14:31:04,774 | INFO     | ..............................
[2025-12-02 15:31:36] 2025-12-02 14:31:04,813 | INFO     | 
[2025-12-02 15:31:36] 2025-12-02 14:31:04,813 | INFO     | job summary report
[2025-12-02 15:31:36] 2025-12-02 14:31:04,813 | INFO     | --------------------------------------------------
[2025-12-02 15:31:36] 2025-12-02 14:31:04,813 | INFO     | PanDA job id: 6899597626
[2025-12-02 15:31:36] 2025-12-02 14:31:04,813 | INFO     | task id: 47556173
[2025-12-02 15:31:36] 2025-12-02 14:31:04,813 | INFO     | errors: (none)
[2025-12-02 15:31:36] 2025-12-02 14:31:04,813 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 15:31:36] 2025-12-02 14:31:04,813 | INFO     | pilot state: finished 
[2025-12-02 15:31:36] 2025-12-02 14:31:04,813 | INFO     | transexitcode: 0
[2025-12-02 15:31:36] 2025-12-02 14:31:04,813 | INFO     | exeerrorcode: 0
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | exeerrordiag: 
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | exitcode: 0
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | exitmsg: OK
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | cpuconsumptiontime: 96256 s
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | nevents: 1000
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | neventsw: 0
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | pid: 1673341
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | pgrp: 1673341
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | corecount: 4
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | event service: False
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | sizes: {0: 2284319, 3: 2284581, 11: 2284609, 24602: 2321478, 24603: 2321477, 24604: 2330533, 24605: 2330717, 24610: 2331027}
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | --------------------------------------------------
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | 
[2025-12-02 15:31:36] 2025-12-02 14:31:04,814 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,832 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,833 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 15:31:36] 2025-12-02 14:31:04,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,833 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 15:31:36] 2025-12-02 14:31:04,833 | INFO     | job 6899597626 has completed (purged errors)
[2025-12-02 15:31:36] 2025-12-02 14:31:04,833 | INFO     | overall cleanup function is called
[2025-12-02 15:31:36] 2025-12-02 14:31:05,842 | INFO     | --- collectZombieJob: --- 10, [1673341]
[2025-12-02 15:31:36] 2025-12-02 14:31:05,843 | INFO     | zombie collector waiting for pid 1673341
[2025-12-02 15:31:36] 2025-12-02 14:31:05,843 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 15:31:36] 2025-12-02 14:31:05,843 | INFO     | collected zombie processes
[2025-12-02 15:31:36] 2025-12-02 14:31:05,843 | INFO     | will attempt to kill all subprocesses of pid=1673341
[2025-12-02 15:31:36] 2025-12-02 14:31:05,892 | INFO     | process IDs to be killed: [1673341] (in reverse order)
[2025-12-02 15:31:36] 2025-12-02 14:31:05,924 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 15:31:36] 2025-12-02 14:31:05,925 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 15:31:36] 2025-12-02 14:31:05,926 | INFO     | did not find any defunct processes belonging to 1673341
[2025-12-02 15:31:36] 2025-12-02 14:31:05,928 | INFO     | did not find any defunct processes belonging to 1673341
[2025-12-02 15:31:36] 2025-12-02 14:31:05,928 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 15:31:36] 2025-12-02 14:31:05,929 | INFO     | ready for new job
[2025-12-02 15:31:36] 2025-12-02 14:31:05,929 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 15:31:36] 2025-12-02 14:31:05,930 | INFO     | ***************************************
[2025-12-02 15:31:36] 2025-12-02 14:31:05,930 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 15:31:36] 2025-12-02 14:31:05,930 | INFO     | ***************************************
[2025-12-02 15:31:36] 2025-12-02 14:31:05,930 | INFO     | 
[2025-12-02 15:31:36] 2025-12-02 14:31:05,930 | INFO     | architecture information:
[2025-12-02 15:31:36] 2025-12-02 14:31:05,931 | INFO     | executing command: cat /etc/os-release
[2025-12-02 15:31:36] 2025-12-02 14:31:05,944 | INFO     | cat /etc/os-release:
[2025-12-02 15:31:36] NAME="CentOS Linux"
[2025-12-02 15:31:36] VERSION="7 (Core)"
[2025-12-02 15:31:36] ID="centos"
[2025-12-02 15:31:36] ID_LIKE="rhel fedora"
[2025-12-02 15:31:36] VERSION_ID="7"
[2025-12-02 15:31:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 15:31:36] ANSI_COLOR="0;31"
[2025-12-02 15:31:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 15:31:36] HOME_URL="https://www.centos.org/"
[2025-12-02 15:31:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 15:31:36] 
[2025-12-02 15:31:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 15:31:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 15:31:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 15:31:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 15:31:36] 
[2025-12-02 15:31:36] 2025-12-02 14:31:05,944 | INFO     | ***************************************
[2025-12-02 15:31:36] 2025-12-02 14:31:06,448 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-02 15:31:36] 2025-12-02 14:31:06,464 | INFO     | sufficient remaining disk space (337257693184 B)
[2025-12-02 15:31:36] 2025-12-02 14:31:06,464 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 15:31:36] 2025-12-02 14:31:06,464 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 15:31:36] 2025-12-02 14:31:06,464 | INFO     | update_server=False
[2025-12-02 15:31:36] 2025-12-02 14:31:06,464 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 15:31:36] 2025-12-02 14:31:06,465 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:31:36] 2025-12-02 14:31:06,465 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 15:31:36] 2025-12-02 14:31:06,556 | INFO     | all job control threads have been joined
[2025-12-02 15:31:36] 2025-12-02 14:31:06,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:31:36] 2025-12-02 14:31:06,608 | INFO     | aborting loop
[2025-12-02 15:31:36] 2025-12-02 14:31:06,832 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 15:31:36] 2025-12-02 14:31:07,381 | INFO     | all payload control threads have been joined
[2025-12-02 15:31:36] 2025-12-02 14:31:07,415 | INFO     | all data control threads have been joined
[2025-12-02 15:31:36] 2025-12-02 14:31:07,470 | INFO     | [job] retrieve thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:07,470 | INFO     | [job] queue monitor thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:07,562 | INFO     | [job] control thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:07,613 | INFO     | [job] job monitor thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:07,773 | INFO     | [payload] failed_post thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:08,113 | INFO     | [payload] validate_post thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:08,168 | INFO     | [data] copytool_in thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:08,191 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:08,387 | INFO     | [payload] control thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:08,421 | INFO     | [data] control thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:08,421 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:08,577 | INFO     | [job] validate thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:08,796 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:08,836 | INFO     | [data] copytool_out thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:10,111 | INFO     | [monitor] cgroup control has ended
[2025-12-02 15:31:36] 2025-12-02 14:31:10,472 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:16,596 | INFO     | job.realtimelogging is not enabled
[2025-12-02 15:31:36] 2025-12-02 14:31:17,601 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 15:31:36] 2025-12-02 14:31:18,208 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140496203802432)>', '<ExcThread(monitor, started 140495334393600)>']
[2025-12-02 15:31:36] 2025-12-02 14:31:23,234 | INFO     | all workflow threads have been joined
[2025-12-02 15:31:36] 2025-12-02 14:31:23,234 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 15:31:36] 2025-12-02 14:31:23,234 | INFO     | traces error code: 0
[2025-12-02 15:31:36] 2025-12-02 14:31:23,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 15:31:36] 2025-12-02 14:31:35,950 | INFO     | PID=1666772 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 15:31:36] 2025-12-02 14:31:35,950 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 15:31:36] 2025-12-02 14:31:35,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 15:31:36] 2025-12-02 14:31:35,950 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 15:31:36] 2025-12-02 14:31:35,950 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 15:31:36] 2025-12-02 14:31:35,950 | INFO     | [monitor] control thread has ended
[2025-12-02 15:31:36] 2025-12-02 14:31:36,026 [wrapper] ==== pilot stdout END ====
[2025-12-02 15:31:36] 2025-12-02 14:31:36,030 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 15:31:36] 2025-12-02 14:31:36,034 [wrapper] pilotpid: 1666772
[2025-12-02 15:31:36] 2025-12-02 14:31:36,038 [wrapper] Pilot exit status: 0
[2025-12-02 15:31:36] 2025-12-02 14:31:36,049 [wrapper] pandaids: 6899597626
[2025-12-02 15:31:36] 2025-12-02 14:31:36,071 [wrapper] cleanup supervisor_pilot 1719649 1666773
[2025-12-02 15:31:36] 2025-12-02 14:31:36,074 [wrapper] Test setup, not cleaning
[2025-12-02 15:31:36] 2025-12-02 14:31:36,078 [wrapper] apfmon messages muted
[2025-12-02 15:31:36] 2025-12-02 14:31:36,082 [wrapper] ==== wrapper stdout END ====
[2025-12-02 15:31:36] 2025-12-02 14:31:36,085 [wrapper] ==== wrapper stderr END ====
[2025-12-02 15:31:36]  *** Error codes and diagnostics ***
[2025-12-02 15:31:36]     "exeErrorCode": 0,
[2025-12-02 15:31:36]     "exeErrorDiag": "",
[2025-12-02 15:31:36]     "pilotErrorCode": 0,
[2025-12-02 15:31:36]     "pilotErrorDiag": "",
[2025-12-02 15:31:36]  *** Listing of results directory ***
[2025-12-02 15:31:36] total 1309904
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-02 15:31:36] -rwx------ 1 boinc boinc     36292 Nov 27 09:49 runpilot2-wrapper.sh
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc      5112 Nov 27 09:53 queuedata.json
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc       100 Dec  2 08:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 15:31:36] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 08:40 run_atlas
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc       105 Dec  2 08:40 job.xml
[2025-12-02 15:31:36] -rw-r--r-- 2 boinc boinc 409752391 Dec  2 08:40 EVNT.47483658._003415.pool.root.1
[2025-12-02 15:31:36] -rw-r--r-- 2 boinc boinc    590105 Dec  2 08:40 input.tar.gz
[2025-12-02 15:31:36] -rw-r--r-- 2 boinc boinc     15847 Dec  2 08:40 start_atlas.sh
[2025-12-02 15:31:36] drwxrwx--x 2 boinc boinc      4096 Dec  2 08:40 shared
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc         0 Dec  2 08:40 boinc_setup_complete
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc      6380 Dec  2 08:40 init_data.xml
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc         0 Dec  2 08:40 boinc_lockfile
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc      2787 Dec  2 08:40 pandaJob.out
[2025-12-02 15:31:36] -rw------- 1 boinc boinc    990249 Dec  2 08:40 agis_schedconf.cvmfs.json
[2025-12-02 15:31:36] drwx------ 5 boinc boinc      4096 Dec  2 08:40 pilot3
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc       531 Dec  2 15:25 boinc_task_state.xml
[2025-12-02 15:31:36] -rw------- 1 boinc boinc 918214795 Dec  2 15:30 HITS.47556173._003716.pool.root.1
[2025-12-02 15:31:36] -rw------- 1 boinc boinc        95 Dec  2 15:30 pilot_heartbeat.json
[2025-12-02 15:31:36] -rw------- 1 boinc boinc      1032 Dec  2 15:30 memory_monitor_summary.json
[2025-12-02 15:31:36] -rw------- 1 boinc boinc   1516240 Dec  2 15:30 agis_ddmendpoints.agis.ALL.json
[2025-12-02 15:31:36] -rw------- 1 boinc boinc   1255286 Dec  2 15:30 log.47556173._003716.job.log.tgz.1
[2025-12-02 15:31:36] -rw------- 1 boinc boinc      8586 Dec  2 15:31 heartbeat.json
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc      8192 Dec  2 15:31 boinc_mmap_file
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc        28 Dec  2 15:31 wrapper_checkpoint.txt
[2025-12-02 15:31:36] -rw------- 1 boinc boinc       747 Dec  2 15:31 pilotlog.txt
[2025-12-02 15:31:36] -rw------- 1 boinc boinc   3473481 Dec  2 15:31 log.47556173._003716.job.log.1
[2025-12-02 15:31:36] -rw------- 1 boinc boinc       353 Dec  2 15:31 output.list
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc       620 Dec  2 15:31 runtime_log
[2025-12-02 15:31:36] -rw------- 1 boinc boinc   4751360 Dec  2 15:31 result.tar.gz
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc      8913 Dec  2 15:31 runtime_log.err
[2025-12-02 15:31:36] -rw------- 1 boinc boinc       668 Dec  2 15:31 QEQLDmJsmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzhKKDm9TWDSn.diag
[2025-12-02 15:31:36] -rw-r--r-- 1 boinc boinc     21258 Dec  2 15:31 stderr.txt
[2025-12-02 15:31:36] HITS file was successfully produced:
[2025-12-02 15:31:36] -rw------- 1 boinc boinc 918214795 Dec  2 15:30 shared/HITS.pool.root.1
[2025-12-02 15:31:36]  *** Contents of shared directory: ***
[2025-12-02 15:31:36] total 1302092
[2025-12-02 15:31:36] -rw-r--r-- 2 boinc boinc 409752391 Dec  2 08:40 ATLAS.root_0
[2025-12-02 15:31:36] -rw-r--r-- 2 boinc boinc    590105 Dec  2 08:40 input.tar.gz
[2025-12-02 15:31:36] -rw-r--r-- 2 boinc boinc     15847 Dec  2 08:40 start_atlas.sh
[2025-12-02 15:31:36] -rw------- 1 boinc boinc 918214795 Dec  2 15:30 HITS.pool.root.1
[2025-12-02 15:31:36] -rw------- 1 boinc boinc   4751360 Dec  2 15:31 result.tar.gz
15:31:37 (1662974): run_atlas exited; CPU time 96224.810652
15:31:37 (1662974): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN