Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:07:47 (2837): wrapper (7.7.26015): starting
11:07:47 (2837): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 11:07:47] Arguments: --nthreads 8
[2025-11-30 11:07:47] Threads: 8
[2025-11-30 11:07:47] Checking for CVMFS
[2025-11-30 11:07:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 11:07:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 11:07:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 11:07:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 11:07:50] 2.11.2.0 29171 290969 143412 153475 1 286 21683436 25165824 2504 130560 10 147748718 99.877 84198245 3500 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 11:07:50] CVMFS is ok
[2025-11-30 11:07:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 11:07:50] Checking for apptainer binary...
[2025-11-30 11:07:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 11:07:50] Running /usr/bin/apptainer --version
[2025-11-30 11:07:50] apptainer version 1.3.2-1.el7
[2025-11-30 11:07:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 11:08:12] cg-vwn473.simple-grid.lan
[2025-11-30 11:08:12] apptainer works
[2025-11-30 11:08:12] Set ATHENA_PROC_NUMBER=8
[2025-11-30 11:08:12] Set ATHENA_CORE_NUMBER=8
[2025-11-30 11:08:12] Starting ATLAS job with PandaID=6899597625
[2025-11-30 11:08:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 08:58:53]  *** The last 200 lines of the pilot log: ***
[2025-12-01 08:58:53] 2025-12-01 07:58:06,374 | INFO     | monitor loop #5362: job 0:6899597625 is in state 'finished'
[2025-12-01 08:58:53] 2025-12-01 07:58:06,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 08:58:53] 2025-12-01 07:58:07,010 | INFO     | PID=6660 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 08:58:53] 2025-12-01 07:58:07,010 | INFO     | .. there are 9 such processes running
[2025-12-01 08:58:53] 2025-12-01 07:58:08,012 | INFO     | time since job start (78352s) is within the limit (172800.0s)
[2025-12-01 08:58:53] 2025-12-01 07:58:08,885 | INFO     | monitor loop #5363: job 0:6899597625 is in state 'finished'
[2025-12-01 08:58:53] 2025-12-01 07:58:08,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 08:58:53] 2025-12-01 07:58:10,020 | INFO     | time since job start (78354s) is within the limit (172800.0s)
[2025-12-01 08:58:53] 2025-12-01 07:58:11,401 | INFO     | monitor loop #5364: job 0:6899597625 is in state 'finished'
[2025-12-01 08:58:53] 2025-12-01 07:58:11,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 08:58:53] 2025-12-01 07:58:12,029 | INFO     | time since job start (78356s) is within the limit (172800.0s)
[2025-12-01 08:58:53] 2025-12-01 07:58:13,907 | INFO     | monitor loop #5365: job 0:6899597625 is in state 'finished'
[2025-12-01 08:58:53] 2025-12-01 07:58:13,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 08:58:53] 2025-12-01 07:58:14,036 | INFO     | time since job start (78358s) is within the limit (172800.0s)
[2025-12-01 08:58:53] 2025-12-01 07:58:15,423 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 08:58:53] 2025-12-01 07:58:15,424 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-01 08:58:53] 2025-12-01 07:58:15,426 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6899597625/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 08:58:53] 2025-12-01 07:58:15,426 | INFO     | extracted standard info from prmon json
[2025-12-01 08:58:53] 2025-12-01 07:58:15,426 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 08:58:53] 2025-12-01 07:58:15,426 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 08:58:53] 2025-12-01 07:58:15,450 | INFO     | fitting pss+swap vs Time
[2025-12-01 08:58:53] 2025-12-01 07:58:15,452 | INFO     | sum of square deviations: 638174183668.8647
[2025-12-01 08:58:53] 2025-12-01 07:58:15,510 | INFO     | sum of deviations: 2025546200959.2817
[2025-12-01 08:58:53] 2025-12-01 07:58:15,510 | INFO     | mean x: 1764536835.5298743
[2025-12-01 08:58:53] 2025-12-01 07:58:15,510 | INFO     | mean y: 2826379.5188679243
[2025-12-01 08:58:53] 2025-12-01 07:58:15,511 | INFO     | intersect: -5597761947.499391
[2025-12-01 08:58:53] 2025-12-01 07:58:15,520 | INFO     | chi2: 27.340252680471394
[2025-12-01 08:58:53] 2025-12-01 07:58:15,522 | INFO     | sum of square deviations: 630678479873.5396
[2025-12-01 08:58:53] 2025-12-01 07:58:15,609 | INFO     | sum of deviations: 2451870674712.6304
[2025-12-01 08:58:53] 2025-12-01 07:58:15,609 | INFO     | mean x: 1764536683.0339384
[2025-12-01 08:58:53] 2025-12-01 07:58:15,609 | INFO     | mean y: 2835052.264404104
[2025-12-01 08:58:53] 2025-12-01 07:58:15,609 | INFO     | intersect: -6857103705.203775
[2025-12-01 08:58:53] 2025-12-01 07:58:15,611 | INFO     | chi2: 23.948853104418205
[2025-12-01 08:58:53] 2025-12-01 07:58:15,611 | INFO     | current chi2=23.948853104418205 (change=12.404419284960007 %)
[2025-12-01 08:58:53] 2025-12-01 07:58:15,611 | INFO     | right removable region: 1266
[2025-12-01 08:58:53] 2025-12-01 07:58:15,612 | INFO     | sum of square deviations: 630677680773.5404
[2025-12-01 08:58:53] 2025-12-01 07:58:15,669 | INFO     | sum of deviations: 1489961794890.6038
[2025-12-01 08:58:53] 2025-12-01 07:58:15,669 | INFO     | mean x: 1764536988.0339384
[2025-12-01 08:58:53] 2025-12-01 07:58:15,669 | INFO     | mean y: 2837274.4277821626
[2025-12-01 08:58:53] 2025-12-01 07:58:15,669 | INFO     | intersect: -4165841557.867766
[2025-12-01 08:58:53] 2025-12-01 07:58:15,671 | INFO     | chi2: 22.564207124012672
[2025-12-01 08:58:53] 2025-12-01 07:58:15,671 | INFO     | current chi2=22.564207124012672 (change=17.468915200883124 %)
[2025-12-01 08:58:53] 2025-12-01 07:58:15,671 | INFO     | left removable region: 10
[2025-12-01 08:58:53] 2025-12-01 07:58:15,673 | INFO     | sum of square deviations: 614393444183.6805
[2025-12-01 08:58:53] 2025-12-01 07:58:15,727 | INFO     | sum of deviations: 1584058874427.818
[2025-12-01 08:58:53] 2025-12-01 07:58:15,728 | INFO     | mean x: 1764536957.5429935
[2025-12-01 08:58:53] 2025-12-01 07:58:15,728 | INFO     | mean y: 2856645.2627388537
[2025-12-01 08:58:53] 2025-12-01 07:58:15,728 | INFO     | intersect: -4546557827.356864
[2025-12-01 08:58:53] 2025-12-01 07:58:15,729 | INFO     | chi2: 15.494044651583932
[2025-12-01 08:58:53] 2025-12-01 07:58:15,729 | INFO     | current memory leak: 2.58 B/s (using 1256 data points, chi2=15.49)
[2025-12-01 08:58:53] 2025-12-01 07:58:15,730 | INFO     | could have reported an average CPU frequency of 2249 MHz (43 samples)
[2025-12-01 08:58:53] 2025-12-01 07:58:15,731 | INFO     | ..............................
[2025-12-01 08:58:53] 2025-12-01 07:58:15,731 | INFO     | . Timing measurements:
[2025-12-01 08:58:53] 2025-12-01 07:58:15,731 | INFO     | . get job = 0 s
[2025-12-01 08:58:53] 2025-12-01 07:58:15,731 | INFO     | . initial setup = 11 s
[2025-12-01 08:58:53] 2025-12-01 07:58:15,731 | INFO     | . payload setup = 166 s
[2025-12-01 08:58:53] 2025-12-01 07:58:15,731 | INFO     | . stage-in = 0 s
[2025-12-01 08:58:53] 2025-12-01 07:58:15,731 | INFO     | . payload execution = 77746 s
[2025-12-01 08:58:53] 2025-12-01 07:58:15,731 | INFO     | . stage-out = 3 s
[2025-12-01 08:58:53] 2025-12-01 07:58:15,731 | INFO     | . log creation = 1 s
[2025-12-01 08:58:53] 2025-12-01 07:58:15,731 | INFO     | ..............................
[2025-12-01 08:58:53] 2025-12-01 07:58:15,843 | INFO     | 
[2025-12-01 08:58:53] 2025-12-01 07:58:15,844 | INFO     | job summary report
[2025-12-01 08:58:53] 2025-12-01 07:58:15,844 | INFO     | --------------------------------------------------
[2025-12-01 08:58:53] 2025-12-01 07:58:15,844 | INFO     | PanDA job id: 6899597625
[2025-12-01 08:58:53] 2025-12-01 07:58:15,844 | INFO     | task id: 47556173
[2025-12-01 08:58:53] 2025-12-01 07:58:15,844 | INFO     | errors: (none)
[2025-12-01 08:58:53] 2025-12-01 07:58:15,844 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 08:58:53] 2025-12-01 07:58:15,844 | INFO     | pilot state: finished 
[2025-12-01 08:58:53] 2025-12-01 07:58:15,844 | INFO     | transexitcode: 0
[2025-12-01 08:58:53] 2025-12-01 07:58:15,844 | INFO     | exeerrorcode: 0
[2025-12-01 08:58:53] 2025-12-01 07:58:15,844 | INFO     | exeerrordiag: 
[2025-12-01 08:58:53] 2025-12-01 07:58:15,844 | INFO     | exitcode: 0
[2025-12-01 08:58:53] 2025-12-01 07:58:15,844 | INFO     | exitmsg: OK
[2025-12-01 08:58:53] 2025-12-01 07:58:15,845 | INFO     | cpuconsumptiontime: 289128 s
[2025-12-01 08:58:53] 2025-12-01 07:58:15,845 | INFO     | nevents: 1000
[2025-12-01 08:58:53] 2025-12-01 07:58:15,845 | INFO     | neventsw: 0
[2025-12-01 08:58:53] 2025-12-01 07:58:15,845 | INFO     | pid: 13215
[2025-12-01 08:58:53] 2025-12-01 07:58:15,845 | INFO     | pgrp: 13215
[2025-12-01 08:58:53] 2025-12-01 07:58:15,845 | INFO     | corecount: 8
[2025-12-01 08:58:53] 2025-12-01 07:58:15,845 | INFO     | event service: False
[2025-12-01 08:58:53] 2025-12-01 07:58:15,845 | INFO     | sizes: {0: 2283488, 1: 2284345, 2: 2284373, 12: 2284373, 23: 2284401, 34: 2284429, 44: 2284585, 55: 2284613, 66: 2284641, 77: 2284669, 87: 2284725, 92: 2285295, 98
[2025-12-01 08:58:53] 2025-12-01 07:58:15,845 | INFO     | --------------------------------------------------
[2025-12-01 08:58:53] 2025-12-01 07:58:15,845 | INFO     | 
[2025-12-01 08:58:53] 2025-12-01 07:58:15,845 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-12-01 08:58:53] 2025-12-01 07:58:16,045 | INFO     | time since job start (78360s) is within the limit (172800.0s)
[2025-12-01 08:58:53] 2025-12-01 07:58:16,273 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,273 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,273 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,273 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,273 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,273 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,273 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,273 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,273 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,274 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,274 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,274 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,274 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,274 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,274 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,274 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,274 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,274 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 08:58:53] 2025-12-01 07:58:16,274 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,274 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 08:58:53] 2025-12-01 07:58:16,275 | INFO     | job 6899597625 has completed (purged errors)
[2025-12-01 08:58:53] 2025-12-01 07:58:16,275 | INFO     | overall cleanup function is called
[2025-12-01 08:58:53] 2025-12-01 07:58:17,295 | INFO     | --- collectZombieJob: --- 10, [13215]
[2025-12-01 08:58:53] 2025-12-01 07:58:17,295 | INFO     | zombie collector waiting for pid 13215
[2025-12-01 08:58:53] 2025-12-01 07:58:17,296 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 08:58:53] 2025-12-01 07:58:17,296 | INFO     | collected zombie processes
[2025-12-01 08:58:53] 2025-12-01 07:58:17,296 | INFO     | will attempt to kill all subprocesses of pid=13215
[2025-12-01 08:58:53] 2025-12-01 07:58:17,406 | INFO     | process IDs to be killed: [13215] (in reverse order)
[2025-12-01 08:58:53] 2025-12-01 07:58:18,305 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 08:58:53] 2025-12-01 07:58:18,305 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 08:58:53] 2025-12-01 07:58:18,308 | INFO     | did not find any defunct processes belonging to 13215
[2025-12-01 08:58:53] 2025-12-01 07:58:18,310 | INFO     | did not find any defunct processes belonging to 13215
[2025-12-01 08:58:53] 2025-12-01 07:58:18,380 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 08:58:53] 2025-12-01 07:58:18,381 | INFO     | ready for new job
[2025-12-01 08:58:53] 2025-12-01 07:58:18,381 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 08:58:53] 2025-12-01 07:58:18,386 | INFO     | ***************************************
[2025-12-01 08:58:53] 2025-12-01 07:58:18,386 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 08:58:53] 2025-12-01 07:58:18,386 | INFO     | ***************************************
[2025-12-01 08:58:53] 2025-12-01 07:58:18,386 | INFO     | 
[2025-12-01 08:58:53] 2025-12-01 07:58:18,387 | INFO     | pilot is running in a VM
[2025-12-01 08:58:53] 2025-12-01 07:58:18,387 | INFO     | architecture information:
[2025-12-01 08:58:53] 2025-12-01 07:58:18,402 | INFO     | executing command: cat /etc/os-release
[2025-12-01 08:58:53] 2025-12-01 07:58:18,706 | INFO     | cat /etc/os-release:
[2025-12-01 08:58:53] NAME="CentOS Linux"
[2025-12-01 08:58:53] VERSION="7 (Core)"
[2025-12-01 08:58:53] ID="centos"
[2025-12-01 08:58:53] ID_LIKE="rhel fedora"
[2025-12-01 08:58:53] VERSION_ID="7"
[2025-12-01 08:58:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 08:58:53] ANSI_COLOR="0;31"
[2025-12-01 08:58:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 08:58:53] HOME_URL="https://www.centos.org/"
[2025-12-01 08:58:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 08:58:53] 
[2025-12-01 08:58:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 08:58:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 08:58:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 08:58:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 08:58:53] 
[2025-12-01 08:58:53] 2025-12-01 07:58:18,706 | INFO     | ***************************************
[2025-12-01 08:58:53] 2025-12-01 07:58:19,209 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-12-01 08:58:53] 2025-12-01 07:58:19,362 | INFO     | sufficient remaining disk space (488290385920 B)
[2025-12-01 08:58:53] 2025-12-01 07:58:19,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 08:58:53] 2025-12-01 07:58:19,362 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 08:58:53] 2025-12-01 07:58:19,363 | INFO     | update_server=False
[2025-12-01 08:58:53] 2025-12-01 07:58:19,363 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 08:58:53] 2025-12-01 07:58:19,651 | INFO     | all payload control threads have been joined
[2025-12-01 08:58:53] 2025-12-01 07:58:19,764 | INFO     | all data control threads have been joined
[2025-12-01 08:58:53] 2025-12-01 07:58:19,928 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 08:58:53] 2025-12-01 07:58:19,928 | INFO     | aborting loop
[2025-12-01 08:58:53] 2025-12-01 07:58:20,220 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 08:58:53] 2025-12-01 07:58:20,368 | INFO     | [job] retrieve thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:20,481 | INFO     | [job] validate thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:20,570 | INFO     | [data] copytool_in thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:20,657 | INFO     | [payload] control thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:20,722 | INFO     | all job control threads have been joined
[2025-12-01 08:58:53] 2025-12-01 07:58:20,770 | INFO     | [data] control thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:20,861 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 08:58:53] 2025-12-01 07:58:20,934 | INFO     | [job] job monitor thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:20,966 | INFO     | [payload] validate_post thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:21,118 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:21,178 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:21,191 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 08:58:53] 2025-12-01 07:58:21,555 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:21,679 | INFO     | [payload] failed_post thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:21,728 | INFO     | [job] control thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:21,866 | INFO     | [job] queue monitor thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:22,227 | INFO     | [data] copytool_out thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:25,200 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:29,612 | INFO     | job.realtimelogging is not enabled
[2025-12-01 08:58:53] 2025-12-01 07:58:30,618 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 08:58:53] 2025-12-01 07:58:32,432 | INFO     | [monitor] cgroup control has ended
[2025-12-01 08:58:53] 2025-12-01 07:58:33,509 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139910877964096)>', '<ExcThread(monitor, started 139910296102656)>']
[2025-12-01 08:58:53] 2025-12-01 07:58:38,535 | INFO     | all workflow threads have been joined
[2025-12-01 08:58:53] 2025-12-01 07:58:38,535 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 08:58:53] 2025-12-01 07:58:38,536 | INFO     | traces error code: 0
[2025-12-01 08:58:53] 2025-12-01 07:58:38,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 08:58:53] 2025-12-01 07:58:49,277 | INFO     | PID=6660 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 08:58:53] 2025-12-01 07:58:49,278 | INFO     | .. there are 9 such processes running
[2025-12-01 08:58:53] 2025-12-01 07:58:49,278 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 08:58:53] 2025-12-01 07:58:49,279 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 08:58:53] 2025-12-01 07:58:49,279 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 08:58:53] 2025-12-01 07:58:49,279 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 08:58:53] 2025-12-01 07:58:49,279 | INFO     | [monitor] control thread has ended
[2025-12-01 08:58:53] 2025-12-01 07:58:49,652 [wrapper] ==== pilot stdout END ====
[2025-12-01 08:58:53] 2025-12-01 07:58:49,776 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 08:58:53] 2025-12-01 07:58:49,900 [wrapper] pilotpid: 6660
[2025-12-01 08:58:53] 2025-12-01 07:58:49,968 [wrapper] Pilot exit status: 0
[2025-12-01 08:58:53] 2025-12-01 07:58:50,169 [wrapper] pandaids: 6899597625
[2025-12-01 08:58:53] 2025-12-01 07:58:50,699 [wrapper] cleanup supervisor_pilot 27093 6661
[2025-12-01 08:58:53] 2025-12-01 07:58:50,732 [wrapper] Test setup, not cleaning
[2025-12-01 08:58:53] 2025-12-01 07:58:50,796 [wrapper] apfmon messages muted
[2025-12-01 08:58:53] 2025-12-01 07:58:50,841 [wrapper] ==== wrapper stdout END ====
[2025-12-01 08:58:53] 2025-12-01 07:58:50,939 [wrapper] ==== wrapper stderr END ====
[2025-12-01 08:58:53]  *** Error codes and diagnostics ***
[2025-12-01 08:58:53]     "exeErrorCode": 0,
[2025-12-01 08:58:53]     "exeErrorDiag": "",
[2025-12-01 08:58:53]     "pilotErrorCode": 0,
[2025-12-01 08:58:53]     "pilotErrorDiag": "",
[2025-12-01 08:58:53]  *** Listing of results directory ***
[2025-12-01 08:58:53] total 1328276
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-01 08:58:53] -rwx------. 1 boinc boinc     36292 Nov 27 09:47 runpilot2-wrapper.sh
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc      5112 Nov 27 09:49 queuedata.json
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc       100 Nov 30 11:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 08:58:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 11:07 run_atlas
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc       105 Nov 30 11:07 job.xml
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc      6393 Nov 30 11:07 init_data.xml
[2025-12-01 08:58:53] -rw-r--r--. 2 boinc boinc 409752391 Nov 30 11:07 EVNT.47483658._003415.pool.root.1
[2025-12-01 08:58:53] -rw-r--r--. 2 boinc boinc     15847 Nov 30 11:07 start_atlas.sh
[2025-12-01 08:58:53] drwxrwx--x. 2 boinc boinc        68 Nov 30 11:07 shared
[2025-12-01 08:58:53] -rw-r--r--. 2 boinc boinc    590109 Nov 30 11:07 input.tar.gz
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc         0 Nov 30 11:07 boinc_lockfile
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc      2787 Nov 30 11:08 pandaJob.out
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc    991780 Nov 30 11:12 agis_schedconf.cvmfs.json
[2025-12-01 08:58:53] drwx------. 5 boinc boinc      4096 Nov 30 11:12 pilot3
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc       533 Dec  1 08:23 boinc_task_state.xml
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc 920758565 Dec  1 08:53 HITS.47556173._003715.pool.root.1
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc      1031 Dec  1 08:54 memory_monitor_summary.json
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc   1516240 Dec  1 08:54 agis_ddmendpoints.agis.ALL.json
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc   2385923 Dec  1 08:54 log.47556173._003715.job.log.tgz.1
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc      7944 Dec  1 08:58 heartbeat.json
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc      8192 Dec  1 08:58 boinc_mmap_file
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc        29 Dec  1 08:58 wrapper_checkpoint.txt
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc       819 Dec  1 08:58 pilotlog.txt
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc        95 Dec  1 08:58 pilot_heartbeat.json
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc  10482249 Dec  1 08:58 log.47556173._003715.job.log.1
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc       353 Dec  1 08:58 output.list
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc       620 Dec  1 08:58 runtime_log
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc  12892160 Dec  1 08:58 result.tar.gz
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc      8833 Dec  1 08:58 runtime_log.err
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc       662 Dec  1 08:58 IgkMDm3pmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAdKKDmT2Grom.diag
[2025-12-01 08:58:53] -rw-r--r--. 1 boinc boinc     21485 Dec  1 08:58 stderr.txt
[2025-12-01 08:58:53] HITS file was successfully produced:
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc 920758565 Dec  1 08:53 shared/HITS.pool.root.1
[2025-12-01 08:58:53]  *** Contents of shared directory: ***
[2025-12-01 08:58:53] total 1312520
[2025-12-01 08:58:53] -rw-r--r--. 2 boinc boinc 409752391 Nov 30 11:07 ATLAS.root_0
[2025-12-01 08:58:53] -rw-r--r--. 2 boinc boinc     15847 Nov 30 11:07 start_atlas.sh
[2025-12-01 08:58:53] -rw-r--r--. 2 boinc boinc    590109 Nov 30 11:07 input.tar.gz
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc 920758565 Dec  1 08:53 HITS.pool.root.1
[2025-12-01 08:58:53] -rw-------. 1 boinc boinc  12892160 Dec  1 08:58 result.tar.gz
08:58:55 (2837): run_atlas exited; CPU time 289637.003008
08:58:55 (2837): called boinc_finish(0)

</stderr_txt>
]]>

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