Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:24:51 (2739): wrapper (7.7.26015): starting
00:24:51 (2739): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 00:24:51] Arguments: --nthreads 8
[2025-12-01 00:24:51] Threads: 8
[2025-12-01 00:24:51] Checking for CVMFS
[2025-12-01 00:24:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 00:24:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 00:24:52] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 00:24:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 00:24:53] 2.11.2.0 27863 291806 139336 153498 1 151 25159127 25165824 2653 130560 9 148341214 99.878 84305981 3654 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 00:24:53] CVMFS is ok
[2025-12-01 00:24:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 00:24:53] Checking for apptainer binary...
[2025-12-01 00:24:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 00:24:53] Running /usr/bin/apptainer --version
[2025-12-01 00:24:54] apptainer version 1.3.2-1.el7
[2025-12-01 00:24:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 00:25:03] cg-vwn495.simple-grid.lan
[2025-12-01 00:25:03] apptainer works
[2025-12-01 00:25:03] Set ATHENA_PROC_NUMBER=8
[2025-12-01 00:25:03] Set ATHENA_CORE_NUMBER=8
[2025-12-01 00:25:03] Starting ATLAS job with PandaID=6899576188
[2025-12-01 00:25:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 21:38:22]  *** The last 200 lines of the pilot log: ***
[2025-12-01 21:38:22] 2025-12-01 20:37:20,889 | INFO     | time since job start (76281s) is within the limit (172800.0s)
[2025-12-01 21:38:22] 2025-12-01 20:37:22,370 | INFO     | monitor loop #5052: job 0:6899576188 is in state 'finished'
[2025-12-01 21:38:22] 2025-12-01 20:37:22,371 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 21:38:22] 2025-12-01 20:37:22,894 | INFO     | time since job start (76283s) is within the limit (172800.0s)
[2025-12-01 21:38:22] 2025-12-01 20:37:24,131 | INFO     | PID=6519 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 21:38:22] 2025-12-01 20:37:24,131 | INFO     | .. there are 9 such processes running
[2025-12-01 21:38:22] 2025-12-01 20:37:24,876 | INFO     | monitor loop #5053: job 0:6899576188 is in state 'finished'
[2025-12-01 21:38:22] 2025-12-01 20:37:24,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 21:38:22] 2025-12-01 20:37:25,137 | INFO     | time since job start (76286s) is within the limit (172800.0s)
[2025-12-01 21:38:22] 2025-12-01 20:37:27,147 | INFO     | time since job start (76288s) is within the limit (172800.0s)
[2025-12-01 21:38:22] 2025-12-01 20:37:27,382 | INFO     | monitor loop #5054: job 0:6899576188 is in state 'finished'
[2025-12-01 21:38:22] 2025-12-01 20:37:27,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 21:38:22] 2025-12-01 20:37:29,154 | INFO     | time since job start (76290s) is within the limit (172800.0s)
[2025-12-01 21:38:22] 2025-12-01 20:37:29,887 | INFO     | monitor loop #5055: job 0:6899576188 is in state 'finished'
[2025-12-01 21:38:22] 2025-12-01 20:37:29,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 21:38:22] 2025-12-01 20:37:31,161 | INFO     | time since job start (76292s) is within the limit (172800.0s)
[2025-12-01 21:38:22] 2025-12-01 20:37:31,645 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 21:38:22] 2025-12-01 20:37:31,646 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-12-01 21:38:22] 2025-12-01 20:37:31,648 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6899576188/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 21:38:22] 2025-12-01 20:37:31,649 | INFO     | extracted standard info from prmon json
[2025-12-01 21:38:22] 2025-12-01 20:37:31,649 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 21:38:22] 2025-12-01 20:37:31,649 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 21:38:22] 2025-12-01 20:37:31,678 | INFO     | fitting pss+swap vs Time
[2025-12-01 21:38:22] 2025-12-01 20:37:31,680 | INFO     | sum of square deviations: 602728335073.018
[2025-12-01 21:38:22] 2025-12-01 20:37:31,752 | INFO     | sum of deviations: 1538474682207.8013
[2025-12-01 21:38:22] 2025-12-01 20:37:31,753 | INFO     | mean x: 1764583269.5488782
[2025-12-01 21:38:22] 2025-12-01 20:37:31,753 | INFO     | mean y: 2859659.749198718
[2025-12-01 21:38:22] 2025-12-01 20:37:31,753 | INFO     | intersect: -4501270189.264007
[2025-12-01 21:38:22] 2025-12-01 20:37:31,755 | INFO     | chi2: 15.024189574808778
[2025-12-01 21:38:22] 2025-12-01 20:37:31,756 | INFO     | sum of square deviations: 595513380422.4958
[2025-12-01 21:38:22] 2025-12-01 20:37:31,814 | INFO     | sum of deviations: 1958428992269.0156
[2025-12-01 21:38:22] 2025-12-01 20:37:31,814 | INFO     | mean x: 1764583117.0530972
[2025-12-01 21:38:22] 2025-12-01 20:37:31,814 | INFO     | mean y: 2868535.423974256
[2025-12-01 21:38:22] 2025-12-01 20:37:31,814 | INFO     | intersect: -5800209698.105287
[2025-12-01 21:38:22] 2025-12-01 20:37:31,816 | INFO     | chi2: 11.700086463733927
[2025-12-01 21:38:22] 2025-12-01 20:37:31,816 | INFO     | current chi2=11.700086463733927 (change=22.125007771789644 %)
[2025-12-01 21:38:22] 2025-12-01 20:37:31,816 | INFO     | right removable region: 1242
[2025-12-01 21:38:22] 2025-12-01 20:37:31,818 | INFO     | sum of square deviations: 595512657817.6007
[2025-12-01 21:38:22] 2025-12-01 20:37:31,862 | INFO     | sum of deviations: 1195125864973.9426
[2025-12-01 21:38:22] 2025-12-01 20:37:31,862 | INFO     | mean x: 1764583422.0522928
[2025-12-01 21:38:22] 2025-12-01 20:37:31,862 | INFO     | mean y: 2866908.739340306
[2025-12-01 21:38:22] 2025-12-01 20:37:31,862 | INFO     | intersect: -3538450409.9008617
[2025-12-01 21:38:22] 2025-12-01 20:37:31,864 | INFO     | chi2: 12.714897450219333
[2025-12-01 21:38:22] 2025-12-01 20:37:31,864 | INFO     | current chi2=12.714897450219333 (change=15.370493783315013 %)
[2025-12-01 21:38:22] 2025-12-01 20:37:31,864 | INFO     | left removable region: 10
[2025-12-01 21:38:22] 2025-12-01 20:37:31,865 | INFO     | sum of square deviations: 579842517809.9083
[2025-12-01 21:38:22] 2025-12-01 20:37:31,917 | INFO     | sum of deviations: 1621232570637.4229
[2025-12-01 21:38:22] 2025-12-01 20:37:31,917 | INFO     | mean x: 1764583391.5576298
[2025-12-01 21:38:22] 2025-12-01 20:37:31,917 | INFO     | mean y: 2879582.4448051946
[2025-12-01 21:38:22] 2025-12-01 20:37:31,917 | INFO     | intersect: -4930873945.675986
[2025-12-01 21:38:22] 2025-12-01 20:37:31,919 | INFO     | chi2: 8.565452962658863
[2025-12-01 21:38:22] 2025-12-01 20:37:31,919 | INFO     | current memory leak: 2.80 B/s (using 1232 data points, chi2=8.57)
[2025-12-01 21:38:22] 2025-12-01 20:37:31,920 | INFO     | could have reported an average CPU frequency of 2249 MHz (42 samples)
[2025-12-01 21:38:22] 2025-12-01 20:37:31,921 | INFO     | ..............................
[2025-12-01 21:38:22] 2025-12-01 20:37:31,921 | INFO     | . Timing measurements:
[2025-12-01 21:38:22] 2025-12-01 20:37:31,921 | INFO     | . get job = 0 s
[2025-12-01 21:38:22] 2025-12-01 20:37:31,921 | INFO     | . initial setup = 2 s
[2025-12-01 21:38:22] 2025-12-01 20:37:31,921 | INFO     | . payload setup = 9 s
[2025-12-01 21:38:22] 2025-12-01 20:37:31,921 | INFO     | . stage-in = 0 s
[2025-12-01 21:38:22] 2025-12-01 20:37:31,922 | INFO     | . payload execution = 76124 s
[2025-12-01 21:38:22] 2025-12-01 20:37:31,922 | INFO     | . stage-out = 4 s
[2025-12-01 21:38:22] 2025-12-01 20:37:31,922 | INFO     | . log creation = 2 s
[2025-12-01 21:38:22] 2025-12-01 20:37:31,922 | INFO     | ..............................
[2025-12-01 21:38:22] 2025-12-01 20:37:32,051 | INFO     | 
[2025-12-01 21:38:22] 2025-12-01 20:37:32,051 | INFO     | job summary report
[2025-12-01 21:38:22] 2025-12-01 20:37:32,051 | INFO     | --------------------------------------------------
[2025-12-01 21:38:22] 2025-12-01 20:37:32,051 | INFO     | PanDA job id: 6899576188
[2025-12-01 21:38:22] 2025-12-01 20:37:32,052 | INFO     | task id: 47556173
[2025-12-01 21:38:22] 2025-12-01 20:37:32,052 | INFO     | errors: (none)
[2025-12-01 21:38:22] 2025-12-01 20:37:32,052 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 21:38:22] 2025-12-01 20:37:32,052 | INFO     | pilot state: finished 
[2025-12-01 21:38:22] 2025-12-01 20:37:32,052 | INFO     | transexitcode: 0
[2025-12-01 21:38:22] 2025-12-01 20:37:32,052 | INFO     | exeerrorcode: 0
[2025-12-01 21:38:22] 2025-12-01 20:37:32,052 | INFO     | exeerrordiag: 
[2025-12-01 21:38:22] 2025-12-01 20:37:32,052 | INFO     | exitcode: 0
[2025-12-01 21:38:22] 2025-12-01 20:37:32,052 | INFO     | exitmsg: OK
[2025-12-01 21:38:22] 2025-12-01 20:37:32,053 | INFO     | cpuconsumptiontime: 288675 s
[2025-12-01 21:38:22] 2025-12-01 20:37:32,053 | INFO     | nevents: 1000
[2025-12-01 21:38:22] 2025-12-01 20:37:32,053 | INFO     | neventsw: 0
[2025-12-01 21:38:22] 2025-12-01 20:37:32,053 | INFO     | pid: 13013
[2025-12-01 21:38:22] 2025-12-01 20:37:32,053 | INFO     | pgrp: 13013
[2025-12-01 21:38:22] 2025-12-01 20:37:32,053 | INFO     | corecount: 8
[2025-12-01 21:38:22] 2025-12-01 20:37:32,053 | INFO     | event service: False
[2025-12-01 21:38:22] 2025-12-01 20:37:32,053 | INFO     | sizes: {0: 2284090, 1: 2284345, 12: 2284345, 23: 2284373, 33: 2284401, 38: 2284719, 44: 2284875, 76138: 2340472, 76144: 2349468, 76147: 2349524, 76243: 2349770}
[2025-12-01 21:38:22] 2025-12-01 20:37:32,053 | INFO     | --------------------------------------------------
[2025-12-01 21:38:22] 2025-12-01 20:37:32,054 | INFO     | 
[2025-12-01 21:38:22] 2025-12-01 20:37:32,054 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-12-01 21:38:22] 2025-12-01 20:37:32,694 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,694 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,694 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,694 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,695 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,695 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,695 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,695 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,695 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,695 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,695 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,695 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,695 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,695 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,695 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,695 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,696 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,696 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 21:38:22] 2025-12-01 20:37:32,696 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,696 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 21:38:22] 2025-12-01 20:37:32,696 | INFO     | job 6899576188 has completed (purged errors)
[2025-12-01 21:38:22] 2025-12-01 20:37:32,696 | INFO     | overall cleanup function is called
[2025-12-01 21:38:22] 2025-12-01 20:37:33,713 | INFO     | --- collectZombieJob: --- 10, [13013]
[2025-12-01 21:38:22] 2025-12-01 20:37:33,714 | INFO     | zombie collector waiting for pid 13013
[2025-12-01 21:38:22] 2025-12-01 20:37:33,714 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 21:38:22] 2025-12-01 20:37:33,714 | INFO     | collected zombie processes
[2025-12-01 21:38:22] 2025-12-01 20:37:33,714 | INFO     | will attempt to kill all subprocesses of pid=13013
[2025-12-01 21:38:22] 2025-12-01 20:37:33,836 | INFO     | process IDs to be killed: [13013] (in reverse order)
[2025-12-01 21:38:22] 2025-12-01 20:37:34,410 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 21:38:22] 2025-12-01 20:37:34,410 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 21:38:22] 2025-12-01 20:37:34,413 | INFO     | did not find any defunct processes belonging to 13013
[2025-12-01 21:38:22] 2025-12-01 20:37:34,421 | INFO     | did not find any defunct processes belonging to 13013
[2025-12-01 21:38:22] 2025-12-01 20:37:34,493 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 21:38:22] 2025-12-01 20:37:34,493 | INFO     | ready for new job
[2025-12-01 21:38:22] 2025-12-01 20:37:34,493 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 21:38:22] 2025-12-01 20:37:34,497 | INFO     | ***************************************
[2025-12-01 21:38:22] 2025-12-01 20:37:34,498 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 21:38:22] 2025-12-01 20:37:34,498 | INFO     | ***************************************
[2025-12-01 21:38:22] 2025-12-01 20:37:34,498 | INFO     | 
[2025-12-01 21:38:22] 2025-12-01 20:37:34,498 | INFO     | pilot is running in a VM
[2025-12-01 21:38:22] 2025-12-01 20:37:34,498 | INFO     | architecture information:
[2025-12-01 21:38:22] 2025-12-01 20:37:34,505 | INFO     | executing command: cat /etc/os-release
[2025-12-01 21:38:22] 2025-12-01 20:37:34,760 | INFO     | cat /etc/os-release:
[2025-12-01 21:38:22] NAME="CentOS Linux"
[2025-12-01 21:38:22] VERSION="7 (Core)"
[2025-12-01 21:38:22] ID="centos"
[2025-12-01 21:38:22] ID_LIKE="rhel fedora"
[2025-12-01 21:38:22] VERSION_ID="7"
[2025-12-01 21:38:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 21:38:22] ANSI_COLOR="0;31"
[2025-12-01 21:38:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 21:38:22] HOME_URL="https://www.centos.org/"
[2025-12-01 21:38:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 21:38:22] 
[2025-12-01 21:38:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 21:38:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 21:38:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 21:38:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 21:38:22] 
[2025-12-01 21:38:22] 2025-12-01 20:37:34,760 | INFO     | ***************************************
[2025-12-01 21:38:22] 2025-12-01 20:37:35,264 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-12-01 21:38:22] 2025-12-01 20:37:35,517 | INFO     | sufficient remaining disk space (488116322304 B)
[2025-12-01 21:38:22] 2025-12-01 20:37:35,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 21:38:22] 2025-12-01 20:37:35,517 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 21:38:22] 2025-12-01 20:37:35,517 | INFO     | update_server=False
[2025-12-01 21:38:22] 2025-12-01 20:37:35,518 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 21:38:22] 2025-12-01 20:37:35,909 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 21:38:22] 2025-12-01 20:37:35,910 | INFO     | aborting loop
[2025-12-01 21:38:22] 2025-12-01 20:37:36,137 | INFO     | all job control threads have been joined
[2025-12-01 21:38:22] 2025-12-01 20:37:36,351 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 21:38:22] 2025-12-01 20:37:36,432 | INFO     | all payload control threads have been joined
[2025-12-01 21:38:22] 2025-12-01 20:37:36,524 | INFO     | [job] retrieve thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:36,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 21:38:22] 2025-12-01 20:37:36,589 | INFO     | all data control threads have been joined
[2025-12-01 21:38:22] 2025-12-01 20:37:36,640 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:36,650 | INFO     | [job] validate thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:36,720 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:36,916 | INFO     | [job] job monitor thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:37,068 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 21:38:22] 2025-12-01 20:37:37,144 | INFO     | [job] control thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:37,338 | INFO     | [payload] validate_post thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:37,439 | INFO     | [payload] control thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:37,462 | INFO     | [payload] failed_post thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:37,494 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:37,596 | INFO     | [data] control thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:37,678 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:37,847 | INFO     | [data] copytool_in thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:38,074 | INFO     | [job] queue monitor thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:38,358 | INFO     | [data] copytool_out thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:37:40,584 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 21:38:22] 2025-12-01 20:38:04,364 | INFO     | PID=6519 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 21:38:22] 2025-12-01 20:38:04,364 | INFO     | .. there are 9 such processes running
[2025-12-01 21:38:22] 2025-12-01 20:38:04,364 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 21:38:22] 2025-12-01 20:38:04,365 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 21:38:22] 2025-12-01 20:38:04,365 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 21:38:22] 2025-12-01 20:38:11,637 | INFO     | [monitor] cgroup control has ended
[2025-12-01 21:38:22] 2025-12-01 20:38:12,695 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140408869361472)>', '<ExcThread(monitor, started 140408403236608)>']
[2025-12-01 21:38:22] 2025-12-01 20:38:13,417 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 21:38:22] 2025-12-01 20:38:13,418 | INFO     | [monitor] control thread has ended
[2025-12-01 21:38:22] 2025-12-01 20:38:17,720 | INFO     | all workflow threads have been joined
[2025-12-01 21:38:22] 2025-12-01 20:38:17,721 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 21:38:22] 2025-12-01 20:38:17,721 | INFO     | traces error code: 0
[2025-12-01 21:38:22] 2025-12-01 20:38:17,721 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 21:38:22] 2025-12-01 20:38:18,049 [wrapper] ==== pilot stdout END ====
[2025-12-01 21:38:22] 2025-12-01 20:38:18,156 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 21:38:22] 2025-12-01 20:38:18,204 [wrapper] pilotpid: 6519
[2025-12-01 21:38:22] 2025-12-01 20:38:18,253 [wrapper] Pilot exit status: 0
[2025-12-01 21:38:22] 2025-12-01 20:38:18,576 [wrapper] pandaids: 6899576188
[2025-12-01 21:38:22] 2025-12-01 20:38:19,498 [wrapper] cleanup supervisor_pilot 19167 6520
[2025-12-01 21:38:22] 2025-12-01 20:38:19,604 [wrapper] Test setup, not cleaning
[2025-12-01 21:38:22] 2025-12-01 20:38:19,693 [wrapper] apfmon messages muted
[2025-12-01 21:38:22] 2025-12-01 20:38:19,794 [wrapper] ==== wrapper stdout END ====
[2025-12-01 21:38:22] 2025-12-01 20:38:19,914 [wrapper] ==== wrapper stderr END ====
[2025-12-01 21:38:22]  *** Error codes and diagnostics ***
[2025-12-01 21:38:22]     "exeErrorCode": 0,
[2025-12-01 21:38:22]     "exeErrorDiag": "",
[2025-12-01 21:38:22]     "pilotErrorCode": 0,
[2025-12-01 21:38:22]     "pilotErrorDiag": "",
[2025-12-01 21:38:22]  *** Listing of results directory ***
[2025-12-01 21:38:22] total 1320480
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-01 21:38:22] -rwx------. 1 boinc boinc     36292 Nov 27 09:49 runpilot2-wrapper.sh
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc      5112 Nov 27 09:53 queuedata.json
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc       100 Dec  1 00:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 21:38:22] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 00:24 run_atlas
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc       105 Dec  1 00:24 job.xml
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc      6392 Dec  1 00:24 init_data.xml
[2025-12-01 21:38:22] -rw-r--r--. 2 boinc boinc 408948010 Dec  1 00:24 EVNT.47483658._003381.pool.root.1
[2025-12-01 21:38:22] -rw-r--r--. 2 boinc boinc     15847 Dec  1 00:24 start_atlas.sh
[2025-12-01 21:38:22] drwxrwx--x. 2 boinc boinc        68 Dec  1 00:24 shared
[2025-12-01 21:38:22] -rw-r--r--. 2 boinc boinc    590106 Dec  1 00:24 input.tar.gz
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc         0 Dec  1 00:24 boinc_lockfile
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc      2787 Dec  1 00:25 pandaJob.out
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc    993245 Dec  1 00:25 agis_schedconf.cvmfs.json
[2025-12-01 21:38:22] drwx------. 5 boinc boinc      4096 Dec  1 00:25 pilot3
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc       533 Dec  1 21:16 boinc_task_state.xml
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc 914393508 Dec  1 21:34 HITS.47556173._003376.pool.root.1
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc      1030 Dec  1 21:35 memory_monitor_summary.json
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc   1516240 Dec  1 21:35 agis_ddmendpoints.agis.ALL.json
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc   2347549 Dec  1 21:35 log.47556173._003376.job.log.tgz.1
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc        95 Dec  1 21:37 pilot_heartbeat.json
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc      7952 Dec  1 21:37 heartbeat.json
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc        29 Dec  1 21:38 wrapper_checkpoint.txt
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc      8192 Dec  1 21:38 boinc_mmap_file
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc      4884 Dec  1 21:38 pilotlog.txt
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc  10120621 Dec  1 21:38 log.47556173._003376.job.log.1
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc       353 Dec  1 21:38 output.list
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc       620 Dec  1 21:38 runtime_log
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc  12482560 Dec  1 21:38 result.tar.gz
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc       662 Dec  1 21:38 Y1BNDm9rmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhgKKDmrEmf5n.diag
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc      8833 Dec  1 21:38 runtime_log.err
[2025-12-01 21:38:22] -rw-r--r--. 1 boinc boinc     21502 Dec  1 21:38 stderr.txt
[2025-12-01 21:38:22] HITS file was successfully produced:
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc 914393508 Dec  1 21:34 shared/HITS.pool.root.1
[2025-12-01 21:38:22]  *** Contents of shared directory: ***
[2025-12-01 21:38:22] total 1305116
[2025-12-01 21:38:22] -rw-r--r--. 2 boinc boinc 408948010 Dec  1 00:24 ATLAS.root_0
[2025-12-01 21:38:22] -rw-r--r--. 2 boinc boinc     15847 Dec  1 00:24 start_atlas.sh
[2025-12-01 21:38:22] -rw-r--r--. 2 boinc boinc    590106 Dec  1 00:24 input.tar.gz
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc 914393508 Dec  1 21:34 HITS.pool.root.1
[2025-12-01 21:38:22] -rw-------. 1 boinc boinc  12482560 Dec  1 21:38 result.tar.gz
21:38:24 (2739): run_atlas exited; CPU time 289168.276568
21:38:24 (2739): called boinc_finish(0)

</stderr_txt>
]]>

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