Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:52:24 (19093): wrapper (7.7.26015): starting
02:52:24 (19093): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 02:52:24] Arguments: --nthreads 8
[2025-12-01 02:52:24] Threads: 8
[2025-12-01 02:52:24] Checking for CVMFS
[2025-12-01 02:52:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 02:52:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 02:52:25] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 02:52:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 02:52:26] 2.11.2.0 1038 178739 135620 153500 1 85 14209408 25165824 2554 130560 10 59209990 99.887 29877121 2239 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 02:52:26] CVMFS is ok
[2025-12-01 02:52:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 02:52:26] Checking for apptainer binary...
[2025-12-01 02:52:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 02:52:26] Running /usr/bin/apptainer --version
[2025-12-01 02:52:27] apptainer version 1.3.2-1.el7
[2025-12-01 02:52:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 02:52:47] cg-vwn304.simple-grid.lan
[2025-12-01 02:52:47] apptainer works
[2025-12-01 02:52:47] Set ATHENA_PROC_NUMBER=8
[2025-12-01 02:52:47] Set ATHENA_CORE_NUMBER=8
[2025-12-01 02:52:47] Starting ATLAS job with PandaID=6898720565
[2025-12-01 02:52:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 02:47:59]  *** The last 200 lines of the pilot log: ***
[2025-12-02 02:48:00] 2025-12-02 01:47:01,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 02:48:00] 2025-12-02 01:47:03,231 | INFO     | time since job start (85843s) is within the limit (172800.0s)
[2025-12-02 02:48:00] 2025-12-02 01:47:04,289 | INFO     | monitor loop #5714: job 0:6898720565 is in state 'finished'
[2025-12-02 02:48:00] 2025-12-02 01:47:04,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 02:48:00] 2025-12-02 01:47:05,240 | INFO     | time since job start (85845s) is within the limit (172800.0s)
[2025-12-02 02:48:00] 2025-12-02 01:47:06,796 | INFO     | monitor loop #5715: job 0:6898720565 is in state 'finished'
[2025-12-02 02:48:00] 2025-12-02 01:47:06,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 02:48:00] 2025-12-02 01:47:07,253 | INFO     | time since job start (85847s) is within the limit (172800.0s)
[2025-12-02 02:48:00] 2025-12-02 01:47:07,253 | INFO     | 85850s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-02 02:48:00] 2025-12-02 01:47:09,261 | INFO     | time since job start (85849s) is within the limit (172800.0s)
[2025-12-02 02:48:00] 2025-12-02 01:47:09,301 | INFO     | monitor loop #5716: job 0:6898720565 is in state 'finished'
[2025-12-02 02:48:00] 2025-12-02 01:47:09,301 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 02:48:00] 2025-12-02 01:47:11,267 | INFO     | time since job start (85851s) is within the limit (172800.0s)
[2025-12-02 02:48:00] 2025-12-02 01:47:11,814 | INFO     | monitor loop #5717: job 0:6898720565 is in state 'finished'
[2025-12-02 02:48:00] 2025-12-02 01:47:11,814 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 02:48:00] 2025-12-02 01:47:12,353 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 02:48:00] 2025-12-02 01:47:12,354 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-12-02 02:48:00] 2025-12-02 01:47:12,356 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6898720565/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 02:48:00] 2025-12-02 01:47:12,357 | INFO     | extracted standard info from prmon json
[2025-12-02 02:48:00] 2025-12-02 01:47:12,357 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 02:48:00] 2025-12-02 01:47:12,357 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 02:48:00] 2025-12-02 01:47:12,382 | INFO     | fitting pss+swap vs Time
[2025-12-02 02:48:00] 2025-12-02 01:47:12,385 | INFO     | sum of square deviations: 849045531005.1304
[2025-12-02 02:48:00] 2025-12-02 01:47:12,441 | INFO     | sum of deviations: 3974350415790.401
[2025-12-02 02:48:00] 2025-12-02 01:47:12,441 | INFO     | mean x: 1764597274.1065047
[2025-12-02 02:48:00] 2025-12-02 01:47:12,441 | INFO     | mean y: 2845471.527519657
[2025-12-02 02:48:00] 2025-12-02 01:47:12,441 | INFO     | intersect: -8257168454.634254
[2025-12-02 02:48:00] 2025-12-02 01:47:12,443 | INFO     | chi2: 22.29154850292789
[2025-12-02 02:48:00] 2025-12-02 01:47:12,445 | INFO     | sum of square deviations: 839975070271.4869
[2025-12-02 02:48:00] 2025-12-02 01:47:12,505 | INFO     | sum of deviations: 4436258706994.227
[2025-12-02 02:48:00] 2025-12-02 01:47:12,506 | INFO     | mean x: 1764597121.6104734
[2025-12-02 02:48:00] 2025-12-02 01:47:12,506 | INFO     | mean y: 2853236.381635581
[2025-12-02 02:48:00] 2025-12-02 01:47:12,506 | INFO     | intersect: -9316720191.61459
[2025-12-02 02:48:00] 2025-12-02 01:47:12,508 | INFO     | chi2: 19.169323033781296
[2025-12-02 02:48:00] 2025-12-02 01:47:12,508 | INFO     | current chi2=19.169323033781296 (change=14.006319339979914 %)
[2025-12-02 02:48:00] 2025-12-02 01:47:12,508 | INFO     | right removable region: 1393
[2025-12-02 02:48:00] 2025-12-02 01:47:12,510 | INFO     | sum of square deviations: 839974125991.4869
[2025-12-02 02:48:00] 2025-12-02 01:47:12,574 | INFO     | sum of deviations: 3376364802374.3525
[2025-12-02 02:48:00] 2025-12-02 01:47:12,574 | INFO     | mean x: 1764597426.6104734
[2025-12-02 02:48:00] 2025-12-02 01:47:12,574 | INFO     | mean y: 2855524.2087517935
[2025-12-02 02:48:00] 2025-12-02 01:47:12,574 | INFO     | intersect: -7090130387.155314
[2025-12-02 02:48:00] 2025-12-02 01:47:12,576 | INFO     | chi2: 17.316787884492385
[2025-12-02 02:48:00] 2025-12-02 01:47:12,576 | INFO     | current chi2=17.316787884492385 (change=22.316801445095177 %)
[2025-12-02 02:48:00] 2025-12-02 01:47:12,576 | INFO     | left removable region: 10
[2025-12-02 02:48:00] 2025-12-02 01:47:12,578 | INFO     | sum of square deviations: 820246071905.3147
[2025-12-02 02:48:00] 2025-12-02 01:47:12,639 | INFO     | sum of deviations: 3424411844888.8696
[2025-12-02 02:48:00] 2025-12-02 01:47:12,640 | INFO     | mean x: 1764597396.1193058
[2025-12-02 02:48:00] 2025-12-02 01:47:12,640 | INFO     | mean y: 2874144.7281272598
[2025-12-02 02:48:00] 2025-12-02 01:47:12,640 | INFO     | intersect: -7364071497.19937
[2025-12-02 02:48:00] 2025-12-02 01:47:12,642 | INFO     | chi2: 9.613213088358263
[2025-12-02 02:48:00] 2025-12-02 01:47:12,642 | INFO     | current memory leak: 4.17 B/s (using 1383 data points, chi2=9.61)
[2025-12-02 02:48:00] 2025-12-02 01:47:12,643 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-02 02:48:00] 2025-12-02 01:47:12,643 | INFO     | ..............................
[2025-12-02 02:48:00] 2025-12-02 01:47:12,644 | INFO     | . Timing measurements:
[2025-12-02 02:48:00] 2025-12-02 01:47:12,644 | INFO     | . get job = 0 s
[2025-12-02 02:48:00] 2025-12-02 01:47:12,644 | INFO     | . initial setup = 3 s
[2025-12-02 02:48:00] 2025-12-02 01:47:12,644 | INFO     | . payload setup = 118 s
[2025-12-02 02:48:00] 2025-12-02 01:47:12,644 | INFO     | . stage-in = 0 s
[2025-12-02 02:48:00] 2025-12-02 01:47:12,644 | INFO     | . payload execution = 85458 s
[2025-12-02 02:48:00] 2025-12-02 01:47:12,644 | INFO     | . stage-out = 4 s
[2025-12-02 02:48:00] 2025-12-02 01:47:12,644 | INFO     | . log creation = 1 s
[2025-12-02 02:48:00] 2025-12-02 01:47:12,644 | INFO     | ..............................
[2025-12-02 02:48:00] 2025-12-02 01:47:13,025 | INFO     | 
[2025-12-02 02:48:00] 2025-12-02 01:47:13,025 | INFO     | job summary report
[2025-12-02 02:48:00] 2025-12-02 01:47:13,025 | INFO     | --------------------------------------------------
[2025-12-02 02:48:00] 2025-12-02 01:47:13,025 | INFO     | PanDA job id: 6898720565
[2025-12-02 02:48:00] 2025-12-02 01:47:13,025 | INFO     | task id: 47556161
[2025-12-02 02:48:00] 2025-12-02 01:47:13,025 | INFO     | errors: (none)
[2025-12-02 02:48:00] 2025-12-02 01:47:13,025 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 02:48:00] 2025-12-02 01:47:13,025 | INFO     | pilot state: finished 
[2025-12-02 02:48:00] 2025-12-02 01:47:13,029 | INFO     | transexitcode: 0
[2025-12-02 02:48:00] 2025-12-02 01:47:13,029 | INFO     | exeerrorcode: 0
[2025-12-02 02:48:00] 2025-12-02 01:47:13,029 | INFO     | exeerrordiag: 
[2025-12-02 02:48:00] 2025-12-02 01:47:13,029 | INFO     | exitcode: 0
[2025-12-02 02:48:00] 2025-12-02 01:47:13,029 | INFO     | exitmsg: OK
[2025-12-02 02:48:00] 2025-12-02 01:47:13,029 | INFO     | cpuconsumptiontime: 321148 s
[2025-12-02 02:48:00] 2025-12-02 01:47:13,029 | INFO     | nevents: 1000
[2025-12-02 02:48:00] 2025-12-02 01:47:13,029 | INFO     | neventsw: 0
[2025-12-02 02:48:00] 2025-12-02 01:47:13,029 | INFO     | pid: 29467
[2025-12-02 02:48:00] 2025-12-02 01:47:13,029 | INFO     | pgrp: 29467
[2025-12-02 02:48:00] 2025-12-02 01:47:13,029 | INFO     | corecount: 8
[2025-12-02 02:48:00] 2025-12-02 01:47:13,029 | INFO     | event service: False
[2025-12-02 02:48:00] 2025-12-02 01:47:13,030 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 22: 2284320, 33: 2284348, 44: 2284404, 55: 2284560, 65: 2284588, 76: 2284616, 85: 2284934, 87: 2284962, 85580: 2346046
[2025-12-02 02:48:00] 2025-12-02 01:47:13,030 | INFO     | --------------------------------------------------
[2025-12-02 02:48:00] 2025-12-02 01:47:13,030 | INFO     | 
[2025-12-02 02:48:00] 2025-12-02 01:47:13,030 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-02 02:48:00] 2025-12-02 01:47:13,059 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,059 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,059 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,059 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,059 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,059 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,060 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,060 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,060 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,060 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,060 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,060 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,060 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,060 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,060 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,060 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,061 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,061 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 02:48:00] 2025-12-02 01:47:13,061 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,061 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 02:48:00] 2025-12-02 01:47:13,061 | INFO     | job 6898720565 has completed (purged errors)
[2025-12-02 02:48:00] 2025-12-02 01:47:13,061 | INFO     | overall cleanup function is called
[2025-12-02 02:48:00] 2025-12-02 01:47:14,077 | INFO     | --- collectZombieJob: --- 10, [29467]
[2025-12-02 02:48:00] 2025-12-02 01:47:14,077 | INFO     | zombie collector waiting for pid 29467
[2025-12-02 02:48:00] 2025-12-02 01:47:14,077 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 02:48:00] 2025-12-02 01:47:14,077 | INFO     | collected zombie processes
[2025-12-02 02:48:00] 2025-12-02 01:47:14,077 | INFO     | will attempt to kill all subprocesses of pid=29467
[2025-12-02 02:48:00] 2025-12-02 01:47:14,172 | INFO     | process IDs to be killed: [29467] (in reverse order)
[2025-12-02 02:48:00] 2025-12-02 01:47:14,657 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 02:48:00] 2025-12-02 01:47:14,658 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 02:48:00] 2025-12-02 01:47:14,661 | INFO     | did not find any defunct processes belonging to 29467
[2025-12-02 02:48:00] 2025-12-02 01:47:14,663 | INFO     | did not find any defunct processes belonging to 29467
[2025-12-02 02:48:00] 2025-12-02 01:47:14,705 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 02:48:00] 2025-12-02 01:47:14,705 | INFO     | ready for new job
[2025-12-02 02:48:00] 2025-12-02 01:47:14,705 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 02:48:00] 2025-12-02 01:47:14,710 | INFO     | ***************************************
[2025-12-02 02:48:00] 2025-12-02 01:47:14,711 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 02:48:00] 2025-12-02 01:47:14,711 | INFO     | ***************************************
[2025-12-02 02:48:00] 2025-12-02 01:47:14,711 | INFO     | 
[2025-12-02 02:48:00] 2025-12-02 01:47:14,711 | INFO     | pilot is running in a VM
[2025-12-02 02:48:00] 2025-12-02 01:47:14,711 | INFO     | architecture information:
[2025-12-02 02:48:00] 2025-12-02 01:47:14,722 | INFO     | executing command: cat /etc/os-release
[2025-12-02 02:48:00] 2025-12-02 01:47:14,919 | INFO     | cat /etc/os-release:
[2025-12-02 02:48:00] NAME="CentOS Linux"
[2025-12-02 02:48:00] VERSION="7 (Core)"
[2025-12-02 02:48:00] ID="centos"
[2025-12-02 02:48:00] ID_LIKE="rhel fedora"
[2025-12-02 02:48:00] VERSION_ID="7"
[2025-12-02 02:48:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 02:48:00] ANSI_COLOR="0;31"
[2025-12-02 02:48:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 02:48:00] HOME_URL="https://www.centos.org/"
[2025-12-02 02:48:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 02:48:00] 
[2025-12-02 02:48:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 02:48:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 02:48:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 02:48:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 02:48:00] 
[2025-12-02 02:48:00] 2025-12-02 01:47:14,919 | INFO     | ***************************************
[2025-12-02 02:48:00] 2025-12-02 01:47:15,422 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-02 02:48:00] 2025-12-02 01:47:15,677 | INFO     | sufficient remaining disk space (487976861696 B)
[2025-12-02 02:48:00] 2025-12-02 01:47:15,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 02:48:00] 2025-12-02 01:47:15,677 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 02:48:00] 2025-12-02 01:47:15,677 | INFO     | update_server=False
[2025-12-02 02:48:00] 2025-12-02 01:47:15,677 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 02:48:00] 2025-12-02 01:47:15,677 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:48:00] 2025-12-02 01:47:15,678 | INFO     | aborting loop
[2025-12-02 02:48:00] 2025-12-02 01:47:15,716 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 02:48:00] 2025-12-02 01:47:15,843 | INFO     | all payload control threads have been joined
[2025-12-02 02:48:00] 2025-12-02 01:47:16,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 02:48:00] 2025-12-02 01:47:16,519 | INFO     | all job control threads have been joined
[2025-12-02 02:48:00] 2025-12-02 01:47:16,587 | INFO     | all data control threads have been joined
[2025-12-02 02:48:00] 2025-12-02 01:47:16,683 | INFO     | [job] retrieve thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:16,683 | INFO     | [job] job monitor thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:16,751 | INFO     | [payload] validate_post thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:16,849 | INFO     | [payload] control thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:16,927 | INFO     | [payload] failed_post thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:16,953 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:17,028 | INFO     | [job] validate thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:17,484 | INFO     | [data] copytool_in thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:17,525 | INFO     | [job] control thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:17,571 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:17,593 | INFO     | [data] control thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:17,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:48:00] 2025-12-02 01:47:17,775 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:18,516 | INFO     | [data] copytool_out thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:18,780 | INFO     | [job] queue monitor thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:19,725 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:26,367 | INFO     | job.realtimelogging is not enabled
[2025-12-02 02:48:00] 2025-12-02 01:47:27,373 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 02:48:00] 2025-12-02 01:47:44,449 | INFO     | PID=22861 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 02:48:00] 2025-12-02 01:47:44,449 | INFO     | .. there are 9 such processes running
[2025-12-02 02:48:00] 2025-12-02 01:47:44,450 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 02:48:00] 2025-12-02 01:47:44,450 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 02:48:00] 2025-12-02 01:47:44,450 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 02:48:00] 2025-12-02 01:47:49,652 | INFO     | [monitor] cgroup control has ended
[2025-12-02 02:48:00] 2025-12-02 01:47:50,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140298531813184)>', '<ExcThread(monitor, started 140297723967232)>']
[2025-12-02 02:48:00] 2025-12-02 01:47:50,485 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 02:48:00] 2025-12-02 01:47:50,485 | INFO     | [monitor] control thread has ended
[2025-12-02 02:48:00] 2025-12-02 01:47:55,371 | INFO     | all workflow threads have been joined
[2025-12-02 02:48:00] 2025-12-02 01:47:55,371 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 02:48:00] 2025-12-02 01:47:55,371 | INFO     | traces error code: 0
[2025-12-02 02:48:00] 2025-12-02 01:47:55,371 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 02:48:00] 2025-12-02 01:47:55,653 [wrapper] ==== pilot stdout END ====
[2025-12-02 02:48:00] 2025-12-02 01:47:55,753 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 02:48:00] 2025-12-02 01:47:55,808 [wrapper] pilotpid: 22861
[2025-12-02 02:48:00] 2025-12-02 01:47:55,921 [wrapper] Pilot exit status: 0
[2025-12-02 02:48:00] 2025-12-02 01:47:56,293 [wrapper] pandaids: 6898720565
[2025-12-02 02:48:00] 2025-12-02 01:47:57,321 [wrapper] cleanup supervisor_pilot 31612 22862
[2025-12-02 02:48:00] 2025-12-02 01:47:57,421 [wrapper] Test setup, not cleaning
[2025-12-02 02:48:00] 2025-12-02 01:47:57,528 [wrapper] apfmon messages muted
[2025-12-02 02:48:00] 2025-12-02 01:47:57,632 [wrapper] ==== wrapper stdout END ====
[2025-12-02 02:48:00] 2025-12-02 01:47:57,699 [wrapper] ==== wrapper stderr END ====
[2025-12-02 02:48:00]  *** Error codes and diagnostics ***
[2025-12-02 02:48:00]     "exeErrorCode": 0,
[2025-12-02 02:48:00]     "exeErrorDiag": "",
[2025-12-02 02:48:00]     "pilotErrorCode": 0,
[2025-12-02 02:48:00]     "pilotErrorDiag": "",
[2025-12-02 02:48:00]  *** Listing of results directory ***
[2025-12-02 02:48:00] total 1334512
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc    576529 Nov 26 23:16 pilot3.tar.gz
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc      5112 Nov 26 23:17 queuedata.json
[2025-12-02 02:48:00] -rwx------. 1 boinc boinc     36292 Nov 26 23:19 runpilot2-wrapper.sh
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc       100 Dec  1 02:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 02:48:00] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 02:52 run_atlas
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc       105 Dec  1 02:52 job.xml
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc      6391 Dec  1 02:52 init_data.xml
[2025-12-02 02:48:00] -rw-r--r--. 2 boinc boinc 414316913 Dec  1 02:52 EVNT.47483658._002698.pool.root.1
[2025-12-02 02:48:00] -rw-r--r--. 2 boinc boinc     15847 Dec  1 02:52 start_atlas.sh
[2025-12-02 02:48:00] drwxrwx--x. 2 boinc boinc        68 Dec  1 02:52 shared
[2025-12-02 02:48:00] -rw-r--r--. 2 boinc boinc    590107 Dec  1 02:52 input.tar.gz
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc         0 Dec  1 02:52 boinc_lockfile
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc      2785 Dec  1 02:52 pandaJob.out
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc    993253 Dec  1 02:56 agis_schedconf.cvmfs.json
[2025-12-02 02:48:00] drwx------. 5 boinc boinc      4096 Dec  1 02:56 pilot3
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc       533 Dec  2 02:26 boinc_task_state.xml
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc 920509737 Dec  2 02:44 HITS.47556161._006803.pool.root.1
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc      1030 Dec  2 02:45 memory_monitor_summary.json
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc   1516240 Dec  2 02:45 agis_ddmendpoints.agis.ALL.json
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc   2484664 Dec  2 02:45 log.47556161._006803.job.log.tgz.1
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc      8622 Dec  2 02:47 heartbeat.json
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc        95 Dec  2 02:47 pilot_heartbeat.json
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc        29 Dec  2 02:47 wrapper_checkpoint.txt
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc      8192 Dec  2 02:47 boinc_mmap_file
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc      4956 Dec  2 02:47 pilotlog.txt
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc  11419501 Dec  2 02:47 log.47556161._006803.job.log.1
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc       353 Dec  2 02:47 output.list
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc       620 Dec  2 02:47 runtime_log
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc  13926400 Dec  2 02:47 result.tar.gz
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc      8817 Dec  2 02:47 runtime_log.err
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc       662 Dec  2 02:47 4GIODmV2ci8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZLNKDmsLwoLo.diag
[2025-12-02 02:48:00] -rw-r--r--. 1 boinc boinc     21441 Dec  2 02:48 stderr.txt
[2025-12-02 02:48:00] HITS file was successfully produced:
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc 920509737 Dec  2 02:44 shared/HITS.pool.root.1
[2025-12-02 02:48:00]  *** Contents of shared directory: ***
[2025-12-02 02:48:00] total 1317740
[2025-12-02 02:48:00] -rw-r--r--. 2 boinc boinc 414316913 Dec  1 02:52 ATLAS.root_0
[2025-12-02 02:48:00] -rw-r--r--. 2 boinc boinc     15847 Dec  1 02:52 start_atlas.sh
[2025-12-02 02:48:00] -rw-r--r--. 2 boinc boinc    590107 Dec  1 02:52 input.tar.gz
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc 920509737 Dec  2 02:44 HITS.pool.root.1
[2025-12-02 02:48:00] -rw-------. 1 boinc boinc  13926400 Dec  2 02:47 result.tar.gz
02:48:01 (19093): run_atlas exited; CPU time 321772.013485
02:48:01 (19093): called boinc_finish(0)

</stderr_txt>
]]>

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