Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:45:43 (29977): wrapper (7.7.26015): starting
04:45:43 (29977): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 04:45:43] Arguments: --nthreads 8
[2025-12-01 04:45:43] Threads: 8
[2025-12-01 04:45:43] Checking for CVMFS
[2025-12-01 04:45:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 04:45:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 04:45:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 04:45:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 04:45:46] 2.11.2.0 16837 292067 139936 153503 3 286 14550592 25165824 2553 130560 11 124181473 99.869 76517205 3300 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 04:45:46] CVMFS is ok
[2025-12-01 04:45:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 04:45:46] Checking for apptainer binary...
[2025-12-01 04:45:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 04:45:46] Running /usr/bin/apptainer --version
[2025-12-01 04:45:46] apptainer version 1.3.2-1.el7
[2025-12-01 04:45:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 04:45:50] cg-vwn322.simple-grid.lan
[2025-12-01 04:45:50] apptainer works
[2025-12-01 04:45:50] Set ATHENA_PROC_NUMBER=8
[2025-12-01 04:45:50] Set ATHENA_CORE_NUMBER=8
[2025-12-01 04:45:50] Starting ATLAS job with PandaID=6899464027
[2025-12-01 04:45:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 04:38:11]  *** The last 200 lines of the pilot log: ***
[2025-12-02 04:38:11] 2025-12-02 03:37:05,302 | INFO     | time since job start (85653s) is within the limit (172800.0s)
[2025-12-02 04:38:11] 2025-12-02 03:37:06,545 | INFO     | monitor loop #5704: job 0:6899464027 is in state 'finished'
[2025-12-02 04:38:11] 2025-12-02 03:37:06,545 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:38:11] 2025-12-02 03:37:07,313 | INFO     | time since job start (85655s) is within the limit (172800.0s)
[2025-12-02 04:38:11] 2025-12-02 03:37:09,054 | INFO     | monitor loop #5705: job 0:6899464027 is in state 'finished'
[2025-12-02 04:38:11] 2025-12-02 03:37:09,054 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:38:11] 2025-12-02 03:37:09,320 | INFO     | time since job start (85657s) is within the limit (172800.0s)
[2025-12-02 04:38:11] 2025-12-02 03:37:11,326 | INFO     | time since job start (85659s) is within the limit (172800.0s)
[2025-12-02 04:38:11] 2025-12-02 03:37:11,564 | INFO     | monitor loop #5706: job 0:6899464027 is in state 'finished'
[2025-12-02 04:38:11] 2025-12-02 03:37:11,564 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:38:11] 2025-12-02 03:37:13,338 | INFO     | time since job start (85661s) is within the limit (172800.0s)
[2025-12-02 04:38:11] 2025-12-02 03:37:14,069 | INFO     | monitor loop #5707: job 0:6899464027 is in state 'finished'
[2025-12-02 04:38:11] 2025-12-02 03:37:14,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:38:11] 2025-12-02 03:37:14,514 | INFO     | PID=1356 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 04:38:11] 2025-12-02 03:37:14,514 | INFO     | .. there are 9 such processes running
[2025-12-02 04:38:11] 2025-12-02 03:37:15,073 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 04:38:11] 2025-12-02 03:37:15,075 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-02 04:38:11] 2025-12-02 03:37:15,077 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6899464027/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 04:38:11] 2025-12-02 03:37:15,078 | INFO     | extracted standard info from prmon json
[2025-12-02 04:38:11] 2025-12-02 03:37:15,078 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 04:38:11] 2025-12-02 03:37:15,078 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 04:38:11] 2025-12-02 03:37:15,122 | INFO     | fitting pss+swap vs Time
[2025-12-02 04:38:11] 2025-12-02 03:37:15,124 | INFO     | sum of square deviations: 847223694520.0752
[2025-12-02 04:38:11] 2025-12-02 03:37:15,229 | INFO     | sum of deviations: 2603438938757.863
[2025-12-02 04:38:11] 2025-12-02 03:37:15,229 | INFO     | mean x: 1764603874.5979972
[2025-12-02 04:38:11] 2025-12-02 03:37:15,229 | INFO     | mean y: 2855122.949928469
[2025-12-02 04:38:11] 2025-12-02 03:37:15,229 | INFO     | intersect: -5419607053.59932
[2025-12-02 04:38:11] 2025-12-02 03:37:15,231 | INFO     | chi2: 13.414794385427337
[2025-12-02 04:38:11] 2025-12-02 03:37:15,238 | INFO     | sum of square deviations: 838166216111.5275
[2025-12-02 04:38:11] 2025-12-02 03:37:15,313 | INFO     | sum of deviations: 3077342760767.5996
[2025-12-02 04:38:11] 2025-12-02 03:37:15,314 | INFO     | mean x: 1764603722.1019382
[2025-12-02 04:38:11] 2025-12-02 03:37:15,314 | INFO     | mean y: 2863101.5944005745
[2025-12-02 04:38:11] 2025-12-02 03:37:15,314 | INFO     | intersect: -6475912092.932647
[2025-12-02 04:38:11] 2025-12-02 03:37:15,316 | INFO     | chi2: 10.062873408800451
[2025-12-02 04:38:11] 2025-12-02 03:37:15,316 | INFO     | current chi2=10.062873408800451 (change=24.98674881120892 %)
[2025-12-02 04:38:11] 2025-12-02 03:37:15,316 | INFO     | right removable region: 1392
[2025-12-02 04:38:11] 2025-12-02 03:37:15,318 | INFO     | sum of square deviations: 838165364796.7278
[2025-12-02 04:38:11] 2025-12-02 03:37:15,387 | INFO     | sum of deviations: 2212409855227.926
[2025-12-02 04:38:11] 2025-12-02 03:37:15,387 | INFO     | mean x: 1764604027.1012204
[2025-12-02 04:38:11] 2025-12-02 03:37:15,388 | INFO     | mean y: 2861700.3977027996
[2025-12-02 04:38:11] 2025-12-02 03:37:15,388 | INFO     | intersect: -4654963001.152011
[2025-12-02 04:38:11] 2025-12-02 03:37:15,389 | INFO     | chi2: 11.086819328486754
[2025-12-02 04:38:11] 2025-12-02 03:37:15,390 | INFO     | current chi2=11.086819328486754 (change=17.353788586349793 %)
[2025-12-02 04:38:11] 2025-12-02 03:37:15,390 | INFO     | left removable region: 10
[2025-12-02 04:38:11] 2025-12-02 03:37:15,392 | INFO     | sum of square deviations: 818466139011.8649
[2025-12-02 04:38:11] 2025-12-02 03:37:15,448 | INFO     | sum of deviations: 2709023315946.888
[2025-12-02 04:38:11] 2025-12-02 03:37:15,448 | INFO     | mean x: 1764603996.6063676
[2025-12-02 04:38:11] 2025-12-02 03:37:15,448 | INFO     | mean y: 2873262.558610709
[2025-12-02 04:38:11] 2025-12-02 03:37:15,449 | INFO     | intersect: -5837751220.6864
[2025-12-02 04:38:11] 2025-12-02 03:37:15,450 | INFO     | chi2: 6.729680161215303
[2025-12-02 04:38:11] 2025-12-02 03:37:15,450 | INFO     | current memory leak: 3.31 B/s (using 1382 data points, chi2=6.73)
[2025-12-02 04:38:11] 2025-12-02 03:37:15,452 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-02 04:38:11] 2025-12-02 03:37:15,452 | INFO     | ..............................
[2025-12-02 04:38:11] 2025-12-02 03:37:15,452 | INFO     | . Timing measurements:
[2025-12-02 04:38:11] 2025-12-02 03:37:15,452 | INFO     | . get job = 0 s
[2025-12-02 04:38:11] 2025-12-02 03:37:15,453 | INFO     | . initial setup = 7 s
[2025-12-02 04:38:11] 2025-12-02 03:37:15,453 | INFO     | . payload setup = 92 s
[2025-12-02 04:38:11] 2025-12-02 03:37:15,453 | INFO     | . stage-in = 0 s
[2025-12-02 04:38:11] 2025-12-02 03:37:15,453 | INFO     | . payload execution = 85309 s
[2025-12-02 04:38:11] 2025-12-02 03:37:15,453 | INFO     | . stage-out = 6 s
[2025-12-02 04:38:11] 2025-12-02 03:37:15,453 | INFO     | . log creation = 2 s
[2025-12-02 04:38:11] 2025-12-02 03:37:15,453 | INFO     | ..............................
[2025-12-02 04:38:11] 2025-12-02 03:37:15,529 | INFO     | time since job start (85663s) is within the limit (172800.0s)
[2025-12-02 04:38:11] 2025-12-02 03:37:16,011 | INFO     | 
[2025-12-02 04:38:11] 2025-12-02 03:37:16,011 | INFO     | job summary report
[2025-12-02 04:38:11] 2025-12-02 03:37:16,011 | INFO     | --------------------------------------------------
[2025-12-02 04:38:11] 2025-12-02 03:37:16,011 | INFO     | PanDA job id: 6899464027
[2025-12-02 04:38:11] 2025-12-02 03:37:16,011 | INFO     | task id: 47556173
[2025-12-02 04:38:11] 2025-12-02 03:37:16,011 | INFO     | errors: (none)
[2025-12-02 04:38:11] 2025-12-02 03:37:16,011 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | pilot state: finished 
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | transexitcode: 0
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | exeerrorcode: 0
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | exeerrordiag: 
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | exitcode: 0
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | exitmsg: OK
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | cpuconsumptiontime: 322212 s
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | nevents: 1000
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | neventsw: 0
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | pid: 7925
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | pgrp: 7925
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | corecount: 8
[2025-12-02 04:38:11] 2025-12-02 03:37:16,012 | INFO     | event service: False
[2025-12-02 04:38:11] 2025-12-02 03:37:16,013 | INFO     | sizes: {0: 2284089, 1: 2284344, 12: 2284344, 23: 2284372, 34: 2284400, 44: 2284428, 55: 2284584, 65: 2284874, 66: 2284902, 85406: 2344389, 85414: 2353383, 85417: 2
[2025-12-02 04:38:11] 2025-12-02 03:37:16,013 | INFO     | --------------------------------------------------
[2025-12-02 04:38:11] 2025-12-02 03:37:16,013 | INFO     | 
[2025-12-02 04:38:11] 2025-12-02 03:37:16,013 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-12-02 04:38:11] 2025-12-02 03:37:16,473 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,474 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,474 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,474 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,474 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,474 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,474 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,474 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,474 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,474 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,474 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,475 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,475 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,475 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,475 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,475 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 04:38:11] 2025-12-02 03:37:16,475 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,475 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 04:38:11] 2025-12-02 03:37:16,476 | INFO     | job 6899464027 has completed (purged errors)
[2025-12-02 04:38:11] 2025-12-02 03:37:16,476 | INFO     | overall cleanup function is called
[2025-12-02 04:38:11] 2025-12-02 03:37:17,493 | INFO     | --- collectZombieJob: --- 10, [7925]
[2025-12-02 04:38:11] 2025-12-02 03:37:17,493 | INFO     | zombie collector waiting for pid 7925
[2025-12-02 04:38:11] 2025-12-02 03:37:17,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 04:38:11] 2025-12-02 03:37:17,493 | INFO     | collected zombie processes
[2025-12-02 04:38:11] 2025-12-02 03:37:17,493 | INFO     | will attempt to kill all subprocesses of pid=7925
[2025-12-02 04:38:11] 2025-12-02 03:37:17,633 | INFO     | process IDs to be killed: [7925] (in reverse order)
[2025-12-02 04:38:11] 2025-12-02 03:37:18,428 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 04:38:11] 2025-12-02 03:37:18,429 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 04:38:11] 2025-12-02 03:37:18,432 | INFO     | did not find any defunct processes belonging to 7925
[2025-12-02 04:38:11] 2025-12-02 03:37:18,434 | INFO     | did not find any defunct processes belonging to 7925
[2025-12-02 04:38:11] 2025-12-02 03:37:18,485 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 04:38:11] 2025-12-02 03:37:18,485 | INFO     | ready for new job
[2025-12-02 04:38:11] 2025-12-02 03:37:18,485 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 04:38:11] 2025-12-02 03:37:18,490 | INFO     | ***************************************
[2025-12-02 04:38:11] 2025-12-02 03:37:18,491 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 04:38:11] 2025-12-02 03:37:18,491 | INFO     | ***************************************
[2025-12-02 04:38:11] 2025-12-02 03:37:18,491 | INFO     | 
[2025-12-02 04:38:11] 2025-12-02 03:37:18,492 | INFO     | pilot is running in a VM
[2025-12-02 04:38:11] 2025-12-02 03:37:18,492 | INFO     | architecture information:
[2025-12-02 04:38:11] 2025-12-02 03:37:18,503 | INFO     | executing command: cat /etc/os-release
[2025-12-02 04:38:11] 2025-12-02 03:37:18,764 | INFO     | cat /etc/os-release:
[2025-12-02 04:38:11] NAME="CentOS Linux"
[2025-12-02 04:38:11] VERSION="7 (Core)"
[2025-12-02 04:38:11] ID="centos"
[2025-12-02 04:38:11] ID_LIKE="rhel fedora"
[2025-12-02 04:38:11] VERSION_ID="7"
[2025-12-02 04:38:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 04:38:11] ANSI_COLOR="0;31"
[2025-12-02 04:38:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 04:38:11] HOME_URL="https://www.centos.org/"
[2025-12-02 04:38:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 04:38:11] 
[2025-12-02 04:38:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 04:38:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 04:38:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 04:38:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 04:38:11] 
[2025-12-02 04:38:11] 2025-12-02 03:37:18,764 | INFO     | ***************************************
[2025-12-02 04:38:11] 2025-12-02 03:37:19,268 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-12-02 04:38:11] 2025-12-02 03:37:19,494 | INFO     | sufficient remaining disk space (488036630528 B)
[2025-12-02 04:38:11] 2025-12-02 03:37:19,495 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 04:38:11] 2025-12-02 03:37:19,495 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 04:38:11] 2025-12-02 03:37:19,495 | INFO     | update_server=False
[2025-12-02 04:38:11] 2025-12-02 03:37:19,495 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 04:38:11] 2025-12-02 03:37:19,496 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 04:38:11] 2025-12-02 03:37:19,525 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 04:38:11] 2025-12-02 03:37:20,096 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:38:11] 2025-12-02 03:37:20,096 | INFO     | aborting loop
[2025-12-02 04:38:11] 2025-12-02 03:37:20,276 | INFO     | all data control threads have been joined
[2025-12-02 04:38:11] 2025-12-02 03:37:20,284 | INFO     | all job control threads have been joined
[2025-12-02 04:38:11] 2025-12-02 03:37:20,454 | INFO     | all payload control threads have been joined
[2025-12-02 04:38:11] 2025-12-02 03:37:20,501 | INFO     | [job] retrieve thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:20,595 | INFO     | [payload] failed_post thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:20,596 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:38:11] 2025-12-02 03:37:20,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:21,102 | INFO     | [job] job monitor thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:21,248 | INFO     | [payload] validate_post thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:21,283 | INFO     | [data] control thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:21,290 | INFO     | [job] control thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:21,447 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:21,462 | INFO     | [payload] control thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:21,503 | INFO     | [data] copytool_out thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:21,547 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:21,601 | INFO     | [job] queue monitor thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:21,685 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:21,882 | INFO     | [job] validate thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:21,990 | INFO     | [data] copytool_in thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:23,534 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 04:38:11] 2025-12-02 03:37:48,718 | INFO     | PID=1356 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 04:38:11] 2025-12-02 03:37:48,718 | INFO     | .. there are 9 such processes running
[2025-12-02 04:38:11] 2025-12-02 03:37:48,720 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 04:38:11] 2025-12-02 03:37:48,720 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 04:38:11] 2025-12-02 03:37:48,720 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 04:38:11] 2025-12-02 03:38:01,289 | INFO     | [monitor] cgroup control has ended
[2025-12-02 04:38:11] 2025-12-02 03:38:03,162 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140168326616896)>', '<ExcThread(monitor, started 140167524378368)>']
[2025-12-02 04:38:11] 2025-12-02 03:38:03,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 04:38:11] 2025-12-02 03:38:03,810 | INFO     | [monitor] control thread has ended
[2025-12-02 04:38:11] 2025-12-02 03:38:08,188 | INFO     | all workflow threads have been joined
[2025-12-02 04:38:11] 2025-12-02 03:38:08,188 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 04:38:11] 2025-12-02 03:38:08,188 | INFO     | traces error code: 0
[2025-12-02 04:38:11] 2025-12-02 03:38:08,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 04:38:11] 2025-12-02 03:38:08,534 [wrapper] ==== pilot stdout END ====
[2025-12-02 04:38:11] 2025-12-02 03:38:08,578 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 04:38:11] 2025-12-02 03:38:08,651 [wrapper] pilotpid: 1356
[2025-12-02 04:38:11] 2025-12-02 03:38:08,654 [wrapper] Pilot exit status: 0
[2025-12-02 04:38:11] 2025-12-02 03:38:08,692 [wrapper] pandaids: 6899464027
[2025-12-02 04:38:11] 2025-12-02 03:38:08,799 [wrapper] cleanup supervisor_pilot 27462 1357
[2025-12-02 04:38:11] 2025-12-02 03:38:08,893 [wrapper] Test setup, not cleaning
[2025-12-02 04:38:11] 2025-12-02 03:38:08,999 [wrapper] apfmon messages muted
[2025-12-02 04:38:11] 2025-12-02 03:38:09,104 [wrapper] ==== wrapper stdout END ====
[2025-12-02 04:38:11] 2025-12-02 03:38:09,176 [wrapper] ==== wrapper stderr END ====
[2025-12-02 04:38:11]  *** Error codes and diagnostics ***
[2025-12-02 04:38:11]     "exeErrorCode": 0,
[2025-12-02 04:38:11]     "exeErrorDiag": "",
[2025-12-02 04:38:11]     "pilotErrorCode": 0,
[2025-12-02 04:38:11]     "pilotErrorDiag": "",
[2025-12-02 04:38:11]  *** Listing of results directory ***
[2025-12-02 04:38:11] total 1336572
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-02 04:38:11] -rwx------. 1 boinc boinc     36292 Nov 27 09:49 runpilot2-wrapper.sh
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc      5112 Nov 27 09:53 queuedata.json
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc       100 Dec  1 04:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 04:38:11] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 04:45 run_atlas
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc       105 Dec  1 04:45 job.xml
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc      6390 Dec  1 04:45 init_data.xml
[2025-12-02 04:38:11] -rw-r--r--. 2 boinc boinc 410606846 Dec  1 04:45 EVNT.47483658._003327.pool.root.1
[2025-12-02 04:38:11] -rw-r--r--. 2 boinc boinc     15847 Dec  1 04:45 start_atlas.sh
[2025-12-02 04:38:11] drwxrwx--x. 2 boinc boinc        68 Dec  1 04:45 shared
[2025-12-02 04:38:11] -rw-r--r--. 2 boinc boinc    590106 Dec  1 04:45 input.tar.gz
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc         0 Dec  1 04:45 boinc_lockfile
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc      2787 Dec  1 04:45 pandaJob.out
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc    993245 Dec  1 04:49 agis_schedconf.cvmfs.json
[2025-12-02 04:38:11] drwx------. 5 boinc boinc      4096 Dec  1 04:49 pilot3
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc       533 Dec  2 04:14 boinc_task_state.xml
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc 926612503 Dec  2 04:34 HITS.47556173._002837.pool.root.1
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc      1033 Dec  2 04:35 memory_monitor_summary.json
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc   1516240 Dec  2 04:35 agis_ddmendpoints.agis.ALL.json
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc   2461735 Dec  2 04:35 log.47556173._002837.job.log.tgz.1
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc      7940 Dec  2 04:37 heartbeat.json
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc        95 Dec  2 04:37 pilot_heartbeat.json
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc        29 Dec  2 04:38 wrapper_checkpoint.txt
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc      8192 Dec  2 04:38 boinc_mmap_file
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc      4883 Dec  2 04:38 pilotlog.txt
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc  11306399 Dec  2 04:38 log.47556173._002837.job.log.1
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc       353 Dec  2 04:38 output.list
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc       620 Dec  2 04:38 runtime_log
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc  13783040 Dec  2 04:38 result.tar.gz
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc       662 Dec  2 04:38 wL8KDm9rmi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsrNKDmNq61nn.diag
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc      8817 Dec  2 04:38 runtime_log.err
[2025-12-02 04:38:11] -rw-r--r--. 1 boinc boinc     21431 Dec  2 04:38 stderr.txt
[2025-12-02 04:38:11] HITS file was successfully produced:
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc 926612503 Dec  2 04:34 shared/HITS.pool.root.1
[2025-12-02 04:38:11]  *** Contents of shared directory: ***
[2025-12-02 04:38:11] total 1319936
[2025-12-02 04:38:11] -rw-r--r--. 2 boinc boinc 410606846 Dec  1 04:45 ATLAS.root_0
[2025-12-02 04:38:11] -rw-r--r--. 2 boinc boinc     15847 Dec  1 04:45 start_atlas.sh
[2025-12-02 04:38:11] -rw-r--r--. 2 boinc boinc    590106 Dec  1 04:45 input.tar.gz
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc 926612503 Dec  2 04:34 HITS.pool.root.1
[2025-12-02 04:38:11] -rw-------. 1 boinc boinc  13783040 Dec  2 04:38 result.tar.gz
04:38:12 (29977): run_atlas exited; CPU time 322831.749060
04:38:12 (29977): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN