Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:08:56 (2568274): wrapper (7.7.26015): starting
18:08:56 (2568274): wrapper: running run_atlas (--nthreads 3)
[2025-12-02 18:08:56] Arguments: --nthreads 3
[2025-12-02 18:08:56] Threads: 3
[2025-12-02 18:08:56] Checking for CVMFS
[2025-12-02 18:08:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 18:08:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 18:08:56] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 18:08:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 18:08:57] 2.9.2.0 2501968 489 53256 153562 3 81 35249359 36864000 0 130560 0 182275 99.984 9486 4508 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-02 18:08:57] CVMFS is ok
[2025-12-02 18:08:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 18:08:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 18:08:57] Further information can be found at the LHC@home message board.
[2025-12-02 18:08:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 18:08:57] Checking for apptainer binary...
[2025-12-02 18:08:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 18:08:57] Running /usr/bin/apptainer --version
[2025-12-02 18:08:57] apptainer version 1.4.1-1.1
[2025-12-02 18:08:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 18:08:57] thA385
[2025-12-02 18:08:57] apptainer works
[2025-12-02 18:08:57] Set ATHENA_PROC_NUMBER=3
[2025-12-02 18:08:57] Set ATHENA_CORE_NUMBER=3
[2025-12-02 18:08:57] Starting ATLAS job with PandaID=6899449815
[2025-12-02 18:08:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 01:59:42]  *** The last 200 lines of the pilot log: ***
[2025-12-03 01:59:42] 2025-12-03 00:59:12,783 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 01:59:42] 2025-12-03 00:59:12,783 | INFO     | collected zombie processes
[2025-12-03 01:59:42] 2025-12-03 00:59:12,783 | INFO     | will attempt to kill all subprocesses of pid=2578452
[2025-12-03 01:59:42] 2025-12-03 00:59:12,826 | INFO     | process IDs to be killed: [2578452] (in reverse order)
[2025-12-03 01:59:42] 2025-12-03 00:59:12,851 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 01:59:42] 2025-12-03 00:59:12,851 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 01:59:42] 2025-12-03 00:59:12,852 | INFO     | did not find any defunct processes belonging to 2578452
[2025-12-03 01:59:42] 2025-12-03 00:59:12,853 | INFO     | did not find any defunct processes belonging to 2578452
[2025-12-03 01:59:42] 2025-12-03 00:59:12,854 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 01:59:42] 2025-12-03 00:59:12,854 | INFO     | ready for new job
[2025-12-03 01:59:42] 2025-12-03 00:59:12,854 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 01:59:42] 2025-12-03 00:59:12,855 | INFO     | ***************************************
[2025-12-03 01:59:42] 2025-12-03 00:59:12,855 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 01:59:42] 2025-12-03 00:59:12,855 | INFO     | ***************************************
[2025-12-03 01:59:42] 2025-12-03 00:59:12,855 | INFO     | 
[2025-12-03 01:59:42] 2025-12-03 00:59:12,856 | INFO     | architecture information:
[2025-12-03 01:59:42] 2025-12-03 00:59:12,856 | INFO     | executing command: cat /etc/os-release
[2025-12-03 01:59:42] 2025-12-03 00:59:12,865 | INFO     | cat /etc/os-release:
[2025-12-03 01:59:42] NAME="CentOS Linux"
[2025-12-03 01:59:42] VERSION="7 (Core)"
[2025-12-03 01:59:42] ID="centos"
[2025-12-03 01:59:42] ID_LIKE="rhel fedora"
[2025-12-03 01:59:42] VERSION_ID="7"
[2025-12-03 01:59:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 01:59:42] ANSI_COLOR="0;31"
[2025-12-03 01:59:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 01:59:42] HOME_URL="https://www.centos.org/"
[2025-12-03 01:59:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 01:59:42] 
[2025-12-03 01:59:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 01:59:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 01:59:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 01:59:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 01:59:42] 
[2025-12-03 01:59:42] 2025-12-03 00:59:12,865 | INFO     | ***************************************
[2025-12-03 01:59:42] 2025-12-03 00:59:13,368 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-03 01:59:42] 2025-12-03 00:59:13,381 | INFO     | sufficient remaining disk space (366360920064 B)
[2025-12-03 01:59:42] 2025-12-03 00:59:13,382 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 01:59:42] 2025-12-03 00:59:13,382 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 01:59:42] 2025-12-03 00:59:13,382 | INFO     | update_server=False
[2025-12-03 01:59:42] 2025-12-03 00:59:13,382 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 01:59:42] 2025-12-03 00:59:13,382 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-03 01:59:42] 2025-12-03 00:59:13,382 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 01:59:42] 2025-12-03 00:59:13,382 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 01:59:42] 2025-12-03 00:59:13,382 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 01:59:42] 2025-12-03 00:59:13,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 01:59:42] 2025-12-03 00:59:13,382 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 01:59:42] 2025-12-03 00:59:13,531 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 01:59:42] 2025-12-03 00:59:13,531 | INFO     | aborting loop
[2025-12-03 01:59:42] 2025-12-03 00:59:13,793 | INFO     | all job control threads have been joined
[2025-12-03 01:59:42] 2025-12-03 00:59:13,993 | INFO     | all payload control threads have been joined
[2025-12-03 01:59:42] 2025-12-03 00:59:14,095 | INFO     | all data control threads have been joined
[2025-12-03 01:59:42] 2025-12-03 00:59:14,386 | INFO     | [job] retrieve thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:14,388 | INFO     | [job] queue monitor thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:14,537 | INFO     | [job] job monitor thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:14,799 | INFO     | [job] control thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:14,976 | INFO     | [data] copytool_in thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:14,999 | INFO     | [payload] control thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:15,067 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:15,101 | INFO     | [data] control thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:15,221 | INFO     | [payload] failed_post thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:15,388 | INFO     | [data] copytool_out thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:15,591 | INFO     | [job] validate thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:15,671 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:15,684 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:15,943 | INFO     | [payload] validate_post thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:16,221 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 01:59:42] 2025-12-03 00:59:20,227 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:24,082 | INFO     | job.realtimelogging is not enabled
[2025-12-03 01:59:42] 2025-12-03 00:59:25,087 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 01:59:42] 2025-12-03 00:59:36,138 | INFO     | [monitor] cgroup control has ended
[2025-12-03 01:59:42] 2025-12-03 00:59:37,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139957071484736)>', '<ExcThread(monitor, started 139956039169792)>']
[2025-12-03 01:59:42] 2025-12-03 00:59:38,508 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 01:59:42] 2025-12-03 00:59:38,508 | INFO     | [monitor] control thread has ended
[2025-12-03 01:59:42] 2025-12-03 00:59:42,829 | INFO     | all workflow threads have been joined
[2025-12-03 01:59:42] 2025-12-03 00:59:42,830 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 01:59:42] 2025-12-03 00:59:42,830 | INFO     | traces error code: 0
[2025-12-03 01:59:42] 2025-12-03 00:59:42,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 01:59:42] 2025-12-03 00:59:42,878 [wrapper] ==== pilot stdout END ====
[2025-12-03 01:59:42] 2025-12-03 00:59:42,881 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 01:59:42] 2025-12-03 00:59:42,884 [wrapper] pilotpid: 2572001
[2025-12-03 01:59:42] 2025-12-03 00:59:42,886 [wrapper] Pilot exit status: 0
[2025-12-03 01:59:42] 2025-12-03 00:59:42,894 [wrapper] pandaids: 6899449815
[2025-12-03 01:59:42] 2025-12-03 00:59:42,911 [wrapper] cleanup supervisor_pilot 2627522 2572002
[2025-12-03 01:59:42] 2025-12-03 00:59:42,913 [wrapper] Test setup, not cleaning
[2025-12-03 01:59:42] 2025-12-03 00:59:42,916 [wrapper] apfmon messages muted
[2025-12-03 01:59:42] 2025-12-03 00:59:42,918 [wrapper] ==== wrapper stdout END ====
[2025-12-03 01:59:42] 2025-12-03 00:59:42,921 [wrapper] ==== wrapper stderr END ====
[2025-12-03 01:59:42]  *** Error codes and diagnostics ***
[2025-12-03 01:59:42]     "exeErrorCode": 0,
[2025-12-03 01:59:42]     "exeErrorDiag": "",
[2025-12-03 01:59:42]     "pilotErrorCode": 0,
[2025-12-03 01:59:42]     "pilotErrorDiag": "",
[2025-12-03 01:59:42]  *** Listing of results directory ***
[2025-12-03 01:59:42] total 1293120
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-03 01:59:42] -rwx------ 1 boinc boinc     36292 Nov 27 09:49 runpilot2-wrapper.sh
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc      5112 Nov 27 09:53 queuedata.json
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc       100 Dec  2 18:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 01:59:42] -rwxr-xr-x 1 boinc boinc      7986 Dec  2 18:08 run_atlas
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc       105 Dec  2 18:08 job.xml
[2025-12-03 01:59:42] -rw-r--r-- 2 boinc boinc 408460100 Dec  2 18:08 EVNT.47483658._003317.pool.root.1
[2025-12-03 01:59:42] -rw-r--r-- 2 boinc boinc    590111 Dec  2 18:08 input.tar.gz
[2025-12-03 01:59:42] -rw-r--r-- 2 boinc boinc     15847 Dec  2 18:08 start_atlas.sh
[2025-12-03 01:59:42] drwxrwx--x 2 boinc boinc      4096 Dec  2 18:08 shared
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc         0 Dec  2 18:08 boinc_setup_complete
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc      6447 Dec  2 18:08 init_data.xml
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc         0 Dec  2 18:08 boinc_lockfile
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc      2787 Dec  2 18:08 pandaJob.out
[2025-12-03 01:59:42] -rw------- 1 boinc boinc    988852 Dec  2 18:09 agis_schedconf.cvmfs.json
[2025-12-03 01:59:42] drwx------ 5 boinc boinc      4096 Dec  2 18:09 pilot3
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc       531 Dec  3 01:54 boinc_task_state.xml
[2025-12-03 01:59:42] -rw------- 1 boinc boinc        95 Dec  3 01:58 pilot_heartbeat.json
[2025-12-03 01:59:42] -rw------- 1 boinc boinc 901505750 Dec  3 01:58 HITS.47556173._002735.pool.root.1
[2025-12-03 01:59:42] -rw------- 1 boinc boinc      1024 Dec  3 01:59 memory_monitor_summary.json
[2025-12-03 01:59:42] -rw------- 1 boinc boinc   1516240 Dec  3 01:59 agis_ddmendpoints.agis.ALL.json
[2025-12-03 01:59:42] -rw------- 1 boinc boinc   1169538 Dec  3 01:59 log.47556173._002735.job.log.tgz.1
[2025-12-03 01:59:42] -rw------- 1 boinc boinc      8556 Dec  3 01:59 heartbeat.json
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc      8192 Dec  3 01:59 boinc_mmap_file
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc        28 Dec  3 01:59 wrapper_checkpoint.txt
[2025-12-03 01:59:42] -rw------- 1 boinc boinc      4628 Dec  3 01:59 pilotlog.txt
[2025-12-03 01:59:42] -rw------- 1 boinc boinc   3973385 Dec  3 01:59 log.47556173._002735.job.log.1
[2025-12-03 01:59:42] -rw------- 1 boinc boinc       353 Dec  3 01:59 output.list
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc       620 Dec  3 01:59 runtime_log
[2025-12-03 01:59:42] -rw------- 1 boinc boinc   5160960 Dec  3 01:59 result.tar.gz
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc      8898 Dec  3 01:59 runtime_log.err
[2025-12-03 01:59:42] -rw------- 1 boinc boinc       665 Dec  3 01:59 OIxKDm0rmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRfKKDm37M94n.diag
[2025-12-03 01:59:42] -rw-r--r-- 1 boinc boinc     10650 Dec  3 01:59 stderr.txt
[2025-12-03 01:59:42] HITS file was successfully produced:
[2025-12-03 01:59:42] -rw------- 1 boinc boinc 901505750 Dec  3 01:58 shared/HITS.pool.root.1
[2025-12-03 01:59:42]  *** Contents of shared directory: ***
[2025-12-03 01:59:42] total 1284912
[2025-12-03 01:59:42] -rw-r--r-- 2 boinc boinc 408460100 Dec  2 18:08 ATLAS.root_0
[2025-12-03 01:59:42] -rw-r--r-- 2 boinc boinc    590111 Dec  2 18:08 input.tar.gz
[2025-12-03 01:59:42] -rw-r--r-- 2 boinc boinc     15847 Dec  2 18:08 start_atlas.sh
[2025-12-03 01:59:42] -rw------- 1 boinc boinc 901505750 Dec  3 01:58 HITS.pool.root.1
[2025-12-03 01:59:42] -rw------- 1 boinc boinc   5160960 Dec  3 01:59 result.tar.gz
01:59:44 (2568274): run_atlas exited; CPU time 83102.253917
01:59:44 (2568274): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN