Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:33:22 (30875): wrapper (7.7.26015): starting
09:33:22 (30875): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 09:33:22] Arguments: --nthreads 8
[2025-11-30 09:33:22] Threads: 8
[2025-11-30 09:33:22] Checking for CVMFS
[2025-11-30 09:33:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 09:33:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 09:33:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 09:33:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 09:33:23] 2.11.2.0 6427 177700 135596 153474 1 217 18405724 25165824 1964 130560 10 57649225 99.878 34367566 2337 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 09:33:23] CVMFS is ok
[2025-11-30 09:33:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 09:33:23] Checking for apptainer binary...
[2025-11-30 09:33:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 09:33:23] Running /usr/bin/apptainer --version
[2025-11-30 09:33:23] apptainer version 1.3.2-1.el7
[2025-11-30 09:33:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 09:33:24] cg-vwn308.simple-grid.lan
[2025-11-30 09:33:24] apptainer works
[2025-11-30 09:33:24] Set ATHENA_PROC_NUMBER=8
[2025-11-30 09:33:24] Set ATHENA_CORE_NUMBER=8
[2025-11-30 09:33:25] Starting ATLAS job with PandaID=6899576240
[2025-11-30 09:33:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 07:58:38]  *** The last 200 lines of the pilot log: ***
[2025-12-01 07:58:38] 2025-12-01 06:57:52,640 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 07:58:38] 2025-12-01 06:57:53,201 | INFO     | time since job start (80648s) is within the limit (172800.0s)
[2025-12-01 07:58:38] 2025-12-01 06:57:55,145 | INFO     | monitor loop #5399: job 0:6899576240 is in state 'finished'
[2025-12-01 07:58:38] 2025-12-01 06:57:55,146 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 07:58:38] 2025-12-01 06:57:55,211 | INFO     | time since job start (80650s) is within the limit (172800.0s)
[2025-12-01 07:58:38] 2025-12-01 06:57:56,460 | INFO     | PID=2282 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 07:58:38] 2025-12-01 06:57:56,460 | INFO     | .. there are 9 such processes running
[2025-12-01 07:58:38] 2025-12-01 06:57:57,465 | INFO     | time since job start (80652s) is within the limit (172800.0s)
[2025-12-01 07:58:38] 2025-12-01 06:57:57,653 | INFO     | monitor loop #5400: job 0:6899576240 is in state 'finished'
[2025-12-01 07:58:38] 2025-12-01 06:57:57,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 07:58:38] 2025-12-01 06:57:59,472 | INFO     | time since job start (80654s) is within the limit (172800.0s)
[2025-12-01 07:58:38] 2025-12-01 06:58:00,161 | INFO     | monitor loop #5401: job 0:6899576240 is in state 'finished'
[2025-12-01 07:58:38] 2025-12-01 06:58:00,162 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 07:58:38] 2025-12-01 06:58:00,659 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 07:58:38] 2025-12-01 06:58:00,660 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-12-01 07:58:38] 2025-12-01 06:58:00,662 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6899576240/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 07:58:38] 2025-12-01 06:58:00,663 | INFO     | extracted standard info from prmon json
[2025-12-01 07:58:38] 2025-12-01 06:58:00,663 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 07:58:38] 2025-12-01 06:58:00,663 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 07:58:38] 2025-12-01 06:58:00,695 | INFO     | fitting pss+swap vs Time
[2025-12-01 07:58:38] 2025-12-01 06:58:00,701 | INFO     | sum of square deviations: 713179750829.9811
[2025-12-01 07:58:38] 2025-12-01 06:58:00,762 | INFO     | sum of deviations: 1729962227651.4321
[2025-12-01 07:58:38] 2025-12-01 06:58:00,762 | INFO     | mean x: 1764531900.5871212
[2025-12-01 07:58:38] 2025-12-01 06:58:00,762 | INFO     | mean y: 2865918.6962121213
[2025-12-01 07:58:38] 2025-12-01 06:58:00,762 | INFO     | intersect: -4277364323.327908
[2025-12-01 07:58:38] 2025-12-01 06:58:00,764 | INFO     | chi2: 13.426318439942982
[2025-12-01 07:58:38] 2025-12-01 06:58:00,766 | INFO     | sum of square deviations: 705106511539.049
[2025-12-01 07:58:38] 2025-12-01 06:58:00,813 | INFO     | sum of deviations: 2169354523406.4177
[2025-12-01 07:58:38] 2025-12-01 06:58:00,813 | INFO     | mean x: 1764531748.0912547
[2025-12-01 07:58:38] 2025-12-01 06:58:00,814 | INFO     | mean y: 2874217.0798479086
[2025-12-01 07:58:38] 2025-12-01 06:58:00,814 | INFO     | intersect: -5425943793.777519
[2025-12-01 07:58:38] 2025-12-01 06:58:00,815 | INFO     | chi2: 10.217907908365499
[2025-12-01 07:58:38] 2025-12-01 06:58:00,815 | INFO     | current chi2=10.217907908365499 (change=23.896428093292776 %)
[2025-12-01 07:58:38] 2025-12-01 06:58:00,816 | INFO     | right removable region: 1314
[2025-12-01 07:58:38] 2025-12-01 06:58:00,817 | INFO     | sum of square deviations: 705105636189.049
[2025-12-01 07:58:38] 2025-12-01 06:58:00,877 | INFO     | sum of deviations: 1350235543999.4985
[2025-12-01 07:58:38] 2025-12-01 06:58:00,878 | INFO     | mean x: 1764532053.0912547
[2025-12-01 07:58:38] 2025-12-01 06:58:00,878 | INFO     | mean y: 2873086.4874524716
[2025-12-01 07:58:38] 2025-12-01 06:58:00,878 | INFO     | intersect: -3376101317.2449136
[2025-12-01 07:58:38] 2025-12-01 06:58:00,880 | INFO     | chi2: 11.192068696106304
[2025-12-01 07:58:38] 2025-12-01 06:58:00,880 | INFO     | current chi2=11.192068696106304 (change=16.640821933657087 %)
[2025-12-01 07:58:38] 2025-12-01 06:58:00,880 | INFO     | left removable region: 10
[2025-12-01 07:58:38] 2025-12-01 06:58:00,882 | INFO     | sum of square deviations: 687559162836.208
[2025-12-01 07:58:38] 2025-12-01 06:58:00,928 | INFO     | sum of deviations: 1796589341838.3005
[2025-12-01 07:58:38] 2025-12-01 06:58:00,929 | INFO     | mean x: 1764532022.595092
[2025-12-01 07:58:38] 2025-12-01 06:58:00,929 | INFO     | mean y: 2885048.0782208587
[2025-12-01 07:58:38] 2025-12-01 06:58:00,929 | INFO     | intersect: -4607830067.766901
[2025-12-01 07:58:38] 2025-12-01 06:58:00,930 | INFO     | chi2: 7.135079388414477
[2025-12-01 07:58:38] 2025-12-01 06:58:00,930 | INFO     | current memory leak: 2.61 B/s (using 1304 data points, chi2=7.14)
[2025-12-01 07:58:38] 2025-12-01 06:58:00,932 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-12-01 07:58:38] 2025-12-01 06:58:00,932 | INFO     | ..............................
[2025-12-01 07:58:38] 2025-12-01 06:58:00,932 | INFO     | . Timing measurements:
[2025-12-01 07:58:38] 2025-12-01 06:58:00,932 | INFO     | . get job = 0 s
[2025-12-01 07:58:38] 2025-12-01 06:58:00,932 | INFO     | . initial setup = 2 s
[2025-12-01 07:58:38] 2025-12-01 06:58:00,932 | INFO     | . payload setup = 10 s
[2025-12-01 07:58:38] 2025-12-01 06:58:00,932 | INFO     | . stage-in = 0 s
[2025-12-01 07:58:38] 2025-12-01 06:58:00,932 | INFO     | . payload execution = 80474 s
[2025-12-01 07:58:38] 2025-12-01 06:58:00,932 | INFO     | . stage-out = 3 s
[2025-12-01 07:58:38] 2025-12-01 06:58:00,933 | INFO     | . log creation = 0 s
[2025-12-01 07:58:38] 2025-12-01 06:58:00,933 | INFO     | ..............................
[2025-12-01 07:58:38] 2025-12-01 06:58:01,059 | INFO     | 
[2025-12-01 07:58:38] 2025-12-01 06:58:01,060 | INFO     | job summary report
[2025-12-01 07:58:38] 2025-12-01 06:58:01,060 | INFO     | --------------------------------------------------
[2025-12-01 07:58:38] 2025-12-01 06:58:01,060 | INFO     | PanDA job id: 6899576240
[2025-12-01 07:58:38] 2025-12-01 06:58:01,060 | INFO     | task id: 47556185
[2025-12-01 07:58:38] 2025-12-01 06:58:01,060 | INFO     | errors: (none)
[2025-12-01 07:58:38] 2025-12-01 06:58:01,060 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 07:58:38] 2025-12-01 06:58:01,060 | INFO     | pilot state: finished 
[2025-12-01 07:58:38] 2025-12-01 06:58:01,060 | INFO     | transexitcode: 0
[2025-12-01 07:58:38] 2025-12-01 06:58:01,060 | INFO     | exeerrorcode: 0
[2025-12-01 07:58:38] 2025-12-01 06:58:01,060 | INFO     | exeerrordiag: 
[2025-12-01 07:58:38] 2025-12-01 06:58:01,060 | INFO     | exitcode: 0
[2025-12-01 07:58:38] 2025-12-01 06:58:01,060 | INFO     | exitmsg: OK
[2025-12-01 07:58:38] 2025-12-01 06:58:01,061 | INFO     | cpuconsumptiontime: 314066 s
[2025-12-01 07:58:38] 2025-12-01 06:58:01,061 | INFO     | nevents: 1000
[2025-12-01 07:58:38] 2025-12-01 06:58:01,061 | INFO     | neventsw: 0
[2025-12-01 07:58:38] 2025-12-01 06:58:01,061 | INFO     | pid: 8799
[2025-12-01 07:58:38] 2025-12-01 06:58:01,061 | INFO     | pgrp: 8799
[2025-12-01 07:58:38] 2025-12-01 06:58:01,061 | INFO     | corecount: 8
[2025-12-01 07:58:38] 2025-12-01 06:58:01,061 | INFO     | event service: False
[2025-12-01 07:58:38] 2025-12-01 06:58:01,061 | INFO     | sizes: {0: 2284087, 1: 2284342, 2: 2284342, 9: 2284632, 12: 2284660, 80486: 2344302, 80490: 2353296, 80493: 2353352, 80637: 2353598}
[2025-12-01 07:58:38] 2025-12-01 06:58:01,061 | INFO     | --------------------------------------------------
[2025-12-01 07:58:38] 2025-12-01 06:58:01,061 | INFO     | 
[2025-12-01 07:58:38] 2025-12-01 06:58:01,061 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-12-01 07:58:38] 2025-12-01 06:58:01,481 | INFO     | time since job start (80656s) is within the limit (172800.0s)
[2025-12-01 07:58:38] 2025-12-01 06:58:01,503 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,503 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,503 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,503 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,503 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,503 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,503 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,503 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,504 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,504 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,504 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,504 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,504 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,504 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,504 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,504 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,504 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,504 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 07:58:38] 2025-12-01 06:58:01,504 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,505 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 07:58:38] 2025-12-01 06:58:01,505 | INFO     | job 6899576240 has completed (purged errors)
[2025-12-01 07:58:38] 2025-12-01 06:58:01,505 | INFO     | overall cleanup function is called
[2025-12-01 07:58:38] 2025-12-01 06:58:02,525 | INFO     | --- collectZombieJob: --- 10, [8799]
[2025-12-01 07:58:38] 2025-12-01 06:58:02,526 | INFO     | zombie collector waiting for pid 8799
[2025-12-01 07:58:38] 2025-12-01 06:58:02,526 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 07:58:38] 2025-12-01 06:58:02,526 | INFO     | collected zombie processes
[2025-12-01 07:58:38] 2025-12-01 06:58:02,526 | INFO     | will attempt to kill all subprocesses of pid=8799
[2025-12-01 07:58:38] 2025-12-01 06:58:02,632 | INFO     | process IDs to be killed: [8799] (in reverse order)
[2025-12-01 07:58:38] 2025-12-01 06:58:03,527 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 07:58:38] 2025-12-01 06:58:03,527 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 07:58:38] 2025-12-01 06:58:03,531 | INFO     | did not find any defunct processes belonging to 8799
[2025-12-01 07:58:38] 2025-12-01 06:58:03,533 | INFO     | did not find any defunct processes belonging to 8799
[2025-12-01 07:58:38] 2025-12-01 06:58:03,596 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 07:58:38] 2025-12-01 06:58:03,596 | INFO     | ready for new job
[2025-12-01 07:58:38] 2025-12-01 06:58:03,596 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 07:58:38] 2025-12-01 06:58:03,601 | INFO     | ***************************************
[2025-12-01 07:58:38] 2025-12-01 06:58:03,602 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 07:58:38] 2025-12-01 06:58:03,602 | INFO     | ***************************************
[2025-12-01 07:58:38] 2025-12-01 06:58:03,602 | INFO     | 
[2025-12-01 07:58:38] 2025-12-01 06:58:03,602 | INFO     | pilot is running in a VM
[2025-12-01 07:58:38] 2025-12-01 06:58:03,602 | INFO     | architecture information:
[2025-12-01 07:58:38] 2025-12-01 06:58:03,611 | INFO     | executing command: cat /etc/os-release
[2025-12-01 07:58:38] 2025-12-01 06:58:03,820 | INFO     | cat /etc/os-release:
[2025-12-01 07:58:38] NAME="CentOS Linux"
[2025-12-01 07:58:38] VERSION="7 (Core)"
[2025-12-01 07:58:38] ID="centos"
[2025-12-01 07:58:38] ID_LIKE="rhel fedora"
[2025-12-01 07:58:38] VERSION_ID="7"
[2025-12-01 07:58:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 07:58:38] ANSI_COLOR="0;31"
[2025-12-01 07:58:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 07:58:38] HOME_URL="https://www.centos.org/"
[2025-12-01 07:58:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 07:58:38] 
[2025-12-01 07:58:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 07:58:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 07:58:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 07:58:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 07:58:38] 
[2025-12-01 07:58:38] 2025-12-01 06:58:03,820 | INFO     | ***************************************
[2025-12-01 07:58:38] 2025-12-01 06:58:04,323 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-12-01 07:58:38] 2025-12-01 06:58:04,578 | INFO     | sufficient remaining disk space (488203354112 B)
[2025-12-01 07:58:38] 2025-12-01 06:58:04,578 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 07:58:38] 2025-12-01 06:58:04,578 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 07:58:38] 2025-12-01 06:58:04,579 | INFO     | update_server=False
[2025-12-01 07:58:38] 2025-12-01 06:58:04,579 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 07:58:38] 2025-12-01 06:58:04,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 07:58:38] 2025-12-01 06:58:04,580 | INFO     | aborting loop
[2025-12-01 07:58:38] 2025-12-01 06:58:04,777 | INFO     | all data control threads have been joined
[2025-12-01 07:58:38] 2025-12-01 06:58:05,019 | INFO     | all payload control threads have been joined
[2025-12-01 07:58:38] 2025-12-01 06:58:05,216 | INFO     | all job control threads have been joined
[2025-12-01 07:58:38] 2025-12-01 06:58:05,234 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 07:58:38] 2025-12-01 06:58:05,570 | INFO     | [monitor] cgroup control has ended
[2025-12-01 07:58:38] 2025-12-01 06:58:05,584 | INFO     | [job] retrieve thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:05,586 | INFO     | [job] job monitor thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:05,783 | INFO     | [data] control thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:05,969 | INFO     | [job] validate thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:06,025 | INFO     | [payload] control thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:06,076 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 07:58:38] 2025-12-01 06:58:06,085 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:06,133 | INFO     | [data] copytool_in thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:06,184 | INFO     | [payload] failed_post thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:06,222 | INFO     | [job] control thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:06,251 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:07,073 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:07,082 | INFO     | [job] queue monitor thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:07,181 | INFO     | [payload] validate_post thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:07,241 | INFO     | [data] copytool_out thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:07,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 07:58:38] 2025-12-01 06:58:11,646 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:15,213 | INFO     | job.realtimelogging is not enabled
[2025-12-01 07:58:38] 2025-12-01 06:58:16,219 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 07:58:38] 2025-12-01 06:58:17,697 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139700275001152)>', '<ExcThread(monitor, started 139699851097856)>']
[2025-12-01 07:58:38] 2025-12-01 06:58:22,723 | INFO     | all workflow threads have been joined
[2025-12-01 07:58:38] 2025-12-01 06:58:22,724 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 07:58:38] 2025-12-01 06:58:22,724 | INFO     | traces error code: 0
[2025-12-01 07:58:38] 2025-12-01 06:58:22,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 07:58:38] 2025-12-01 06:58:34,636 | INFO     | PID=2282 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 07:58:38] 2025-12-01 06:58:34,636 | INFO     | .. there are 9 such processes running
[2025-12-01 07:58:38] 2025-12-01 06:58:34,637 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 07:58:38] 2025-12-01 06:58:34,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 07:58:38] 2025-12-01 06:58:34,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 07:58:38] 2025-12-01 06:58:34,637 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 07:58:38] 2025-12-01 06:58:34,637 | CRITICAL | thread 'MainThread' is not alive
[2025-12-01 07:58:38] 2025-12-01 06:58:34,638 | INFO     | [monitor] control thread has ended
[2025-12-01 07:58:38] 2025-12-01 06:58:34,998 [wrapper] ==== pilot stdout END ====
[2025-12-01 07:58:38] 2025-12-01 06:58:35,058 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 07:58:38] 2025-12-01 06:58:35,120 [wrapper] pilotpid: 2282
[2025-12-01 07:58:38] 2025-12-01 06:58:35,159 [wrapper] Pilot exit status: 0
[2025-12-01 07:58:38] 2025-12-01 06:58:35,480 [wrapper] pandaids: 6899576240
[2025-12-01 07:58:38] 2025-12-01 06:58:36,377 [wrapper] cleanup supervisor_pilot 24249 2283
[2025-12-01 07:58:38] 2025-12-01 06:58:36,451 [wrapper] Test setup, not cleaning
[2025-12-01 07:58:38] 2025-12-01 06:58:36,535 [wrapper] apfmon messages muted
[2025-12-01 07:58:38] 2025-12-01 06:58:36,637 [wrapper] ==== wrapper stdout END ====
[2025-12-01 07:58:38] 2025-12-01 06:58:36,731 [wrapper] ==== wrapper stderr END ====
[2025-12-01 07:58:38]  *** Error codes and diagnostics ***
[2025-12-01 07:58:38]     "exeErrorCode": 0,
[2025-12-01 07:58:38]     "exeErrorDiag": "",
[2025-12-01 07:58:38]     "pilotErrorCode": 0,
[2025-12-01 07:58:38]     "pilotErrorDiag": "",
[2025-12-01 07:58:38]  *** Listing of results directory ***
[2025-12-01 07:58:38] total 1324084
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-01 07:58:38] -rwx------. 1 boinc boinc     36292 Nov 27 09:47 runpilot2-wrapper.sh
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc      5112 Nov 27 09:49 queuedata.json
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc       100 Nov 30 09:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 07:58:38] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 09:33 run_atlas
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc       105 Nov 30 09:33 job.xml
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc      6391 Nov 30 09:33 init_data.xml
[2025-12-01 07:58:38] -rw-r--r--. 2 boinc boinc 407991846 Nov 30 09:33 EVNT.47483658._004332.pool.root.1
[2025-12-01 07:58:38] -rw-r--r--. 2 boinc boinc     15847 Nov 30 09:33 start_atlas.sh
[2025-12-01 07:58:38] drwxrwx--x. 2 boinc boinc        68 Nov 30 09:33 shared
[2025-12-01 07:58:38] -rw-r--r--. 2 boinc boinc    590111 Nov 30 09:33 input.tar.gz
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc         0 Nov 30 09:33 boinc_lockfile
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc      2786 Nov 30 09:33 pandaJob.out
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc    991788 Nov 30 09:33 agis_schedconf.cvmfs.json
[2025-12-01 07:58:38] drwx------. 5 boinc boinc      4096 Nov 30 09:33 pilot3
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc       533 Dec  1 07:36 boinc_task_state.xml
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc 917669503 Dec  1 07:54 HITS.47556185._000957.pool.root.1
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc      1032 Dec  1 07:55 memory_monitor_summary.json
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc   1516240 Dec  1 07:55 agis_ddmendpoints.agis.ALL.json
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc   2417040 Dec  1 07:55 log.47556185._000957.job.log.tgz.1
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc      8623 Dec  1 07:58 heartbeat.json
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc      8192 Dec  1 07:58 boinc_mmap_file
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc        29 Dec  1 07:58 wrapper_checkpoint.txt
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc        95 Dec  1 07:58 pilot_heartbeat.json
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc       889 Dec  1 07:58 pilotlog.txt
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc  10728794 Dec  1 07:58 log.47556185._000957.job.log.1
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc       353 Dec  1 07:58 output.list
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc       620 Dec  1 07:58 runtime_log
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc  13168640 Dec  1 07:58 result.tar.gz
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc      8817 Dec  1 07:58 runtime_log.err
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc       662 Dec  1 07:58 bkLODm3pmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcdKKDmgSXN5m.diag
[2025-12-01 07:58:38] -rw-r--r--. 1 boinc boinc     21420 Dec  1 07:58 stderr.txt
[2025-12-01 07:58:38] HITS file was successfully produced:
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc 917669503 Dec  1 07:54 shared/HITS.pool.root.1
[2025-12-01 07:58:38]  *** Contents of shared directory: ***
[2025-12-01 07:58:38] total 1308052
[2025-12-01 07:58:38] -rw-r--r--. 2 boinc boinc 407991846 Nov 30 09:33 ATLAS.root_0
[2025-12-01 07:58:38] -rw-r--r--. 2 boinc boinc     15847 Nov 30 09:33 start_atlas.sh
[2025-12-01 07:58:38] -rw-r--r--. 2 boinc boinc    590111 Nov 30 09:33 input.tar.gz
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc 917669503 Dec  1 07:54 HITS.pool.root.1
[2025-12-01 07:58:38] -rw-------. 1 boinc boinc  13168640 Dec  1 07:58 result.tar.gz
07:58:40 (30875): run_atlas exited; CPU time 314626.772654
07:58:40 (30875): called boinc_finish(0)

</stderr_txt>
]]>

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