Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:00:07 (2525): wrapper (7.7.26015): starting
23:00:07 (2525): wrapper: running run_atlas (--nthreads 8)
[2025-11-30 23:00:08] Arguments: --nthreads 8
[2025-11-30 23:00:08] Threads: 8
[2025-11-30 23:00:08] Checking for CVMFS
[2025-11-30 23:00:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-30 23:00:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-30 23:00:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-30 23:00:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-30 23:00:10] 2.11.2.0 942 178507 128648 153494 2 85 19623204 25165825 2504 130560 12 62493483 99.903 32705795 2277 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-30 23:00:10] CVMFS is ok
[2025-11-30 23:00:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-30 23:00:10] Checking for apptainer binary...
[2025-11-30 23:00:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-30 23:00:10] Running /usr/bin/apptainer --version
[2025-11-30 23:00:10] apptainer version 1.3.2-1.el7
[2025-11-30 23:00:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-30 23:00:32] cg-vwn460.simple-grid.lan
[2025-11-30 23:00:32] apptainer works
[2025-11-30 23:00:32] Set ATHENA_PROC_NUMBER=8
[2025-11-30 23:00:32] Set ATHENA_CORE_NUMBER=8
[2025-11-30 23:00:33] Starting ATLAS job with PandaID=6899596462
[2025-11-30 23:00:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 20:46:48]  *** The last 200 lines of the pilot log: ***
[2025-12-01 20:46:48] 2025-12-01 19:45:42,444 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 20:46:48] 2025-12-01 19:45:42,780 | INFO     | time since job start (78080s) is within the limit (172800.0s)
[2025-12-01 20:46:48] 2025-12-01 19:45:44,786 | INFO     | time since job start (78082s) is within the limit (172800.0s)
[2025-12-01 20:46:48] 2025-12-01 19:45:44,952 | INFO     | monitor loop #5244: job 0:6899596462 is in state 'finished'
[2025-12-01 20:46:48] 2025-12-01 19:45:44,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 20:46:48] 2025-12-01 19:45:46,793 | INFO     | time since job start (78084s) is within the limit (172800.0s)
[2025-12-01 20:46:48] 2025-12-01 19:45:47,461 | INFO     | monitor loop #5245: job 0:6899596462 is in state 'finished'
[2025-12-01 20:46:48] 2025-12-01 19:45:47,461 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 20:46:48] 2025-12-01 19:45:48,801 | INFO     | time since job start (78086s) is within the limit (172800.0s)
[2025-12-01 20:46:48] 2025-12-01 19:45:49,966 | INFO     | monitor loop #5246: job 0:6899596462 is in state 'finished'
[2025-12-01 20:46:48] 2025-12-01 19:45:49,966 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 20:46:48] 2025-12-01 19:45:50,817 | INFO     | time since job start (78088s) is within the limit (172800.0s)
[2025-12-01 20:46:48] 2025-12-01 19:45:52,472 | INFO     | monitor loop #5247: job 0:6899596462 is in state 'finished'
[2025-12-01 20:46:48] 2025-12-01 19:45:52,472 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 20:46:48] 2025-12-01 19:45:52,825 | INFO     | time since job start (78090s) is within the limit (172800.0s)
[2025-12-01 20:46:48] 2025-12-01 19:45:53,858 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 20:46:48] 2025-12-01 19:45:53,859 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-12-01 20:46:48] 2025-12-01 19:45:53,860 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6899596462/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 20:46:48] 2025-12-01 19:45:53,861 | INFO     | extracted standard info from prmon json
[2025-12-01 20:46:48] 2025-12-01 19:45:53,861 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 20:46:48] 2025-12-01 19:45:53,861 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 20:46:48] 2025-12-01 19:45:53,882 | INFO     | fitting pss+swap vs Time
[2025-12-01 20:46:48] 2025-12-01 19:45:53,884 | INFO     | sum of square deviations: 636670399366.5708
[2025-12-01 20:46:48] 2025-12-01 19:45:53,928 | INFO     | sum of deviations: 2295309782548.4243
[2025-12-01 20:46:48] 2025-12-01 19:45:53,928 | INFO     | mean x: 1764579504.0519276
[2025-12-01 20:46:48] 2025-12-01 19:45:53,928 | INFO     | mean y: 2831126.64516129
[2025-12-01 20:46:48] 2025-12-01 19:45:53,928 | INFO     | intersect: -6358791153.52441
[2025-12-01 20:46:48] 2025-12-01 19:45:53,930 | INFO     | chi2: 22.50092854237569
[2025-12-01 20:46:48] 2025-12-01 19:45:53,931 | INFO     | sum of square deviations: 629186508678.5177
[2025-12-01 20:46:48] 2025-12-01 19:45:53,971 | INFO     | sum of deviations: 2733363829318.252
[2025-12-01 20:46:48] 2025-12-01 19:45:53,972 | INFO     | mean x: 1764579351.5560822
[2025-12-01 20:46:48] 2025-12-01 19:45:53,972 | INFO     | mean y: 2840050.4399684044
[2025-12-01 20:46:48] 2025-12-01 19:45:53,972 | INFO     | intersect: -7662990839.093106
[2025-12-01 20:46:48] 2025-12-01 19:45:53,973 | INFO     | chi2: 18.962601750383527
[2025-12-01 20:46:48] 2025-12-01 19:45:53,973 | INFO     | current chi2=18.962601750383527 (change=15.725247895118994 %)
[2025-12-01 20:46:48] 2025-12-01 19:45:53,974 | INFO     | right removable region: 1265
[2025-12-01 20:46:48] 2025-12-01 19:45:53,975 | INFO     | sum of square deviations: 629185693108.5183
[2025-12-01 20:46:48] 2025-12-01 19:45:54,016 | INFO     | sum of deviations: 1771010971862.0647
[2025-12-01 20:46:48] 2025-12-01 19:45:54,016 | INFO     | mean x: 1764579656.5560822
[2025-12-01 20:46:48] 2025-12-01 19:45:54,016 | INFO     | mean y: 2841808.5695102685
[2025-12-01 20:46:48] 2025-12-01 19:45:54,016 | INFO     | intersect: -4964038345.754688
[2025-12-01 20:46:48] 2025-12-01 19:45:54,018 | INFO     | chi2: 17.961632322810733
[2025-12-01 20:46:48] 2025-12-01 19:45:54,018 | INFO     | current chi2=17.961632322810733 (change=20.173817320543737 %)
[2025-12-01 20:46:48] 2025-12-01 19:45:54,018 | INFO     | left removable region: 10
[2025-12-01 20:46:48] 2025-12-01 19:45:54,020 | INFO     | sum of square deviations: 612927265160.6422
[2025-12-01 20:46:48] 2025-12-01 19:45:54,059 | INFO     | sum of deviations: 1855211401652.0354
[2025-12-01 20:46:48] 2025-12-01 19:45:54,059 | INFO     | mean x: 1764579626.0653386
[2025-12-01 20:46:48] 2025-12-01 19:45:54,059 | INFO     | mean y: 2861971.7800796814
[2025-12-01 20:46:48] 2025-12-01 19:45:54,060 | INFO     | intersect: -5338176724.7793
[2025-12-01 20:46:48] 2025-12-01 19:45:54,061 | INFO     | chi2: 10.409122741634349
[2025-12-01 20:46:48] 2025-12-01 19:45:54,061 | INFO     | current memory leak: 3.03 B/s (using 1255 data points, chi2=10.41)
[2025-12-01 20:46:48] 2025-12-01 19:45:54,062 | INFO     | could have reported an average CPU frequency of 2250 MHz (43 samples)
[2025-12-01 20:46:48] 2025-12-01 19:45:54,062 | INFO     | ..............................
[2025-12-01 20:46:48] 2025-12-01 19:45:54,062 | INFO     | . Timing measurements:
[2025-12-01 20:46:48] 2025-12-01 19:45:54,062 | INFO     | . get job = 0 s
[2025-12-01 20:46:48] 2025-12-01 19:45:54,063 | INFO     | . initial setup = 9 s
[2025-12-01 20:46:48] 2025-12-01 19:45:54,063 | INFO     | . payload setup = 156 s
[2025-12-01 20:46:48] 2025-12-01 19:45:54,063 | INFO     | . stage-in = 0 s
[2025-12-01 20:46:48] 2025-12-01 19:45:54,063 | INFO     | . payload execution = 77622 s
[2025-12-01 20:46:48] 2025-12-01 19:45:54,063 | INFO     | . stage-out = 7 s
[2025-12-01 20:46:48] 2025-12-01 19:45:54,063 | INFO     | . log creation = 2 s
[2025-12-01 20:46:48] 2025-12-01 19:45:54,063 | INFO     | ..............................
[2025-12-01 20:46:48] 2025-12-01 19:45:54,627 | INFO     | 
[2025-12-01 20:46:48] 2025-12-01 19:45:54,628 | INFO     | job summary report
[2025-12-01 20:46:48] 2025-12-01 19:45:54,628 | INFO     | --------------------------------------------------
[2025-12-01 20:46:48] 2025-12-01 19:45:54,628 | INFO     | PanDA job id: 6899596462
[2025-12-01 20:46:48] 2025-12-01 19:45:54,628 | INFO     | task id: 47556185
[2025-12-01 20:46:48] 2025-12-01 19:45:54,628 | INFO     | errors: (none)
[2025-12-01 20:46:48] 2025-12-01 19:45:54,628 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 20:46:48] 2025-12-01 19:45:54,628 | INFO     | pilot state: finished 
[2025-12-01 20:46:48] 2025-12-01 19:45:54,628 | INFO     | transexitcode: 0
[2025-12-01 20:46:48] 2025-12-01 19:45:54,628 | INFO     | exeerrorcode: 0
[2025-12-01 20:46:48] 2025-12-01 19:45:54,628 | INFO     | exeerrordiag: 
[2025-12-01 20:46:48] 2025-12-01 19:45:54,629 | INFO     | exitcode: 0
[2025-12-01 20:46:48] 2025-12-01 19:45:54,629 | INFO     | exitmsg: OK
[2025-12-01 20:46:48] 2025-12-01 19:45:54,629 | INFO     | cpuconsumptiontime: 290699 s
[2025-12-01 20:46:48] 2025-12-01 19:45:54,629 | INFO     | nevents: 1000
[2025-12-01 20:46:48] 2025-12-01 19:45:54,629 | INFO     | neventsw: 0
[2025-12-01 20:46:48] 2025-12-01 19:45:54,629 | INFO     | pid: 12907
[2025-12-01 20:46:48] 2025-12-01 19:45:54,629 | INFO     | pgrp: 12907
[2025-12-01 20:46:48] 2025-12-01 19:45:54,629 | INFO     | corecount: 8
[2025-12-01 20:46:48] 2025-12-01 19:45:54,629 | INFO     | event service: False
[2025-12-01 20:46:48] 2025-12-01 19:45:54,629 | INFO     | sizes: {0: 2283482, 1: 2284083, 2: 2284366, 13: 2284366, 24: 2284422, 34: 2284450, 45: 2284606, 56: 2284634, 67: 2284662, 77: 2284690, 88: 2284746, 99: 2285054, 10
[2025-12-01 20:46:48] 2025-12-01 19:45:54,629 | INFO     | --------------------------------------------------
[2025-12-01 20:46:48] 2025-12-01 19:45:54,629 | INFO     | 
[2025-12-01 20:46:48] 2025-12-01 19:45:54,630 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-01 20:46:48] 2025-12-01 19:45:54,832 | INFO     | time since job start (78092s) is within the limit (172800.0s)
[2025-12-01 20:46:48] 2025-12-01 19:45:55,198 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,198 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,198 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,198 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,198 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,198 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,199 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,199 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,199 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,199 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,199 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,199 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,199 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,199 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,199 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,200 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,200 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,200 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 20:46:48] 2025-12-01 19:45:55,200 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,200 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 20:46:48] 2025-12-01 19:45:55,200 | INFO     | job 6899596462 has completed (purged errors)
[2025-12-01 20:46:48] 2025-12-01 19:45:55,200 | INFO     | overall cleanup function is called
[2025-12-01 20:46:48] 2025-12-01 19:45:56,220 | INFO     | --- collectZombieJob: --- 10, [12907]
[2025-12-01 20:46:48] 2025-12-01 19:45:56,220 | INFO     | zombie collector waiting for pid 12907
[2025-12-01 20:46:48] 2025-12-01 19:45:56,220 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 20:46:48] 2025-12-01 19:45:56,220 | INFO     | collected zombie processes
[2025-12-01 20:46:48] 2025-12-01 19:45:56,220 | INFO     | will attempt to kill all subprocesses of pid=12907
[2025-12-01 20:46:48] 2025-12-01 19:45:56,348 | INFO     | process IDs to be killed: [12907] (in reverse order)
[2025-12-01 20:46:48] 2025-12-01 19:45:57,233 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 20:46:48] 2025-12-01 19:45:57,233 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 20:46:48] 2025-12-01 19:45:57,237 | INFO     | did not find any defunct processes belonging to 12907
[2025-12-01 20:46:48] 2025-12-01 19:45:57,239 | INFO     | did not find any defunct processes belonging to 12907
[2025-12-01 20:46:48] 2025-12-01 19:45:57,300 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 20:46:48] 2025-12-01 19:45:57,300 | INFO     | ready for new job
[2025-12-01 20:46:48] 2025-12-01 19:45:57,300 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 20:46:48] 2025-12-01 19:45:57,305 | INFO     | ***************************************
[2025-12-01 20:46:48] 2025-12-01 19:45:57,305 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 20:46:48] 2025-12-01 19:45:57,305 | INFO     | ***************************************
[2025-12-01 20:46:48] 2025-12-01 19:45:57,305 | INFO     | 
[2025-12-01 20:46:48] 2025-12-01 19:45:57,306 | INFO     | pilot is running in a VM
[2025-12-01 20:46:48] 2025-12-01 19:45:57,306 | INFO     | architecture information:
[2025-12-01 20:46:48] 2025-12-01 19:45:57,320 | INFO     | executing command: cat /etc/os-release
[2025-12-01 20:46:48] 2025-12-01 19:45:57,618 | INFO     | cat /etc/os-release:
[2025-12-01 20:46:48] NAME="CentOS Linux"
[2025-12-01 20:46:48] VERSION="7 (Core)"
[2025-12-01 20:46:48] ID="centos"
[2025-12-01 20:46:48] ID_LIKE="rhel fedora"
[2025-12-01 20:46:48] VERSION_ID="7"
[2025-12-01 20:46:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 20:46:48] ANSI_COLOR="0;31"
[2025-12-01 20:46:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 20:46:48] HOME_URL="https://www.centos.org/"
[2025-12-01 20:46:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 20:46:48] 
[2025-12-01 20:46:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 20:46:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 20:46:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 20:46:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 20:46:48] 
[2025-12-01 20:46:48] 2025-12-01 19:45:57,618 | INFO     | ***************************************
[2025-12-01 20:46:48] 2025-12-01 19:45:58,121 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-01 20:46:48] 2025-12-01 19:45:58,328 | INFO     | sufficient remaining disk space (488214888448 B)
[2025-12-01 20:46:48] 2025-12-01 19:45:58,329 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 20:46:48] 2025-12-01 19:45:58,329 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 20:46:48] 2025-12-01 19:45:58,329 | INFO     | update_server=False
[2025-12-01 20:46:48] 2025-12-01 19:45:58,329 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 20:46:48] 2025-12-01 19:45:58,329 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 20:46:48] 2025-12-01 19:45:58,455 | INFO     | all payload control threads have been joined
[2025-12-01 20:46:48] 2025-12-01 19:45:58,493 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 20:46:48] 2025-12-01 19:45:58,493 | INFO     | aborting loop
[2025-12-01 20:46:48] 2025-12-01 19:45:58,871 | INFO     | all data control threads have been joined
[2025-12-01 20:46:48] 2025-12-01 19:45:59,182 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 20:46:48] 2025-12-01 19:45:59,335 | INFO     | [job] retrieve thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:45:59,363 | INFO     | [payload] failed_post thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:45:59,461 | INFO     | [payload] control thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:45:59,470 | INFO     | all job control threads have been joined
[2025-12-01 20:46:48] 2025-12-01 19:45:59,499 | INFO     | [job] job monitor thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:45:59,763 | INFO     | [data] copytool_in thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:45:59,877 | INFO     | [data] control thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:46:00,188 | INFO     | [job] queue monitor thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:46:00,261 | INFO     | [job] validate thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:46:00,269 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:46:00,295 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:46:00,337 | INFO     | [data] copytool_out thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:46:00,476 | INFO     | [job] control thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:46:00,610 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:46:00,778 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:46:00,788 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 20:46:48] 2025-12-01 19:46:00,837 | INFO     | [payload] validate_post thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:46:04,797 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 20:46:48] 2025-12-01 19:46:27,974 | INFO     | PID=6332 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 20:46:48] 2025-12-01 19:46:27,974 | INFO     | .. there are 9 such processes running
[2025-12-01 20:46:48] 2025-12-01 19:46:27,974 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 20:46:48] 2025-12-01 19:46:27,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 20:46:48] 2025-12-01 19:46:27,974 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 20:46:48] 2025-12-01 19:46:38,648 | INFO     | [monitor] cgroup control has ended
[2025-12-01 20:46:48] 2025-12-01 19:46:39,348 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139825206654784)>', '<ExcThread(monitor, started 139824891664128)>']
[2025-12-01 20:46:48] 2025-12-01 19:46:40,044 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 20:46:48] 2025-12-01 19:46:40,045 | INFO     | [monitor] control thread has ended
[2025-12-01 20:46:48] 2025-12-01 19:46:44,373 | INFO     | all workflow threads have been joined
[2025-12-01 20:46:48] 2025-12-01 19:46:44,374 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 20:46:48] 2025-12-01 19:46:44,374 | INFO     | traces error code: 0
[2025-12-01 20:46:48] 2025-12-01 19:46:44,374 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 20:46:48] 2025-12-01 19:46:44,566 [wrapper] ==== pilot stdout END ====
[2025-12-01 20:46:48] 2025-12-01 19:46:44,582 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 20:46:48] 2025-12-01 19:46:44,608 [wrapper] pilotpid: 6332
[2025-12-01 20:46:48] 2025-12-01 19:46:44,657 [wrapper] Pilot exit status: 0
[2025-12-01 20:46:48] 2025-12-01 19:46:44,970 [wrapper] pandaids: 6899596462
[2025-12-01 20:46:48] 2025-12-01 19:46:45,628 [wrapper] cleanup supervisor_pilot  4805 6333
[2025-12-01 20:46:48] 2025-12-01 19:46:45,700 [wrapper] Test setup, not cleaning
[2025-12-01 20:46:48] 2025-12-01 19:46:45,746 [wrapper] apfmon messages muted
[2025-12-01 20:46:48] 2025-12-01 19:46:45,831 [wrapper] ==== wrapper stdout END ====
[2025-12-01 20:46:48] 2025-12-01 19:46:45,877 [wrapper] ==== wrapper stderr END ====
[2025-12-01 20:46:48]  *** Error codes and diagnostics ***
[2025-12-01 20:46:48]     "exeErrorCode": 0,
[2025-12-01 20:46:48]     "exeErrorDiag": "",
[2025-12-01 20:46:48]     "pilotErrorCode": 0,
[2025-12-01 20:46:48]     "pilotErrorDiag": "",
[2025-12-01 20:46:48]  *** Listing of results directory ***
[2025-12-01 20:46:48] total 1315268
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-01 20:46:48] -rwx------. 1 boinc boinc     36292 Nov 27 09:47 runpilot2-wrapper.sh
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc      5112 Nov 27 09:49 queuedata.json
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc       100 Nov 30 23:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 20:46:48] -rwxr-xr-x. 1 boinc boinc      7986 Nov 30 23:00 run_atlas
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc       105 Nov 30 23:00 job.xml
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc      6392 Nov 30 23:00 init_data.xml
[2025-12-01 20:46:48] -rw-r--r--. 2 boinc boinc 406821485 Nov 30 23:00 EVNT.47483658._004342.pool.root.1
[2025-12-01 20:46:48] -rw-r--r--. 2 boinc boinc     15847 Nov 30 23:00 start_atlas.sh
[2025-12-01 20:46:48] drwxrwx--x. 2 boinc boinc        68 Nov 30 23:00 shared
[2025-12-01 20:46:48] -rw-r--r--. 2 boinc boinc    590109 Nov 30 23:00 input.tar.gz
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc         0 Nov 30 23:00 boinc_lockfile
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc      2784 Nov 30 23:00 pandaJob.out
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc    993245 Nov 30 23:04 agis_schedconf.cvmfs.json
[2025-12-01 20:46:48] drwx------. 5 boinc boinc      4096 Nov 30 23:04 pilot3
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc       533 Dec  1 20:22 boinc_task_state.xml
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc 910647076 Dec  1 20:42 HITS.47556185._001051.pool.root.1
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc      1030 Dec  1 20:44 memory_monitor_summary.json
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc   1516240 Dec  1 20:44 agis_ddmendpoints.agis.ALL.json
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc   2366809 Dec  1 20:44 log.47556185._001051.job.log.tgz.1
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc        95 Dec  1 20:45 pilot_heartbeat.json
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc      8623 Dec  1 20:45 heartbeat.json
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc      8192 Dec  1 20:46 boinc_mmap_file
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc        29 Dec  1 20:46 wrapper_checkpoint.txt
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc      4883 Dec  1 20:46 pilotlog.txt
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc  10366553 Dec  1 20:46 log.47556185._001051.job.log.1
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc       353 Dec  1 20:46 output.list
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc       620 Dec  1 20:46 runtime_log
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc  12748800 Dec  1 20:46 result.tar.gz
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc      8817 Dec  1 20:46 runtime_log.err
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc       662 Dec  1 20:46 CBMLDm4pmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAeKKDmeohnLm.diag
[2025-12-01 20:46:48] -rw-r--r--. 1 boinc boinc     21436 Dec  1 20:46 stderr.txt
[2025-12-01 20:46:48] HITS file was successfully produced:
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc 910647076 Dec  1 20:42 shared/HITS.pool.root.1
[2025-12-01 20:46:48]  *** Contents of shared directory: ***
[2025-12-01 20:46:48] total 1299640
[2025-12-01 20:46:48] -rw-r--r--. 2 boinc boinc 406821485 Nov 30 23:00 ATLAS.root_0
[2025-12-01 20:46:48] -rw-r--r--. 2 boinc boinc     15847 Nov 30 23:00 start_atlas.sh
[2025-12-01 20:46:48] -rw-r--r--. 2 boinc boinc    590109 Nov 30 23:00 input.tar.gz
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc 910647076 Dec  1 20:42 HITS.pool.root.1
[2025-12-01 20:46:48] -rw-------. 1 boinc boinc  12748800 Dec  1 20:46 result.tar.gz
20:46:50 (2525): run_atlas exited; CPU time 291186.988025
20:46:50 (2525): called boinc_finish(0)

</stderr_txt>
]]>

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