Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:27:41 (2836499): wrapper (7.7.26015): starting
02:27:41 (2836499): wrapper: running run_atlas (--nthreads 3)
[2025-11-29 02:27:41] Arguments: --nthreads 3
[2025-11-29 02:27:41] Threads: 3
[2025-11-29 02:27:41] Checking for CVMFS
[2025-11-29 02:27:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 02:27:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 02:27:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 02:27:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 02:27:42] 2.9.2.0 2504167 310 65492 153425 2 88 36487653 36864000 0 130560 0 976237 99.998 10733 821 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-29 02:27:42] CVMFS is ok
[2025-11-29 02:27:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 02:27:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-29 02:27:42] Further information can be found at the LHC@home message board.
[2025-11-29 02:27:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 02:27:42] Checking for apptainer binary...
[2025-11-29 02:27:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 02:27:42] Running /usr/bin/apptainer --version
[2025-11-29 02:27:42] apptainer version 1.4.1-1.1
[2025-11-29 02:27:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 02:27:42] thA335
[2025-11-29 02:27:42] apptainer works
[2025-11-29 02:27:42] Set ATHENA_PROC_NUMBER=3
[2025-11-29 02:27:42] Set ATHENA_CORE_NUMBER=3
[2025-11-29 02:27:42] Starting ATLAS job with PandaID=6899792337
[2025-11-29 02:27:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 02:32:00]  *** The last 200 lines of the pilot log: ***
[2025-11-29 02:32:00] 2025-11-29 01:31:12,759 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 02:32:00] 2025-11-29 01:31:12,759 | INFO     | update_server=False
[2025-11-29 02:32:00] 2025-11-29 01:31:12,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 02:32:00] 2025-11-29 01:31:12,759 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 02:32:00] 2025-11-29 01:31:12,760 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 02:32:00] 2025-11-29 01:31:12,760 | INFO     | aborting loop
[2025-11-29 02:32:00] 2025-11-29 01:31:13,409 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 02:32:00] 2025-11-29 01:31:13,525 | INFO     | all job control threads have been joined
[2025-11-29 02:32:00] 2025-11-29 01:31:13,649 | INFO     | all data control threads have been joined
[2025-11-29 02:32:00] 2025-11-29 01:31:13,764 | INFO     | [job] job monitor thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:13,765 | INFO     | [job] queue monitor thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:13,765 | INFO     | [job] retrieve thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:13,902 | INFO     | [payload] failed_post thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:14,080 | INFO     | all payload control threads have been joined
[2025-11-29 02:32:00] 2025-11-29 01:31:14,460 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:14,532 | INFO     | [job] control thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:14,655 | INFO     | [data] control thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:14,672 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:14,969 | INFO     | [payload] validate_post thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:15,039 | INFO     | [job] validate thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:15,086 | INFO     | [payload] control thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:15,128 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:15,160 | INFO     | [data] copytool_in thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:15,173 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:15,416 | INFO     | [data] copytool_out thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:15,719 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 02:32:00] 2025-11-29 01:31:19,727 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 02:32:00] 2025-11-29 01:31:42,859 | INFO     | PID=2840231 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 02:32:00] 2025-11-29 01:31:42,859 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 02:32:00] 2025-11-29 01:31:42,859 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 02:32:00] 2025-11-29 01:31:42,859 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 02:32:00] 2025-11-29 01:31:53,663 | INFO     | [monitor] cgroup control has ended
[2025-11-29 02:32:00] 2025-11-29 01:31:55,565 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139788355258176)>', '<ExcThread(monitor, started 139787553990400)>']
[2025-11-29 02:32:00] 2025-11-29 01:31:55,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 02:32:00] 2025-11-29 01:31:55,929 | INFO     | [monitor] control thread has ended
[2025-11-29 02:32:00] 2025-11-29 01:32:00,591 | INFO     | all workflow threads have been joined
[2025-11-29 02:32:00] 2025-11-29 01:32:00,591 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 02:32:00] 2025-11-29 01:32:00,592 | INFO     | traces error code: 0
[2025-11-29 02:32:00] 2025-11-29 01:32:00,592 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 02:32:00] 2025-11-29 01:32:00,638 [wrapper] ==== pilot stdout END ====
[2025-11-29 02:32:00] 2025-11-29 01:32:00,641 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 02:32:00] 2025-11-29 01:32:00,644 [wrapper] pilotpid: 2840231
[2025-11-29 02:32:00] 2025-11-29 01:32:00,647 [wrapper] Pilot exit status: 0
[2025-11-29 02:32:00] 2025-11-29 01:32:00,654 [wrapper] pandaids: 6899792337
[2025-11-29 02:32:00] 2025-11-29 01:32:00,671 [wrapper] cleanup supervisor_pilot 2840237 2840232
[2025-11-29 02:32:00] 2025-11-29 01:32:00,674 [wrapper] Test setup, not cleaning
[2025-11-29 02:32:00] 2025-11-29 01:32:00,677 [wrapper] apfmon messages muted
[2025-11-29 02:32:00] 2025-11-29 01:32:00,680 [wrapper] ==== wrapper stdout END ====
[2025-11-29 02:32:00] 2025-11-29 01:32:00,683 [wrapper] ==== wrapper stderr END ====
[2025-11-29 02:32:00]  *** Error codes and diagnostics ***
[2025-11-29 02:32:00]     "exeErrorCode": 65,
[2025-11-29 02:32:00]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-29 02:32:00]     "pilotErrorCode": 1305,
[2025-11-29 02:32:00]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-29 02:32:00]  *** Listing of results directory ***
[2025-11-29 02:32:00] total 405264
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-11-29 02:32:00] -rwx------ 1 boinc boinc     36292 Nov 27 09:49 runpilot2-wrapper.sh
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc      5112 Nov 27 09:52 queuedata.json
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc       100 Nov 29 02:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 02:32:00] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 02:27 run_atlas
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc       105 Nov 29 02:27 job.xml
[2025-11-29 02:32:00] -rw-r--r-- 2 boinc boinc 410795266 Nov 29 02:27 EVNT.47483658._002801.pool.root.1
[2025-11-29 02:32:00] -rw-r--r-- 2 boinc boinc    590110 Nov 29 02:27 input.tar.gz
[2025-11-29 02:32:00] -rw-r--r-- 2 boinc boinc     15847 Nov 29 02:27 start_atlas.sh
[2025-11-29 02:32:00] drwxrwx--x 2 boinc boinc      4096 Nov 29 02:27 shared
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc         0 Nov 29 02:27 boinc_setup_complete
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc      6196 Nov 29 02:27 init_data.xml
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc         0 Nov 29 02:27 boinc_lockfile
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc      2787 Nov 29 02:27 pandaJob.out
[2025-11-29 02:32:00] -rw------- 1 boinc boinc    991834 Nov 29 02:27 agis_schedconf.cvmfs.json
[2025-11-29 02:32:00] -rw------- 1 boinc boinc   1516240 Nov 29 02:27 agis_ddmendpoints.agis.ALL.json
[2025-11-29 02:32:00] drwx------ 5 boinc boinc      4096 Nov 29 02:27 pilot3
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc       523 Nov 29 02:28 boinc_task_state.xml
[2025-11-29 02:32:00] -rw------- 1 boinc boinc       965 Nov 29 02:29 memory_monitor_summary.json
[2025-11-29 02:32:00] -rw------- 1 boinc boinc     55763 Nov 29 02:29 log.47556161._007840.job.log.tgz.1
[2025-11-29 02:32:00] -rw------- 1 boinc boinc        95 Nov 29 02:30 pilot_heartbeat.json
[2025-11-29 02:32:00] -rw------- 1 boinc boinc      8401 Nov 29 02:31 heartbeat.json
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc      8192 Nov 29 02:31 boinc_mmap_file
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc        23 Nov 29 02:31 wrapper_checkpoint.txt
[2025-11-29 02:32:00] -rw------- 1 boinc boinc      4752 Nov 29 02:32 pilotlog.txt
[2025-11-29 02:32:00] -rw------- 1 boinc boinc     93765 Nov 29 02:32 log.47556161._007840.job.log.1
[2025-11-29 02:32:00] -rw------- 1 boinc boinc       186 Nov 29 02:32 output.list
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc       620 Nov 29 02:32 runtime_log
[2025-11-29 02:32:00] -rw------- 1 boinc boinc    174080 Nov 29 02:32 result.tar.gz
[2025-11-29 02:32:00] -rw------- 1 boinc boinc       649 Nov 29 02:32 y0WMDmzrmi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNqNKDmai9T1n.diag
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc      8744 Nov 29 02:32 runtime_log.err
[2025-11-29 02:32:00] -rw-r--r-- 1 boinc boinc      7890 Nov 29 02:32 stderr.txt
[2025-11-29 02:32:00] No HITS result produced
[2025-11-29 02:32:00]  *** Contents of shared directory: ***
[2025-11-29 02:32:00] total 401940
[2025-11-29 02:32:00] -rw-r--r-- 2 boinc boinc 410795266 Nov 29 02:27 ATLAS.root_0
[2025-11-29 02:32:00] -rw-r--r-- 2 boinc boinc    590110 Nov 29 02:27 input.tar.gz
[2025-11-29 02:32:00] -rw-r--r-- 2 boinc boinc     15847 Nov 29 02:27 start_atlas.sh
[2025-11-29 02:32:00] -rw------- 1 boinc boinc    174080 Nov 29 02:32 result.tar.gz
02:32:01 (2836499): run_atlas exited; CPU time 32.087162
02:32:01 (2836499): called boinc_finish(0)

</stderr_txt>
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