Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:13:07 (22347): wrapper (7.7.26015): starting
00:13:07 (22347): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 00:13:07] Arguments: --nthreads 8
[2025-12-01 00:13:07] Threads: 8
[2025-12-01 00:13:07] Checking for CVMFS
[2025-12-01 00:13:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 00:13:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 00:13:09] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 00:13:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 00:13:10] 2.11.2.0 20077 291779 140520 153497 1 84 24990987 25165825 2504 130560 10 139266528 99.874 78711722 2601 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-01 00:13:10] CVMFS is ok
[2025-12-01 00:13:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 00:13:10] Checking for apptainer binary...
[2025-12-01 00:13:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 00:13:10] Running /usr/bin/apptainer --version
[2025-12-01 00:13:10] apptainer version 1.3.2-1.el7
[2025-12-01 00:13:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 00:13:16] cg-vwn315.simple-grid.lan
[2025-12-01 00:13:16] apptainer works
[2025-12-01 00:13:16] Set ATHENA_PROC_NUMBER=8
[2025-12-01 00:13:16] Set ATHENA_CORE_NUMBER=8
[2025-12-01 00:13:16] Starting ATLAS job with PandaID=6899792064
[2025-12-01 00:13:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 00:05:11]  *** The last 200 lines of the pilot log: ***
[2025-12-02 00:05:11] 2025-12-01 23:04:14,303 | INFO     | time since job start (85662s) is within the limit (172800.0s)
[2025-12-02 00:05:11] 2025-12-01 23:04:15,454 | INFO     | monitor loop #5739: job 0:6899792064 is in state 'finished'
[2025-12-02 00:05:11] 2025-12-01 23:04:15,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 00:05:11] 2025-12-01 23:04:16,314 | INFO     | time since job start (85664s) is within the limit (172800.0s)
[2025-12-02 00:05:11] 2025-12-01 23:04:17,964 | INFO     | monitor loop #5740: job 0:6899792064 is in state 'finished'
[2025-12-02 00:05:11] 2025-12-01 23:04:17,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 00:05:11] 2025-12-01 23:04:18,323 | INFO     | time since job start (85666s) is within the limit (172800.0s)
[2025-12-02 00:05:11] 2025-12-01 23:04:20,334 | INFO     | time since job start (85668s) is within the limit (172800.0s)
[2025-12-02 00:05:11] 2025-12-01 23:04:20,469 | INFO     | monitor loop #5741: job 0:6899792064 is in state 'finished'
[2025-12-02 00:05:11] 2025-12-01 23:04:20,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 00:05:11] 2025-12-01 23:04:22,341 | INFO     | time since job start (85670s) is within the limit (172800.0s)
[2025-12-02 00:05:11] 2025-12-01 23:04:22,973 | INFO     | monitor loop #5742: job 0:6899792064 is in state 'finished'
[2025-12-02 00:05:11] 2025-12-01 23:04:22,973 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 00:05:11] 2025-12-01 23:04:24,348 | INFO     | time since job start (85672s) is within the limit (172800.0s)
[2025-12-02 00:05:11] 2025-12-01 23:04:25,273 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 00:05:11] 2025-12-01 23:04:25,274 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-02 00:05:11] 2025-12-01 23:04:25,275 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-6899792064/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 00:05:11] 2025-12-01 23:04:25,276 | INFO     | extracted standard info from prmon json
[2025-12-02 00:05:11] 2025-12-01 23:04:25,276 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 00:05:11] 2025-12-01 23:04:25,276 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 00:05:11] 2025-12-01 23:04:25,303 | INFO     | fitting pss+swap vs Time
[2025-12-02 00:05:11] 2025-12-01 23:04:25,306 | INFO     | sum of square deviations: 841783909117.7784
[2025-12-02 00:05:11] 2025-12-01 23:04:25,478 | INFO     | monitor loop #5743: job 0:6899792064 is in state 'finished'
[2025-12-02 00:05:11] 2025-12-01 23:04:25,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 00:05:11] 2025-12-01 23:04:25,546 | INFO     | sum of deviations: 3383570696486.3306
[2025-12-02 00:05:11] 2025-12-01 23:04:25,546 | INFO     | mean x: 1764587634.1111112
[2025-12-02 00:05:11] 2025-12-01 23:04:25,546 | INFO     | mean y: 2837289.494623656
[2025-12-02 00:05:11] 2025-12-01 23:04:25,546 | INFO     | intersect: -7089965204.696459
[2025-12-02 00:05:11] 2025-12-01 23:04:25,548 | INFO     | chi2: 22.617395246905392
[2025-12-02 00:05:11] 2025-12-01 23:04:25,550 | INFO     | sum of square deviations: 832765338339.0823
[2025-12-02 00:05:11] 2025-12-01 23:04:25,616 | INFO     | sum of deviations: 3844290745197.689
[2025-12-02 00:05:11] 2025-12-01 23:04:25,616 | INFO     | mean x: 1764587481.615108
[2025-12-02 00:05:11] 2025-12-01 23:04:25,616 | INFO     | mean y: 2845078.9863309353
[2025-12-02 00:05:11] 2025-12-01 23:04:25,616 | INFO     | intersect: -8143011877.781653
[2025-12-02 00:05:11] 2025-12-01 23:04:25,618 | INFO     | chi2: 19.416167656879157
[2025-12-02 00:05:11] 2025-12-01 23:04:25,618 | INFO     | current chi2=19.416167656879157 (change=14.153829630157084 %)
[2025-12-02 00:05:11] 2025-12-01 23:04:25,618 | INFO     | right removable region: 1389
[2025-12-02 00:05:11] 2025-12-01 23:04:25,620 | INFO     | sum of square deviations: 832764392839.0831
[2025-12-02 00:05:11] 2025-12-01 23:04:25,690 | INFO     | sum of deviations: 2813677258151.499
[2025-12-02 00:05:11] 2025-12-01 23:04:25,691 | INFO     | mean x: 1764587786.615108
[2025-12-02 00:05:11] 2025-12-01 23:04:25,691 | INFO     | mean y: 2846924.328057554
[2025-12-02 00:05:11] 2025-12-01 23:04:25,691 | INFO     | intersect: -5959200165.946867
[2025-12-02 00:05:11] 2025-12-01 23:04:25,693 | INFO     | chi2: 18.12460211896295
[2025-12-02 00:05:11] 2025-12-01 23:04:25,693 | INFO     | current chi2=18.12460211896295 (change=19.864326014982492 %)
[2025-12-02 00:05:11] 2025-12-01 23:04:25,693 | INFO     | left removable region: 10
[2025-12-02 00:05:11] 2025-12-01 23:04:25,695 | INFO     | sum of square deviations: 813149840537.7948
[2025-12-02 00:05:11] 2025-12-01 23:04:25,752 | INFO     | sum of deviations: 2881049202000.603
[2025-12-02 00:05:11] 2025-12-01 23:04:25,753 | INFO     | mean x: 1764587756.124003
[2025-12-02 00:05:11] 2025-12-01 23:04:25,753 | INFO     | mean y: 2865161.797679478
[2025-12-02 00:05:11] 2025-12-01 23:04:25,753 | INFO     | intersect: -6249197979.823016
[2025-12-02 00:05:11] 2025-12-01 23:04:25,755 | INFO     | chi2: 10.708317698275657
[2025-12-02 00:05:11] 2025-12-01 23:04:25,755 | INFO     | current memory leak: 3.54 B/s (using 1379 data points, chi2=10.71)
[2025-12-02 00:05:11] 2025-12-01 23:04:25,757 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-12-02 00:05:11] 2025-12-01 23:04:25,757 | INFO     | ..............................
[2025-12-02 00:05:11] 2025-12-01 23:04:25,757 | INFO     | . Timing measurements:
[2025-12-02 00:05:11] 2025-12-01 23:04:25,757 | INFO     | . get job = 0 s
[2025-12-02 00:05:11] 2025-12-01 23:04:25,757 | INFO     | . initial setup = 8 s
[2025-12-02 00:05:11] 2025-12-01 23:04:25,758 | INFO     | . payload setup = 175 s
[2025-12-02 00:05:11] 2025-12-01 23:04:25,758 | INFO     | . stage-in = 0 s
[2025-12-02 00:05:11] 2025-12-01 23:04:25,758 | INFO     | . payload execution = 85188 s
[2025-12-02 00:05:11] 2025-12-01 23:04:25,758 | INFO     | . stage-out = 5 s
[2025-12-02 00:05:11] 2025-12-01 23:04:25,758 | INFO     | . log creation = 2 s
[2025-12-02 00:05:11] 2025-12-01 23:04:25,758 | INFO     | ..............................
[2025-12-02 00:05:11] 2025-12-01 23:04:25,902 | INFO     | 
[2025-12-02 00:05:11] 2025-12-01 23:04:25,903 | INFO     | job summary report
[2025-12-02 00:05:11] 2025-12-01 23:04:25,903 | INFO     | --------------------------------------------------
[2025-12-02 00:05:11] 2025-12-01 23:04:25,903 | INFO     | PanDA job id: 6899792064
[2025-12-02 00:05:11] 2025-12-01 23:04:25,903 | INFO     | task id: 47556161
[2025-12-02 00:05:11] 2025-12-01 23:04:25,903 | INFO     | errors: (none)
[2025-12-02 00:05:11] 2025-12-01 23:04:25,903 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 00:05:11] 2025-12-01 23:04:25,903 | INFO     | pilot state: finished 
[2025-12-02 00:05:11] 2025-12-01 23:04:25,903 | INFO     | transexitcode: 0
[2025-12-02 00:05:11] 2025-12-01 23:04:25,903 | INFO     | exeerrorcode: 0
[2025-12-02 00:05:11] 2025-12-01 23:04:25,904 | INFO     | exeerrordiag: 
[2025-12-02 00:05:11] 2025-12-01 23:04:25,904 | INFO     | exitcode: 0
[2025-12-02 00:05:11] 2025-12-01 23:04:25,904 | INFO     | exitmsg: OK
[2025-12-02 00:05:11] 2025-12-01 23:04:25,904 | INFO     | cpuconsumptiontime: 321823 s
[2025-12-02 00:05:11] 2025-12-01 23:04:25,904 | INFO     | nevents: 1000
[2025-12-02 00:05:11] 2025-12-01 23:04:25,904 | INFO     | neventsw: 0
[2025-12-02 00:05:11] 2025-12-01 23:04:25,904 | INFO     | pid: 32723
[2025-12-02 00:05:11] 2025-12-01 23:04:25,904 | INFO     | pgrp: 32723
[2025-12-02 00:05:11] 2025-12-01 23:04:25,904 | INFO     | corecount: 8
[2025-12-02 00:05:11] 2025-12-01 23:04:25,904 | INFO     | event service: False
[2025-12-02 00:05:11] 2025-12-01 23:04:25,905 | INFO     | sizes: {0: 2284146, 1: 2284345, 12: 2284345, 23: 2284373, 33: 2284401, 44: 2284457, 55: 2284613, 66: 2284641, 76: 2284669, 87: 2284725, 98: 2284753, 99: 2285323, 1
[2025-12-02 00:05:11] 2025-12-01 23:04:25,905 | INFO     | --------------------------------------------------
[2025-12-02 00:05:11] 2025-12-01 23:04:25,905 | INFO     | 
[2025-12-02 00:05:11] 2025-12-01 23:04:25,905 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2025-12-02 00:05:11] 2025-12-01 23:04:26,286 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,287 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,287 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,287 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,287 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,287 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,287 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,287 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,288 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,288 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,288 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,288 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,288 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,288 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,288 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,288 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,288 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,289 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 00:05:11] 2025-12-01 23:04:26,289 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,289 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 00:05:11] 2025-12-01 23:04:26,289 | INFO     | job 6899792064 has completed (purged errors)
[2025-12-02 00:05:11] 2025-12-01 23:04:26,289 | INFO     | overall cleanup function is called
[2025-12-02 00:05:11] 2025-12-01 23:04:27,309 | INFO     | --- collectZombieJob: --- 10, [32723]
[2025-12-02 00:05:11] 2025-12-01 23:04:27,309 | INFO     | zombie collector waiting for pid 32723
[2025-12-02 00:05:11] 2025-12-01 23:04:27,309 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 00:05:11] 2025-12-01 23:04:27,310 | INFO     | collected zombie processes
[2025-12-02 00:05:11] 2025-12-01 23:04:27,310 | INFO     | will attempt to kill all subprocesses of pid=32723
[2025-12-02 00:05:11] 2025-12-01 23:04:27,454 | INFO     | process IDs to be killed: [32723] (in reverse order)
[2025-12-02 00:05:11] 2025-12-01 23:04:28,372 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 00:05:11] 2025-12-01 23:04:28,373 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 00:05:11] 2025-12-01 23:04:28,376 | INFO     | did not find any defunct processes belonging to 32723
[2025-12-02 00:05:11] 2025-12-01 23:04:28,378 | INFO     | did not find any defunct processes belonging to 32723
[2025-12-02 00:05:11] 2025-12-01 23:04:28,421 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 00:05:11] 2025-12-01 23:04:28,421 | INFO     | ready for new job
[2025-12-02 00:05:11] 2025-12-01 23:04:28,422 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 00:05:11] 2025-12-01 23:04:28,427 | INFO     | ***************************************
[2025-12-02 00:05:11] 2025-12-01 23:04:28,427 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 00:05:11] 2025-12-01 23:04:28,427 | INFO     | ***************************************
[2025-12-02 00:05:11] 2025-12-01 23:04:28,427 | INFO     | 
[2025-12-02 00:05:11] 2025-12-01 23:04:28,428 | INFO     | pilot is running in a VM
[2025-12-02 00:05:11] 2025-12-01 23:04:28,428 | INFO     | architecture information:
[2025-12-02 00:05:11] 2025-12-01 23:04:28,437 | INFO     | executing command: cat /etc/os-release
[2025-12-02 00:05:11] 2025-12-01 23:04:28,704 | INFO     | cat /etc/os-release:
[2025-12-02 00:05:11] NAME="CentOS Linux"
[2025-12-02 00:05:11] VERSION="7 (Core)"
[2025-12-02 00:05:11] ID="centos"
[2025-12-02 00:05:11] ID_LIKE="rhel fedora"
[2025-12-02 00:05:11] VERSION_ID="7"
[2025-12-02 00:05:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 00:05:11] ANSI_COLOR="0;31"
[2025-12-02 00:05:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 00:05:11] HOME_URL="https://www.centos.org/"
[2025-12-02 00:05:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 00:05:11] 
[2025-12-02 00:05:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 00:05:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 00:05:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 00:05:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 00:05:11] 
[2025-12-02 00:05:11] 2025-12-01 23:04:28,705 | INFO     | ***************************************
[2025-12-02 00:05:11] 2025-12-01 23:04:29,208 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2025-12-02 00:05:11] 2025-12-01 23:04:29,700 | INFO     | sufficient remaining disk space (488372174848 B)
[2025-12-02 00:05:11] 2025-12-01 23:04:29,701 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 00:05:11] 2025-12-01 23:04:29,701 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 00:05:11] 2025-12-01 23:04:29,701 | INFO     | update_server=False
[2025-12-02 00:05:11] 2025-12-01 23:04:29,701 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 00:05:11] 2025-12-01 23:04:29,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 00:05:11] 2025-12-01 23:04:29,706 | INFO     | aborting loop
[2025-12-02 00:05:11] 2025-12-01 23:04:29,823 | INFO     | all data control threads have been joined
[2025-12-02 00:05:11] 2025-12-01 23:04:30,096 | INFO     | all payload control threads have been joined
[2025-12-02 00:05:11] 2025-12-01 23:04:30,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 00:05:11] 2025-12-01 23:04:30,520 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 00:05:11] 2025-12-01 23:04:30,707 | INFO     | [job] retrieve thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:30,715 | INFO     | [job] job monitor thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:30,766 | INFO     | [payload] failed_post thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:30,829 | INFO     | [data] control thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:30,873 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:30,901 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:30,921 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 00:05:11] 2025-12-01 23:04:30,922 | INFO     | [job] validate thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:31,102 | INFO     | [payload] control thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:31,154 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:31,187 | INFO     | all job control threads have been joined
[2025-12-02 00:05:11] 2025-12-01 23:04:31,206 | INFO     | [data] copytool_in thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:31,282 | INFO     | [payload] validate_post thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:31,434 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:31,927 | INFO     | [job] queue monitor thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:32,188 | INFO     | [data] copytool_out thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:32,193 | INFO     | [job] control thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:34,529 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 00:05:11] 2025-12-01 23:04:57,530 | INFO     | PID=26134 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 00:05:11] 2025-12-01 23:04:57,530 | INFO     | .. there are 9 such processes running
[2025-12-02 00:05:11] 2025-12-01 23:04:57,531 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 00:05:11] 2025-12-01 23:04:57,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 00:05:11] 2025-12-01 23:04:57,532 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 00:05:11] 2025-12-01 23:05:01,081 | INFO     | [monitor] cgroup control has ended
[2025-12-02 00:05:11] 2025-12-01 23:05:02,088 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140591758616384)>', '<ExcThread(monitor, started 140591191029504)>']
[2025-12-02 00:05:11] 2025-12-01 23:05:02,561 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 00:05:11] 2025-12-01 23:05:02,561 | INFO     | [monitor] control thread has ended
[2025-12-02 00:05:11] 2025-12-01 23:05:07,114 | INFO     | all workflow threads have been joined
[2025-12-02 00:05:11] 2025-12-01 23:05:07,114 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 00:05:11] 2025-12-01 23:05:07,114 | INFO     | traces error code: 0
[2025-12-02 00:05:11] 2025-12-01 23:05:07,115 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 00:05:11] 2025-12-01 23:05:07,386 [wrapper] ==== pilot stdout END ====
[2025-12-02 00:05:11] 2025-12-01 23:05:07,501 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 00:05:11] 2025-12-01 23:05:07,575 [wrapper] pilotpid: 26134
[2025-12-02 00:05:11] 2025-12-01 23:05:07,652 [wrapper] Pilot exit status: 0
[2025-12-02 00:05:11] 2025-12-01 23:05:07,966 [wrapper] pandaids: 6899792064
[2025-12-02 00:05:11] 2025-12-01 23:05:08,866 [wrapper] cleanup supervisor_pilot  9742 26135
[2025-12-02 00:05:11] 2025-12-01 23:05:08,975 [wrapper] Test setup, not cleaning
[2025-12-02 00:05:11] 2025-12-01 23:05:09,056 [wrapper] apfmon messages muted
[2025-12-02 00:05:11] 2025-12-01 23:05:09,153 [wrapper] ==== wrapper stdout END ====
[2025-12-02 00:05:11] 2025-12-01 23:05:09,244 [wrapper] ==== wrapper stderr END ====
[2025-12-02 00:05:11]  *** Error codes and diagnostics ***
[2025-12-02 00:05:11]     "exeErrorCode": 0,
[2025-12-02 00:05:11]     "exeErrorDiag": "",
[2025-12-02 00:05:11]     "pilotErrorCode": 0,
[2025-12-02 00:05:11]     "pilotErrorDiag": "",
[2025-12-02 00:05:11]  *** Listing of results directory ***
[2025-12-02 00:05:11] total 1333920
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-02 00:05:11] -rwx------. 1 boinc boinc     36292 Nov 27 09:47 runpilot2-wrapper.sh
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc      5112 Nov 27 09:48 queuedata.json
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc       100 Dec  1 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 00:05:11] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 00:13 run_atlas
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc       105 Dec  1 00:13 job.xml
[2025-12-02 00:05:11] -rw-r--r--. 2 boinc boinc 408788581 Dec  1 00:13 EVNT.47483658._002800.pool.root.1
[2025-12-02 00:05:11] -rw-r--r--. 2 boinc boinc     15847 Dec  1 00:13 start_atlas.sh
[2025-12-02 00:05:11] drwxrwx--x. 2 boinc boinc        68 Dec  1 00:13 shared
[2025-12-02 00:05:11] -rw-r--r--. 2 boinc boinc    590112 Dec  1 00:13 input.tar.gz
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc      6391 Dec  1 00:13 init_data.xml
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc         0 Dec  1 00:13 boinc_lockfile
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc      2787 Dec  1 00:13 pandaJob.out
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc    993245 Dec  1 00:16 agis_schedconf.cvmfs.json
[2025-12-02 00:05:11] drwx------. 5 boinc boinc      4096 Dec  1 00:16 pilot3
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc       533 Dec  1 23:41 boinc_task_state.xml
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc 925494574 Dec  2 00:01 HITS.47556161._007829.pool.root.1
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc      1034 Dec  2 00:02 memory_monitor_summary.json
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc   1516240 Dec  2 00:02 agis_ddmendpoints.agis.ALL.json
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc   2481511 Dec  2 00:02 log.47556161._007829.job.log.tgz.1
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc      7262 Dec  2 00:04 heartbeat.json
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc        95 Dec  2 00:04 pilot_heartbeat.json
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc      4885 Dec  2 00:05 pilotlog.txt
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc      8192 Dec  2 00:05 boinc_mmap_file
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc        29 Dec  2 00:05 wrapper_checkpoint.txt
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc  11393979 Dec  2 00:05 log.47556161._007829.job.log.1
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc       353 Dec  2 00:05 output.list
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc       620 Dec  2 00:05 runtime_log
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc  13895680 Dec  2 00:05 result.tar.gz
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc      8833 Dec  2 00:05 runtime_log.err
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc       662 Dec  2 00:05 3OKODmspmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhbKKDmu4OLWo.diag
[2025-12-02 00:05:11] -rw-r--r--. 1 boinc boinc     21383 Dec  2 00:05 stderr.txt
[2025-12-02 00:05:11] HITS file was successfully produced:
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc 925494574 Dec  2 00:01 shared/HITS.pool.root.1
[2025-12-02 00:05:11]  *** Contents of shared directory: ***
[2025-12-02 00:05:11] total 1317180
[2025-12-02 00:05:11] -rw-r--r--. 2 boinc boinc 408788581 Dec  1 00:13 ATLAS.root_0
[2025-12-02 00:05:11] -rw-r--r--. 2 boinc boinc     15847 Dec  1 00:13 start_atlas.sh
[2025-12-02 00:05:11] -rw-r--r--. 2 boinc boinc    590112 Dec  1 00:13 input.tar.gz
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc 925494574 Dec  2 00:01 HITS.pool.root.1
[2025-12-02 00:05:11] -rw-------. 1 boinc boinc  13895680 Dec  2 00:05 result.tar.gz
00:05:12 (22347): run_atlas exited; CPU time 322440.530206
00:05:12 (22347): called boinc_finish(0)

</stderr_txt>
]]>

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