Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
10:11:08 (2481024): wrapper (7.7.26015): starting
10:11:08 (2481024): wrapper: running run_atlas (--nthreads 12)
[2025-11-29 10:11:08] Arguments: --nthreads 12
[2025-11-29 10:11:08] Threads: 12
[2025-11-29 10:11:08] Checking for CVMFS
[2025-11-29 10:11:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 10:11:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 10:11:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 10:11:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 10:11:08] 2.13.0.0 498242 14880 44916 153437 2 81 73322362 82903041 1302 130560 29 6390432 99.984 460211 211 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-29 10:11:08] CVMFS is ok
[2025-11-29 10:11:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-29 10:11:08] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-29 10:11:08] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-29 10:11:08] Further information can be found at the LHC@home message board.
[2025-11-29 10:11:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 10:11:08] Checking for apptainer binary...
[2025-11-29 10:11:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 10:11:08] Running /usr/bin/apptainer --version
[2025-11-29 10:11:08] apptainer version 1.4.4
[2025-11-29 10:11:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 10:11:08] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) torr
[2025-11-29 10:11:08] apptainer works
[2025-11-29 10:11:08] Set ATHENA_PROC_NUMBER=12
[2025-11-29 10:11:08] Set ATHENA_CORE_NUMBER=12
[2025-11-29 10:11:08] Starting ATLAS job with PandaID=6899576213
[2025-11-29 10:11:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 13:41:39]  *** The last 200 lines of the pilot log: ***
[2025-11-29 13:41:39] 2025-11-29 13:40:54,974 | INFO     | time since job start (12582s) is within the limit (172800.0s)
[2025-11-29 13:41:39] 2025-11-29 13:40:55,436 | INFO     | monitor loop #947: job 0:6899576213 is in state 'finished'
[2025-11-29 13:41:39] 2025-11-29 13:40:55,436 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 13:41:39] 2025-11-29 13:40:55,909 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-29 13:41:39] 2025-11-29 13:40:56,018 | INFO     | PID=2484761 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-29 13:41:39] 2025-11-29 13:40:56,150 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 13:41:39] 2025-11-29 13:40:56,150 | INFO     | job 6899576213 has state=finished
[2025-11-29 13:41:39] 2025-11-29 13:40:56,150 | INFO     | preparing for final server update for job 6899576213 in state='finished'
[2025-11-29 13:41:39] 2025-11-29 13:40:56,150 | INFO     | this job has now completed (state=finished)
[2025-11-29 13:41:39] 2025-11-29 13:40:56,150 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-29 13:41:39] 2025-11-29 13:40:56,150 | INFO     | log transfer has been attempted: DONE
[2025-11-29 13:41:39] 2025-11-29 13:40:56,150 | INFO     | job 6899576213 has finished - writing final server update
[2025-11-29 13:41:39] 2025-11-29 13:40:56,150 | INFO     | total number of processed events: 1000 (read)
[2025-11-29 13:41:39] 2025-11-29 13:40:56,151 | INFO     | executing command: lscpu
[2025-11-29 13:41:39] 2025-11-29 13:40:56,159 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-29 13:41:39] 2025-11-29 13:40:57,019 | INFO     | time since job start (12585s) is within the limit (172800.0s)
[2025-11-29 13:41:39] 2025-11-29 13:40:57,270 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 13:41:39] 2025-11-29 13:40:57,271 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3698.8915
[2025-11-29 13:41:39] 2025-11-29 13:40:57,271 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6899576213/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 13:41:39] 2025-11-29 13:40:57,272 | INFO     | extracted standard info from prmon json
[2025-11-29 13:41:39] 2025-11-29 13:40:57,272 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 13:41:39] 2025-11-29 13:40:57,272 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 13:41:39] 2025-11-29 13:40:57,273 | INFO     | fitting pss+swap vs Time
[2025-11-29 13:41:39] 2025-11-29 13:40:57,273 | INFO     | sum of square deviations: 2710489932.6019397
[2025-11-29 13:41:39] 2025-11-29 13:40:57,273 | INFO     | sum of deviations: 1296864956212.388
[2025-11-29 13:41:39] 2025-11-29 13:40:57,273 | INFO     | mean x: 1764417339.7864077
[2025-11-29 13:41:39] 2025-11-29 13:40:57,273 | INFO     | mean y: 4668948.781553398
[2025-11-29 13:41:39] 2025-11-29 13:40:57,273 | INFO     | intersect: -844201018214.906
[2025-11-29 13:41:39] 2025-11-29 13:40:57,273 | INFO     | chi2: 23.643730471833305
[2025-11-29 13:41:39] 2025-11-29 13:40:57,274 | INFO     | sum of square deviations: 2517881059.6815743
[2025-11-29 13:41:39] 2025-11-29 13:40:57,274 | INFO     | sum of deviations: 1265315559314.7168
[2025-11-29 13:41:39] 2025-11-29 13:40:57,274 | INFO     | mean x: 1764417187.2935324
[2025-11-29 13:41:39] 2025-11-29 13:40:57,274 | INFO     | mean y: 4642779.089552239
[2025-11-29 13:41:39] 2025-11-29 13:40:57,274 | INFO     | intersect: -886671283242.2753
[2025-11-29 13:41:39] 2025-11-29 13:40:57,274 | INFO     | chi2: 24.005429030572184
[2025-11-29 13:41:39] 2025-11-29 13:40:57,274 | INFO     | current chi2=24.005429030572184 (change=-1.5297863387918837 %)
[2025-11-29 13:41:39] 2025-11-29 13:40:57,274 | INFO     | right removable region: 200
[2025-11-29 13:41:39] 2025-11-29 13:40:57,274 | INFO     | sum of square deviations: 2517882400.397998
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | sum of deviations: 1210950215900.463
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | mean x: 1764417492.278607
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | mean y: 4736620.223880597
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | intersect: -848574109983.4141
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | chi2: 21.7856380954911
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | current chi2=21.7856380954911 (change=7.858710699463191 %)
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | left removable region: 10
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | sum of square deviations: 2126699677.5789483
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | sum of deviations: 1106557771335.4211
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | mean x: 1764417461.7894738
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | mean y: 4727970.510526316
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | intersect: -918051485987.1284
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | chi2: 21.611238501379084
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | current memory leak: 520.32 B/s (using 190 data points, chi2=21.61)
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | could have reported an average CPU frequency of 3529 MHz (10 samples)
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | ..............................
[2025-11-29 13:41:39] 2025-11-29 13:40:57,275 | INFO     | . Timing measurements:
[2025-11-29 13:41:39] 2025-11-29 13:40:57,276 | INFO     | . get job = 0 s
[2025-11-29 13:41:39] 2025-11-29 13:40:57,276 | INFO     | . initial setup = 1 s
[2025-11-29 13:41:39] 2025-11-29 13:40:57,276 | INFO     | . payload setup = 1 s
[2025-11-29 13:41:39] 2025-11-29 13:40:57,276 | INFO     | . stage-in = 0 s
[2025-11-29 13:41:39] 2025-11-29 13:40:57,276 | INFO     | . payload execution = 12563 s
[2025-11-29 13:41:39] 2025-11-29 13:40:57,276 | INFO     | . stage-out = 1 s
[2025-11-29 13:41:39] 2025-11-29 13:40:57,276 | INFO     | . log creation = 0 s
[2025-11-29 13:41:39] 2025-11-29 13:40:57,276 | INFO     | ..............................
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | 
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | job summary report
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | --------------------------------------------------
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | PanDA job id: 6899576213
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | task id: 47556173
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | errors: (none)
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | pilot state: finished 
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | transexitcode: 0
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | exeerrorcode: 0
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | exeerrordiag: 
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | exitcode: 0
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | exitmsg: OK
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | cpuconsumptiontime: 124092 s
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | nevents: 1000
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | neventsw: 0
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | pid: 2491225
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | pgrp: 2491225
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | corecount: 12
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | event service: False
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | sizes: {0: 2284317, 1: 2284579, 10: 2284607, 12568: 2315756, 12570: 2324764, 12571: 2324820, 12573: 2325194}
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | --------------------------------------------------
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | 
[2025-11-29 13:41:39] 2025-11-29 13:40:57,301 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,308 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 13:41:39] 2025-11-29 13:40:57,309 | INFO     | job 6899576213 has completed (purged errors)
[2025-11-29 13:41:39] 2025-11-29 13:40:57,309 | INFO     | overall cleanup function is called
[2025-11-29 13:41:39] 2025-11-29 13:40:58,317 | INFO     | --- collectZombieJob: --- 10, [2491225]
[2025-11-29 13:41:39] 2025-11-29 13:40:58,317 | INFO     | zombie collector waiting for pid 2491225
[2025-11-29 13:41:39] 2025-11-29 13:40:58,317 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 13:41:39] 2025-11-29 13:40:58,317 | INFO     | collected zombie processes
[2025-11-29 13:41:39] 2025-11-29 13:40:58,317 | INFO     | will attempt to kill all subprocesses of pid=2491225
[2025-11-29 13:41:39] 2025-11-29 13:40:58,345 | INFO     | process IDs to be killed: [2491225] (in reverse order)
[2025-11-29 13:41:39] 2025-11-29 13:40:58,362 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 13:41:39] 2025-11-29 13:40:58,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 13:41:39] 2025-11-29 13:40:58,364 | INFO     | did not find any defunct processes belonging to 2491225
[2025-11-29 13:41:39] 2025-11-29 13:40:58,365 | INFO     | did not find any defunct processes belonging to 2491225
[2025-11-29 13:41:39] 2025-11-29 13:40:58,365 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 13:41:39] 2025-11-29 13:40:58,365 | INFO     | ready for new job
[2025-11-29 13:41:39] 2025-11-29 13:40:58,365 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 13:41:39] 2025-11-29 13:40:58,375 | INFO     | ***************************************
[2025-11-29 13:41:39] 2025-11-29 13:40:58,375 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 13:41:39] 2025-11-29 13:40:58,375 | INFO     | ***************************************
[2025-11-29 13:41:39] 2025-11-29 13:40:58,375 | INFO     | 
[2025-11-29 13:41:39] 2025-11-29 13:40:58,375 | INFO     | architecture information:
[2025-11-29 13:41:39] 2025-11-29 13:40:58,375 | INFO     | executing command: cat /etc/os-release
[2025-11-29 13:41:39] 2025-11-29 13:40:58,379 | INFO     | cat /etc/os-release:
[2025-11-29 13:41:39] NAME="CentOS Linux"
[2025-11-29 13:41:39] VERSION="7 (Core)"
[2025-11-29 13:41:39] ID="centos"
[2025-11-29 13:41:39] ID_LIKE="rhel fedora"
[2025-11-29 13:41:39] VERSION_ID="7"
[2025-11-29 13:41:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 13:41:39] ANSI_COLOR="0;31"
[2025-11-29 13:41:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 13:41:39] HOME_URL="https://www.centos.org/"
[2025-11-29 13:41:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 13:41:39] 
[2025-11-29 13:41:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 13:41:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 13:41:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 13:41:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 13:41:39] 
[2025-11-29 13:41:39] 2025-11-29 13:40:58,379 | INFO     | ***************************************
[2025-11-29 13:41:39] 2025-11-29 13:40:58,881 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-11-29 13:41:39] 2025-11-29 13:40:58,887 | INFO     | sufficient remaining disk space (419128410112 B)
[2025-11-29 13:41:39] 2025-11-29 13:40:58,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 13:41:39] 2025-11-29 13:40:58,887 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 13:41:39] 2025-11-29 13:40:58,887 | INFO     | update_server=False
[2025-11-29 13:41:39] 2025-11-29 13:40:58,887 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 13:41:39] 2025-11-29 13:40:58,887 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-29 13:41:39] 2025-11-29 13:40:58,887 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 13:41:39] 2025-11-29 13:40:58,887 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 13:41:39] 2025-11-29 13:40:58,887 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 13:41:39] 2025-11-29 13:40:58,887 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 13:41:39] 2025-11-29 13:40:58,944 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 13:41:39] 2025-11-29 13:40:58,944 | INFO     | aborting loop
[2025-11-29 13:41:39] 2025-11-29 13:40:58,951 | INFO     | job.realtimelogging is not enabled
[2025-11-29 13:41:39] 2025-11-29 13:40:59,216 | INFO     | all payload control threads have been joined
[2025-11-29 13:41:39] 2025-11-29 13:40:59,245 | INFO     | all data control threads have been joined
[2025-11-29 13:41:39] 2025-11-29 13:40:59,252 | INFO     | all job control threads have been joined
[2025-11-29 13:41:39] 2025-11-29 13:40:59,892 | INFO     | [job] retrieve thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:40:59,892 | INFO     | [job] queue monitor thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:40:59,949 | INFO     | [job] job monitor thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:40:59,956 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:40:59,973 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 13:41:39] 2025-11-29 13:41:00,013 | INFO     | [payload] validate_post thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:41:00,221 | INFO     | [payload] control thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:41:00,250 | INFO     | [data] control thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:41:00,258 | INFO     | [job] control thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:41:00,534 | INFO     | [payload] failed_post thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:41:00,701 | INFO     | [data] copytool_in thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:41:00,796 | INFO     | [job] validate thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:41:00,805 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:41:00,908 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:41:01,104 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:41:01,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 13:41:39] 2025-11-29 13:41:01,977 | INFO     | [data] copytool_out thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:41:05,944 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 13:41:39] 2025-11-29 13:41:10,894 [wrapper] supervise_pilot (15 min periods counter: 15)
[2025-11-29 13:41:39] 2025-11-29 13:41:32,673 | INFO     | [monitor] cgroup control has ended
[2025-11-29 13:41:39] 2025-11-29 13:41:34,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123277297395520)>', '<ExcThread(monitor, started 123276810503936)>']
[2025-11-29 13:41:39] 2025-11-29 13:41:35,025 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 13:41:39] 2025-11-29 13:41:35,025 | INFO     | [monitor] control thread has ended
[2025-11-29 13:41:39] 2025-11-29 13:41:39,549 | INFO     | all workflow threads have been joined
[2025-11-29 13:41:39] 2025-11-29 13:41:39,549 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 13:41:39] 2025-11-29 13:41:39,549 | INFO     | traces error code: 0
[2025-11-29 13:41:39] 2025-11-29 13:41:39,549 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 13:41:39] 2025-11-29 13:41:39,610 [wrapper] ==== pilot stdout END ====
[2025-11-29 13:41:39] 2025-11-29 13:41:39,612 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 13:41:39] 2025-11-29 13:41:39,613 [wrapper] pilotpid: 2484761
[2025-11-29 13:41:39] 2025-11-29 13:41:39,614 [wrapper] Pilot exit status: 0
[2025-11-29 13:41:39] 2025-11-29 13:41:39,618 [wrapper] pandaids: 6899576213
[2025-11-29 13:41:39] 2025-11-29 13:41:39,628 [wrapper] cleanup supervisor_pilot 2581895 2484762
[2025-11-29 13:41:39] 2025-11-29 13:41:39,629 [wrapper] Test setup, not cleaning
[2025-11-29 13:41:39] 2025-11-29 13:41:39,630 [wrapper] apfmon messages muted
[2025-11-29 13:41:39] 2025-11-29 13:41:39,630 [wrapper] ==== wrapper stdout END ====
[2025-11-29 13:41:39] 2025-11-29 13:41:39,631 [wrapper] ==== wrapper stderr END ====
[2025-11-29 13:41:39]  *** Error codes and diagnostics ***
[2025-11-29 13:41:39]     "exeErrorCode": 0,
[2025-11-29 13:41:39]     "exeErrorDiag": "",
[2025-11-29 13:41:39]     "pilotErrorCode": 0,
[2025-11-29 13:41:39]     "pilotErrorDiag": "",
[2025-11-29 13:41:39]  *** Listing of results directory ***
[2025-11-29 13:41:39] total 1310908
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc    576529 Nov 27 08:46 pilot3.tar.gz
[2025-11-29 13:41:39] -rwx------ 1 boinc boinc     36292 Nov 27 08:46 runpilot2-wrapper.sh
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc      5112 Nov 27 08:46 queuedata.json
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc       100 Nov 29 10:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 13:41:39] -rwxr-xr-x 1 boinc boinc      7986 Nov 29 10:11 run_atlas
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc       105 Nov 29 10:11 job.xml
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc      9907 Nov 29 10:11 init_data.xml
[2025-11-29 13:41:39] -rw-r--r-- 2 boinc boinc 409401879 Nov 29 10:11 EVNT.47483658._003384.pool.root.1
[2025-11-29 13:41:39] -rw-r--r-- 2 boinc boinc     15847 Nov 29 10:11 start_atlas.sh
[2025-11-29 13:41:39] drwxrwx--x 2 boinc boinc      4096 Nov 29 10:11 shared
[2025-11-29 13:41:39] -rw-r--r-- 2 boinc boinc    590099 Nov 29 10:11 input.tar.gz
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc         0 Nov 29 10:11 boinc_lockfile
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc      2784 Nov 29 10:11 pandaJob.out
[2025-11-29 13:41:39] -rw------- 1 boinc boinc    991834 Nov 29 10:11 agis_schedconf.cvmfs.json
[2025-11-29 13:41:39] drwx------ 5 boinc boinc      4096 Nov 29 10:11 pilot3
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc       532 Nov 29 13:37 boinc_task_state.xml
[2025-11-29 13:41:39] -rw------- 1 boinc boinc        95 Nov 29 13:40 pilot_heartbeat.json
[2025-11-29 13:41:39] -rw------- 1 boinc boinc 921529324 Nov 29 13:40 HITS.47556173._003401.pool.root.1
[2025-11-29 13:41:39] -rw------- 1 boinc boinc      1069 Nov 29 13:40 memory_monitor_summary.json
[2025-11-29 13:41:39] -rw------- 1 boinc boinc   1516240 Nov 29 13:40 agis_ddmendpoints.agis.ALL.json
[2025-11-29 13:41:39] -rw------- 1 boinc boinc   1947030 Nov 29 13:40 log.47556173._003401.job.log.tgz.1
[2025-11-29 13:41:39] -rw------- 1 boinc boinc      8626 Nov 29 13:40 heartbeat.json
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc      8192 Nov 29 13:41 boinc_mmap_file
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc        29 Nov 29 13:41 wrapper_checkpoint.txt
[2025-11-29 13:41:39] -rw------- 1 boinc boinc      4632 Nov 29 13:41 pilotlog.txt
[2025-11-29 13:41:39] -rw------- 1 boinc boinc   1808251 Nov 29 13:41 log.47556173._003401.job.log.1
[2025-11-29 13:41:39] -rw------- 1 boinc boinc       353 Nov 29 13:41 output.list
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc       620 Nov 29 13:41 runtime_log
[2025-11-29 13:41:39] -rw------- 1 boinc boinc   3778560 Nov 29 13:41 result.tar.gz
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc      9048 Nov 29 13:41 runtime_log.err
[2025-11-29 13:41:39] -rw------- 1 boinc boinc       661 Nov 29 13:41 ABVKDmEpmi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZlNKDmeAkKXo.diag
[2025-11-29 13:41:39] -rw-r--r-- 1 boinc boinc     22026 Nov 29 13:41 stderr.txt
[2025-11-29 13:41:39] HITS file was successfully produced:
[2025-11-29 13:41:39] -rw------- 1 boinc boinc 921529324 Nov 29 13:40 shared/HITS.pool.root.1
[2025-11-29 13:41:39]  *** Contents of shared directory: ***
[2025-11-29 13:41:39] total 1304036
[2025-11-29 13:41:39] -rw-r--r-- 2 boinc boinc 409401879 Nov 29 10:11 ATLAS.root_0
[2025-11-29 13:41:39] -rw-r--r-- 2 boinc boinc     15847 Nov 29 10:11 start_atlas.sh
[2025-11-29 13:41:39] -rw-r--r-- 2 boinc boinc    590099 Nov 29 10:11 input.tar.gz
[2025-11-29 13:41:39] -rw------- 1 boinc boinc 921529324 Nov 29 13:40 HITS.pool.root.1
[2025-11-29 13:41:39] -rw------- 1 boinc boinc   3778560 Nov 29 13:41 result.tar.gz
13:41:41 (2481024): run_atlas exited; CPU time 123617.193819
13:41:41 (2481024): called boinc_finish(0)

</stderr_txt>
]]>

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