Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:56:25 (2745618): wrapper (7.7.26015): starting
15:56:25 (2745618): wrapper: running run_atlas (--nthreads 12)
[2025-11-28 15:56:25] Arguments: --nthreads 12
[2025-11-28 15:56:25] Threads: 12
[2025-11-28 15:56:25] Checking for CVMFS
[2025-11-28 15:56:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 15:56:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 15:56:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 15:56:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 15:56:27] 2.11.3.0 1603625 31912 236032 153423 2 968 24547456 45568000 20230 130560 0 363016609 99.805 201896001 21238 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-28 15:56:27] CVMFS is ok
[2025-11-28 15:56:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 15:56:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 15:56:27] Further information can be found at the LHC@home message board.
[2025-11-28 15:56:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 15:56:27] Checking for apptainer binary...
[2025-11-28 15:56:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 15:56:27] Running /usr/bin/apptainer --version
[2025-11-28 15:56:27] apptainer version 1.4.1-1.el9
[2025-11-28 15:56:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 15:56:27] wns0171.triumf.lcg
[2025-11-28 15:56:27] apptainer works
[2025-11-28 15:56:27] Set ATHENA_PROC_NUMBER=12
[2025-11-28 15:56:27] Set ATHENA_CORE_NUMBER=12
[2025-11-28 15:56:27] Starting ATLAS job with PandaID=6900368796
[2025-11-28 15:56:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 16:03:00]  *** The last 200 lines of the pilot log: ***
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | ..............................
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . Timing measurements:
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . get job = 0 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . initial setup = 4 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . payload setup = 13 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . stage-in = 0 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . payload execution = 166 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . stage-out = 1 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . log creation = 0 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | ..............................
[2025-11-28 16:03:00] 2025-11-29 00:02:27,849 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-28 16:03:00] 2025-11-29 00:02:27,849 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6900368796/pilotlog.txt
[2025-11-28 16:03:00] 2025-11-29 00:02:27,900 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-28 16:03:00] - Log from pilotlog.txt -
[2025-11-28 16:03:00] 2025-11-29 00:02:27,846 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6900368796/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 16:03:00] 2025-11-29 00:02:27,847 | INFO     | extracted standard info from prmon json
[2025-11-28 16:03:00] 2025-11-29 00:02:27,847 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 16:03:00] 2025-11-29 00:02:27,847 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 16:03:00] 2025-11-29 00:02:27,847 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-28 16:03:00] 2025-11-29 00:02:27,847 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | WARNING  | wrong length of table data, x=[1764374257.0, 1764374318.0, 1764374379.0], y=[1663.0, 661377.0, 524670.0] (must be same and length>=4)
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | could have reported an average CPU frequency of 2959 MHz (4 samples)
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | ..............................
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . Timing measurements:
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . get job = 0 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . initial setup = 4 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . payload setup = 13 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . stage-in = 0 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . payload execution = 166 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . stage-out = 1 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . log creation = 0 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | ..............................
[2025-11-28 16:03:00] 2025-11-29 00:02:27,849 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-28 16:03:00] 2025-11-29 00:02:27,849 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6900368796/pilotlog.txt
[2025-11-28 16:03:00] 2025-11-29 00:02:27,900 | WARNING  | 
[2025-11-28 16:03:00] [begin log extracts]
[2025-11-28 16:03:00] - Log from pilotlog.txt -
[2025-11-28 16:03:00] 2025-11-29 00:02:27,846 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6900368796/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 16:03:00] 2025-11-29 00:02:27,847 | INFO     | extracted standard info from prmon json
[2025-11-28 16:03:00] 2025-11-29 00:02:27,847 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 16:03:00] 2025-11-29 00:02:27,847 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 16:03:00] 2025-11-29 00:02:27,847 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-28 16:03:00] 2025-11-29 00:02:27,847 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | WARNING  | wrong length of table data, x=[1764374257.0, 1764374318.0, 1764374379.0], y=[1663.0, 661377.0, 524670.0] (must be same and length>=4)
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | could have reported an average CPU frequency of 2959 MHz (4 samples)
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | ..............................
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . Timing measurements:
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . get job = 0 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . initial setup = 4 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . payload setup = 13 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . stage-in = 0 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . payload execution = 166 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . stage-out = 1 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | . log creation = 0 s
[2025-11-28 16:03:00] 2025-11-29 00:02:27,848 | INFO     | ..............................
[2025-11-28 16:03:00] 2025-11-29 00:02:27,849 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-28 16:03:00] 2025-11-29 00:02:27,849 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6900368796/pilotlog.txt
[2025-11-28 16:03:00] [end log extracts]
[2025-11-28 16:03:00] 2025-11-29 00:02:27,900 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-28 16:03:00] 2025-11-29 00:02:27,901 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-28 16:03:00] 2025-11-29 00:02:28,005 | INFO     | 
[2025-11-28 16:03:00] 2025-11-29 00:02:28,005 | INFO     | job summary report
[2025-11-28 16:03:00] 2025-11-29 00:02:28,005 | INFO     | --------------------------------------------------
[2025-11-28 16:03:00] 2025-11-29 00:02:28,005 | INFO     | PanDA job id: 6900368796
[2025-11-28 16:03:00] 2025-11-29 00:02:28,005 | INFO     | task id: 47556173
[2025-11-28 16:03:00] 2025-11-29 00:02:28,005 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-28 16:00:07,413 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-28 16:03:00] 2025-11-29 00:02:28,005 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-28 16:03:00] 2025-11-29 00:02:28,005 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 16:03:00] 2025-11-29 00:02:28,005 | INFO     | pilot state: failed 
[2025-11-28 16:03:00] 2025-11-29 00:02:28,005 | INFO     | transexitcode: 65
[2025-11-28 16:03:00] 2025-11-29 00:02:28,005 | INFO     | exeerrorcode: 65
[2025-11-28 16:03:00] 2025-11-29 00:02:28,005 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | exitcode: 65
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | cpuconsumptiontime: 37 s
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | nevents: 0
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | neventsw: 0
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | pid: 2756015
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | pgrp: 2756015
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | corecount: 12
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | event service: False
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | sizes: {0: 2284314, 8: 2284576, 11: 2284604, 183: 2310029, 185: 2314319, 186: 2314375, 315: 2314697}
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | --------------------------------------------------
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | 
[2025-11-28 16:03:00] 2025-11-29 00:02:28,006 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,034 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,035 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,035 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 16:03:00] 2025-11-29 00:02:28,035 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,035 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 16:03:00] 2025-11-29 00:02:28,035 | INFO     | job 6900368796 has completed (purged errors)
[2025-11-28 16:03:00] 2025-11-29 00:02:28,035 | INFO     | overall cleanup function is called
[2025-11-28 16:03:00] 2025-11-29 00:02:29,039 | INFO     | --- collectZombieJob: --- 10, [2756015]
[2025-11-28 16:03:00] 2025-11-29 00:02:29,039 | INFO     | zombie collector waiting for pid 2756015
[2025-11-28 16:03:00] 2025-11-29 00:02:29,039 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 16:03:00] 2025-11-29 00:02:29,039 | INFO     | collected zombie processes
[2025-11-28 16:03:00] 2025-11-29 00:02:29,039 | INFO     | will attempt to kill all subprocesses of pid=2756015
[2025-11-28 16:03:00] 2025-11-29 00:02:29,217 | INFO     | process IDs to be killed: [2756015] (in reverse order)
[2025-11-28 16:03:00] 2025-11-29 00:02:29,273 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 16:03:00] 2025-11-29 00:02:29,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 16:03:00] 2025-11-29 00:02:29,281 | INFO     | did not find any defunct processes belonging to 2756015
[2025-11-28 16:03:00] 2025-11-29 00:02:29,287 | INFO     | did not find any defunct processes belonging to 2756015
[2025-11-28 16:03:00] 2025-11-29 00:02:29,288 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 16:03:00] 2025-11-29 00:02:29,288 | INFO     | ready for new job
[2025-11-28 16:03:00] 2025-11-29 00:02:29,288 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 16:03:00] 2025-11-29 00:02:29,290 | INFO     | ***************************************
[2025-11-28 16:03:00] 2025-11-29 00:02:29,290 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 16:03:00] 2025-11-29 00:02:29,290 | INFO     | ***************************************
[2025-11-28 16:03:00] 2025-11-29 00:02:29,290 | INFO     | 
[2025-11-28 16:03:00] 2025-11-29 00:02:29,292 | INFO     | architecture information:
[2025-11-28 16:03:00] 2025-11-29 00:02:29,334 | INFO     | executing command: cat /etc/os-release
[2025-11-28 16:03:00] 2025-11-29 00:02:29,345 | INFO     | cat /etc/os-release:
[2025-11-28 16:03:00] NAME="CentOS Linux"
[2025-11-28 16:03:00] VERSION="7 (Core)"
[2025-11-28 16:03:00] ID="centos"
[2025-11-28 16:03:00] ID_LIKE="rhel fedora"
[2025-11-28 16:03:00] VERSION_ID="7"
[2025-11-28 16:03:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 16:03:00] ANSI_COLOR="0;31"
[2025-11-28 16:03:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 16:03:00] HOME_URL="https://www.centos.org/"
[2025-11-28 16:03:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 16:03:00] 
[2025-11-28 16:03:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 16:03:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 16:03:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 16:03:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 16:03:00] 
[2025-11-28 16:03:00] 2025-11-29 00:02:29,345 | INFO     | ***************************************
[2025-11-28 16:03:00] 2025-11-29 00:02:29,848 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-28 16:03:00] 2025-11-29 00:02:29,859 | INFO     | sufficient remaining disk space (2477484146688 B)
[2025-11-28 16:03:00] 2025-11-29 00:02:29,859 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 16:03:00] 2025-11-29 00:02:29,859 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 16:03:00] 2025-11-29 00:02:29,859 | INFO     | update_server=False
[2025-11-28 16:03:00] 2025-11-29 00:02:29,859 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 16:03:00] 2025-11-29 00:02:29,859 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 16:03:00] 2025-11-29 00:02:29,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:03:00] 2025-11-29 00:02:30,175 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 16:03:00] 2025-11-29 00:02:30,175 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 16:03:00] 2025-11-29 00:02:30,175 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:03:00] 2025-11-29 00:02:30,175 | INFO     | will abort loop
[2025-11-28 16:03:00] 2025-11-29 00:02:30,504 | INFO     | all data control threads have been joined
[2025-11-28 16:03:00] 2025-11-29 00:02:30,606 | INFO     | all job control threads have been joined
[2025-11-28 16:03:00] 2025-11-29 00:02:30,865 | INFO     | [job] retrieve thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:30,870 | INFO     | [job] queue monitor thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:30,951 | INFO     | [data] copytool_in thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:31,021 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:31,045 | INFO     | all payload control threads have been joined
[2025-11-28 16:03:00] 2025-11-29 00:02:31,181 | INFO     | [job] job monitor thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:31,220 | INFO     | [payload] failed_post thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:31,220 | INFO     | [payload] validate_post thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:31,510 | INFO     | [data] control thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:31,564 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:31,612 | INFO     | [job] control thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:31,765 | INFO     | [job] validate thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:31,778 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:31,865 | INFO     | [data] copytool_out thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:31,918 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 16:03:00] 2025-11-29 00:02:32,050 | INFO     | [payload] control thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:32,156 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:35,935 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 16:03:00] 2025-11-29 00:02:49,513 | INFO     | [monitor] cgroup control has ended
[2025-11-28 16:03:00] 2025-11-29 00:02:51,589 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672540092224)>', '<ExcThread(monitor, started 139671120111360)>']
[2025-11-28 16:03:00] 2025-11-29 00:02:56,615 | INFO     | all workflow threads have been joined
[2025-11-28 16:03:00] 2025-11-29 00:02:56,615 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 16:03:00] 2025-11-29 00:02:56,615 | INFO     | traces error code: 0
[2025-11-28 16:03:00] 2025-11-29 00:02:56,615 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 16:03:00] 2025-11-29 00:02:59,740 | INFO     | PID=2749358 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 16:03:00] 2025-11-29 00:02:59,740 | INFO     | .. there are 35 such processes running
[2025-11-28 16:03:00] 2025-11-29 00:02:59,741 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 16:03:00] 2025-11-29 00:02:59,741 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 16:03:00] 2025-11-29 00:02:59,741 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 16:03:00] 2025-11-29 00:02:59,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 16:03:00] 2025-11-29 00:02:59,741 | CRITICAL | thread 'MainThread' is not alive
[2025-11-28 16:03:00] 2025-11-29 00:02:59,741 | INFO     | [monitor] control thread has ended
[2025-11-28 16:03:00] 2025-11-29 00:03:00,088 [wrapper] ==== pilot stdout END ====
[2025-11-28 16:03:00] 2025-11-29 00:03:00,110 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 16:03:00] 2025-11-29 00:03:00,143 [wrapper] pilotpid: 2749358
[2025-11-28 16:03:00] 2025-11-29 00:03:00,151 [wrapper] Pilot exit status: 0
[2025-11-28 16:03:00] 2025-11-29 00:03:00,231 [wrapper] pandaids: 6900368796
[2025-11-28 16:03:00] 2025-11-29 00:03:00,265 [wrapper] cleanup supervisor_pilot 2749364 2749359
[2025-11-28 16:03:00] 2025-11-29 00:03:00,267 [wrapper] Test setup, not cleaning
[2025-11-28 16:03:00] 2025-11-29 00:03:00,268 [wrapper] apfmon messages muted
[2025-11-28 16:03:00] 2025-11-29 00:03:00,270 [wrapper] ==== wrapper stdout END ====
[2025-11-28 16:03:00] 2025-11-29 00:03:00,271 [wrapper] ==== wrapper stderr END ====
[2025-11-28 16:03:00]  *** Error codes and diagnostics ***
[2025-11-28 16:03:00]     "exeErrorCode": 65,
[2025-11-28 16:03:00]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-28 16:03:00]     "pilotErrorCode": 1305,
[2025-11-28 16:03:00]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-28 16:03:00]  *** Listing of results directory ***
[2025-11-28 16:03:00] total 405508
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc    576529 Nov 27 16:58 pilot3.tar.gz
[2025-11-28 16:03:00] -rwx------. 1 boinc boinc     36292 Nov 27 17:02 runpilot2-wrapper.sh
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc      5112 Nov 27 17:05 queuedata.json
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc       100 Nov 28 15:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 16:03:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 15:56 run_atlas
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc       105 Nov 28 15:56 job.xml
[2025-11-28 16:03:00] -rw-r--r--. 2 boinc boinc 411005805 Nov 28 15:56 EVNT.47483658._003453.pool.root.1
[2025-11-28 16:03:00] -rw-r--r--. 2 boinc boinc     15847 Nov 28 15:56 start_atlas.sh
[2025-11-28 16:03:00] drwxrwx--x. 2 boinc boinc      4096 Nov 28 15:56 shared
[2025-11-28 16:03:00] -rw-r--r--. 2 boinc boinc    590113 Nov 28 15:56 input.tar.gz
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc      6629 Nov 28 15:56 init_data.xml
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc         0 Nov 28 15:56 boinc_lockfile
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc      2788 Nov 28 15:56 pandaJob.out
[2025-11-28 16:03:00] -rw-------. 1 boinc boinc    991818 Nov 28 15:56 agis_schedconf.cvmfs.json
[2025-11-28 16:03:00] -rw-------. 1 boinc boinc   1516240 Nov 28 15:56 agis_ddmendpoints.agis.ALL.json
[2025-11-28 16:03:00] drwx------. 5 boinc boinc      4096 Nov 28 15:56 pilot3
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc       524 Nov 28 15:59 boinc_task_state.xml
[2025-11-28 16:03:00] -rw-------. 1 boinc boinc       993 Nov 28 16:00 memory_monitor_summary.json
[2025-11-28 16:03:00] -rw-------. 1 boinc boinc     49690 Nov 28 16:00 log.47556173._004095.job.log.tgz.1
[2025-11-28 16:03:00] -rw-------. 1 boinc boinc     10343 Nov 28 16:02 heartbeat.json
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc      8192 Nov 28 16:02 boinc_mmap_file
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc        23 Nov 28 16:02 wrapper_checkpoint.txt
[2025-11-28 16:03:00] -rw-------. 1 boinc boinc        95 Nov 28 16:02 pilot_heartbeat.json
[2025-11-28 16:03:00] -rw-------. 1 boinc boinc       893 Nov 28 16:02 pilotlog.txt
[2025-11-28 16:03:00] -rw-------. 1 boinc boinc    109045 Nov 28 16:03 log.47556173._004095.job.log.1
[2025-11-28 16:03:00] -rw-------. 1 boinc boinc       186 Nov 28 16:03 output.list
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc       620 Nov 28 16:03 runtime_log
[2025-11-28 16:03:00] -rw-------. 1 boinc boinc    184320 Nov 28 16:03 result.tar.gz
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc      8636 Nov 28 16:03 runtime_log.err
[2025-11-28 16:03:00] -rw-------. 1 boinc boinc       644 Nov 28 16:03 Qk4NDmO31i8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUKOKDmcLNGen.diag
[2025-11-28 16:03:00] -rw-r--r--. 1 boinc boinc     22447 Nov 28 16:03 stderr.txt
[2025-11-28 16:03:00] No HITS result produced
[2025-11-28 16:03:00]  *** Contents of shared directory: ***
[2025-11-28 16:03:00] total 402156
[2025-11-28 16:03:00] -rw-r--r--. 2 boinc boinc 411005805 Nov 28 15:56 ATLAS.root_0
[2025-11-28 16:03:00] -rw-r--r--. 2 boinc boinc     15847 Nov 28 15:56 start_atlas.sh
[2025-11-28 16:03:00] -rw-r--r--. 2 boinc boinc    590113 Nov 28 15:56 input.tar.gz
[2025-11-28 16:03:00] -rw-------. 1 boinc boinc    184320 Nov 28 16:03 result.tar.gz
16:03:01 (2745618): run_atlas exited; CPU time 41.669490
16:03:01 (2745618): called boinc_finish(0)

</stderr_txt>
]]>

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